Olivier Deschaume

Chemistry of aqueous silica nanoparticle surfaces and the mechanism of selective peptide adsorption

Control over selective recognition of biomolecules on inorganic nanoparticles is a major challenge for the synthesis of new catalysts, functional carriers for therapeutics, and assembly of renewable biobased materials. We found low sequence similarity among sequences of peptides strongly attracted to amorphous silica nanoparticles of various size (15-450 nm) using combinatorial phage display methods. Characterization of the surface by acid base titrations and zeta potential measurements revealed that the acidity of the silica particles increased with larger particle size, corresponding to between 5% and 20% ionization of silanol groups at pH 7. The wide range of surface ionization results in the attraction of increasingly basic peptides to increasingly acidic nanoparticles, along with major changes in the aqueous interfacial layer as seen in molecular dynamics simulation. We identified the mechanism of peptide adsorption using binding assays, zeta potential measurements, IR spectra, and molecular simulations of the purified peptides (without phage) in contact with uniformly sized silica particles. Positively charged peptides are strongly attracted to anionic silica surfaces by ion pairing of protonated N-termini, Lys side chains, and Arg side chains with negatively charged siloxide groups. Further, attraction of the peptides to the surface involves hydrogen bonds between polar groups in the peptide with silanol and siloxide groups on the silica surface, as well as ion-dipole, dipole-dipole, and van-der-Waals interactions. Electrostatic attraction between peptides and particle surfaces is supported by neutralization of zeta potentials, an inverse correlation between the required peptide concentration for measurable adsorption and the peptide pI, and proximity of cationic groups to the surface in the computation. The importance of hydrogen bonds and polar interactions is supported by adsorption of noncationic peptides containing Ser, His, and Asp residues, including the formation of multilayers. We also demonstrate tuning of interfacial interactions using mutant peptides with an excellent correlation between adsorption measurements, zeta potentials, computed adsorption energies, and the proposed binding mechanism. Follow-on questions about the relation between peptide adsorption on silica nanoparticles and mineralization of silica from peptide-stabilized precursors are raised.

An overview of the fundamentals of the chemistry of silica with relevance to biosilicification and technological advances

Biomineral formation is widespread in nature, and occurs in bacteria, single‐celled protists, plants, invertebrates, and vertebrates. Minerals formed in the biological environment often show unusual physical properties (e.g. strength, degree of hydration) and often have structures that exhibit order on many length scales. Biosilica, found in single‐celled organisms through to higher plants and primitive animals (sponges), is formed from an environment that is undersaturated with respect to silicon, and under conditions of approximately neutral pH and relatively low temperatures of 4−40 °C compared to those used industrially. Formation of the mineral may occur intracellularly or extracellularly, and specific biochemical locations for mineral deposition that include lipids, proteins and carbohydrates are known. In most cases, the formation of the mineral phase is linked to cellular processes, an understanding of which could lead to the design of new materials for biomedical, optical and other applications. In this contribution, we describe the aqueous chemistry of silica, from uncondensed monomers through to colloidal particles and 3D structures, that is relevant to the environment from which the biomineral forms. We then describe the chemistry of silica formation from alkoxides such as tetraethoxysilane, as this and other silanes have been used to study the chemistry of silica formation using silicatein, and such precursors are often used in the preparation of silicas for technological applications. The focus of this article is on the methods, experimental and computational, by which the process of silica formation can be studied, with an emphasis on speciation.

Direct evidence of ZnO morphology modification via the selective adsorption of ZnO-binding peptides

Biomolecule-mediated ZnO synthesis has great potential for the tailoring of ZnO morphology for specific application in biosensors, window materials for display and solar cells, dye-sensitized solar cells (DSSCs), biomedical materials, and photocatalysts due to its specificity and multi-functionality. In this contribution, the effect of a ZnO-binding peptide (ZnO-BP, G-12: GLHVMHKVAPPR) and its GGGC-tagged derivative (GT-16: GLHVMHKVAPPRGGGC) on the growth of ZnO crystals expressing morphologies dependent on the relative growth rates of (0001) and (100) planes of ZnO have been studied. The amount of peptide adsorbed was determined by a depletion method using oriented ZnO films grown by Atomic Layer Deposition (ALD), while the adsorption behavior of G-12 and GT-16 was investigated using XPS and a computational approach. Direct evidence was obtained to show that (i) both the ZnO-BP identified by phage display and its GGGC derivative (GT-16) are able to bind to ZnO and modify crystal growth in a molecule and concentration dependent fashion, (ii) plane selectivity for interaction with the (0001) versus the (100) crystal planes is greater for GT-16 than G-12; and (iii) specific peptide residues interact with the crystal surface albeit in the presence of charge compensating anions. To our knowledge, this is the first study to provide unambiguous and direct quantitative experimental evidence of the modification of ZnO morphology via (selective and non-selective) adsorption–growth inhibition mechanisms mediated by a ZnO-BP identified from phage display libraries.

Urea potentiometric enzymatic biosensor based on charged biopolymers and electrodeposited polyaniline

A potentiometric biosensor based on urease was developed for the quantitative determination of urea concentration in aqueous solutions for biomedical applications. The urease was either physisorbed onto an electrodeposited polyaniline film (PANI), or immobilized on a layer-by-layer film (LbL) assembled over the PANI film, that was obtained by the alternate deposition of charged polysaccharides (carboxymethylpullulan (CMP) and chitosan (CHI)). In the latter case, the urease (Urs) enzyme was either physically adsorbed or covalently grafted to the LbL film using carbodiimide coupling reaction. Potentiometric responses of the enzymatic biosensors were measured as a function of the urea concentration in aqueous solutions (from 10(-6) to 10(-1) mol L(-1) urea). Very high sensitivity and short response time were observed for the present biosensor. Moreover, a stability study showed a higher stability over time for the potentiometric response of the sensor with the enzyme-grafted LbL film, testifying for the protective nature of the polysaccharide coating and the interest of covalent grafting.

A Solution Study of Silica Condensation and Speciation with Relevance to in Vitro Investigations of Biosilicification

Requiring mild synthesis conditions and possessing a high level of organization and functionality, biosilicas constitute a source of wonder and inspiration for both materials scientists and biologists. In order to understand how such biomaterials are formed and to apply this knowledge to the generation of novel bioinspired materials, a detailed study of the materials, as formed under biologically relevant conditions, is required. In this contribution, data from a detailed study of silica speciation and condensation using a model bioinspired silica precursor (silicon catechol complex, SCC) is presented. The silicon complex quickly and controllably dissociates under neutral pH conditions to well-defined, metastable solutions of orthosilicic acid. The formation of silicomolybdous (blue) complexes was used to monitor and study different stages of silicic acid condensation. In parallel, the rates of silicomolybdic (yellow) complex formation, with mathematical modeling of the species present, was used to follow the solution speciation of polysilicic acids. The results obtained from the two assays correlate well. Monomeric silicic acid, trimeric silicic acids, and different classes of oligomeric polysilicic acids and silica nuclei can be identified and their periods of stability during the early stages of silica condensation measured. For experiments performed at a range of temperatures (273-323 K), an activation energy of 77 kJ.mol(-1) was obtained for the formation of trimers. The activation energies for the forward and reverse condensation reactions for addition of monomers to polysilicic acids (273-293 +/- 1 K) were 55.0 and 58.6 kJ.mol(-1), respectively. For temperatures above 293 K, these energies were reduced to 6.1 and 7.3 kJ.mol(-1), indicating a probable change in the prevailing condensation mechanism. The impact of pH on the rates of condensation were measured. There was a direct correlation between the apparent third-order rate constant for trimer formation and pH (4.7-6.9 +/- 0.1) while values for the reversible first-order rates reached a plateau at circumneutral pH. These different behaviors are discussed with reference to the generally accepted mechanism for silica condensation in which anionic silicate solution species are central to the condensation process. The results presented in this paper support the use of precursors such as silicon catecholate complexes in the study of biosilicification in vitro. Further detailed experimentation is needed to increase our understanding of specific biomolecule silica interactions that ultimately generate the complex, finely detailed siliceous structures we observe in the world around us.

Interactions of aluminium hydrolytic species with biomolecules

In this contribution the formation of bioinorganic assemblies between the basic globular protein lysozyme and aqueous aluminium species including Al13-mer, Al30-mer and colloidal aluminium hydroxide have been explored and comparison made to previous interaction studies performed with bovine serum albumin (BSA). Specific charge-stabilised bioinorganic assemblies involving aluminium species and lysozyme were observed to form in contrast to the gel like structures formed on interaction of BSA with aluminium species. As demonstrated by infrared spectroscopy (structural assignment, 2D correlation spectroscopy), interactions mostly involve acidic surface groups of the proteins (Asp, Glu), with strong complexation and deprotonation in the case of BSA interacting with Al13 and Al30 and through hydrogen bonding for lysozyme interacting with the same species and aluminium hydroxide particles interacting with both biomolecules.

Room temperature atomic layer deposition of Al2O3 and replication of butterfly wings for photovoltaic application

In this paper, we present two key process steps for potential applications in the fabrication of low-cost and high-efficiency ultrathin monocrystalline silicon (mono-Si) solar cells to effectively harvest solar energy. One is to grow an Al2O3 passivation layer on the rear side of an Si wafer by a successive atomic layer deposition (ALD) at room temperature (25 °C). The other is to produce a bio-inspired antireflection structure on the front side of the Si wafer by replicating butterfly wing patterns. The capacitance–voltage measurements reveal that the successive ALD procedure can yield a higher negative charge density at the Al2O3/Si interface relative to the conventional one. The measurement results of quasi-steady-state photoconductance indicate that after annealing, the 25 °C ALD Al2O3 layers reach a similar passivation level to the p-type Si wafers compared to that deposited at 250 °C. With the help of an ALD Al2O3 layer, butterfly wing patterns (Hypochrysops polycletus) are replicated on a PMMA layer which is on an SiO2/Si stack. This work demonstrates the ability for replicating the natural photonic features on Si wafers and other substrates by using nanoimprint.

Selective Protein Immobilization onto Gold Nanoparticles Deposited under Vacuum on a Protein-Repellent Self-Assembled Monolayer

The immobilization of proteins on flat substrates plays an important role for a wide spectrum of applications in the fields of biology, medicine, and biochemistry, among others. An essential prerequisite for the use of proteins (e.g., in biosensors) is the conservation of their biological activity. Losses in activity upon protein immobilization can largely be attributed to a random attachment of the proteins to the surface. In this study, we present an approach for the immobilization of proteins onto a chemically heterogeneous surface, namely a surface consisting of protein-permissive and protein-repellent areas, which allows for significant reduction of random protein attachment. As protein-permissive, i.e., as protein-binding sites, ultra pure metallic nanoparticles are deposited under vacuum onto a protein-repellent PEG-silane polymer layer. Using complementary surface characterization techniques (atomic force microscopy, quartz crystal microbalance, and X-ray photoelectron spectroscopy) we demonstrate that the Au nanoparticles remain accessible for protein attachment without compromising the protein-repellency of the PEG-silane background. Moreover, we show that the amount of immobilized protein can be controlled by tuning the Au nanoparticle coverage. This method shows potential for applications requiring the control of protein immobilization down to the single molecule level.

Comparison of the Density of Proteins and Peptides Grafted on Silane Layers and Polyelectrolyte Multilayers

Immobilized proteins or peptides are of critical importance for applications such as biosensing or cell culture. We analyze the structure of layers of a large variety of proteins and peptides, grafted on silicon substrates by different routes differing in the nature of the intermediate layer linking the biomolecules to the substrate, either a silane monolayer, or a polyelectrolyte multilayer made from synthetic or natural polymers. The structural analysis is essentially performed by X-ray reflectometry, which proves to be an efficient methodology not requiring the use of tagged biomolecules, capable of evaluating consistently the amount of grafted biomolecules per surface area with estimated precisions ranging from 10 to 20%. The study provides a quantitative basis for selecting one among a series of well-proofed and sturdy grafting methodologies and underlines the potential of XRR for assessing the amount of grafted biomacromolecules without requiring the expensive tagging of molecules. Our results also show that, for the coupling route resting on synthetic polyelectrolytes, the grafting density is significantly lower than for direct coupling over a silane layer. In contrast, when performed over a cushion based on polysaccharides, the grafting density is well above the values found for a dense layer grafted on a silane monolayer, indicating partial penetration and swelling of the polysaccharide cushion.

Impact of Amino Acids on the Isomerization of the Aluminum Tridecamer Al13

The stability of the Keggin polycation ε-Al13 is monitored by 27Al NMR and ferron colorimetric assay upon heating aluminum aqueous solutions containing different amino acids with overall positive, negative, or no charge at pH 4.2. A focus on the effect of the amino acids on the isomerization process from ε- to δ-Al13 is made, compared and discussed as a function of the type of organic additive. Amino acids such as glycine and β-alanine, with only one functional group interacting relatively strongly with aluminum polycations, accelerate isomerization in a concentration-dependent manner. The effect of this class of amino acids is also found increasing with the pKa of their carboxylic acid moiety, from a low impact from proline up to more than a 15-fold increased rate from the stronger binders such as glycine or β-alanine. Amino acids with relatively low C-terminal pKa, but bearing additional potential binding moieties such as free alcohol (hydroxyl group) moiety of serine or the amide of glutamine, speed the isomerization comparatively and even more than glycine or β-alanine, glutamine leading to the fastest rates observed so far. With aspartic and glutamic acids, changes in aluminum speciation are faster and significant even at room temperature but rather related to the reorganization toward slow reacting complexed oligomers than to the Al13 isomerization process. The linear relation between the apparent rate constant of isomerization and the additive concentration points to a first-order process with respect to the additives. Most likely, the dominant process is an accelerated ε-Al13 dissociation, increasing the probability of δ isomer formation.