Siddharth V. Patwardhan

Chemistry of aqueous silica nanoparticle surfaces and the mechanism of selective peptide adsorption

Control over selective recognition of biomolecules on inorganic nanoparticles is a major challenge for the synthesis of new catalysts, functional carriers for therapeutics, and assembly of renewable biobased materials. We found low sequence similarity among sequences of peptides strongly attracted to amorphous silica nanoparticles of various size (15-450 nm) using combinatorial phage display methods. Characterization of the surface by acid base titrations and zeta potential measurements revealed that the acidity of the silica particles increased with larger particle size, corresponding to between 5% and 20% ionization of silanol groups at pH 7. The wide range of surface ionization results in the attraction of increasingly basic peptides to increasingly acidic nanoparticles, along with major changes in the aqueous interfacial layer as seen in molecular dynamics simulation. We identified the mechanism of peptide adsorption using binding assays, zeta potential measurements, IR spectra, and molecular simulations of the purified peptides (without phage) in contact with uniformly sized silica particles. Positively charged peptides are strongly attracted to anionic silica surfaces by ion pairing of protonated N-termini, Lys side chains, and Arg side chains with negatively charged siloxide groups. Further, attraction of the peptides to the surface involves hydrogen bonds between polar groups in the peptide with silanol and siloxide groups on the silica surface, as well as ion-dipole, dipole-dipole, and van-der-Waals interactions. Electrostatic attraction between peptides and particle surfaces is supported by neutralization of zeta potentials, an inverse correlation between the required peptide concentration for measurable adsorption and the peptide pI, and proximity of cationic groups to the surface in the computation. The importance of hydrogen bonds and polar interactions is supported by adsorption of noncationic peptides containing Ser, His, and Asp residues, including the formation of multilayers. We also demonstrate tuning of interfacial interactions using mutant peptides with an excellent correlation between adsorption measurements, zeta potentials, computed adsorption energies, and the proposed binding mechanism. Follow-on questions about the relation between peptide adsorption on silica nanoparticles and mineralization of silica from peptide-stabilized precursors are raised.

Biomimetic and bioinspired silica: recent developments and applications

In a previous review of biological and bioinspired silica formation (S. V. Patwardhan et al., Chem. Commun., 2005, 1113 [ref. 1]), we have identified and discussed the roles that organic molecules (additives) play in silica formation in vitro. Tremendous progress has been made in this field since and this review attempts to capture, with selected examples from the literature, the key advances in synthesising and controlling properties of silica-based materials using bioinspired approaches, i.e. conditions of near-neutral pH, all aqueous environments and room temperature. One important reason to investigate biosilicifying systems is to be able to develop novel materials and/or technologies suitable for a wide range of applications. Therefore, this review will also focus on applications arising from research on biological and bioinspired silica. A range of applications such as in the areas of sensors, coatings, hybrid materials, catalysis and biocatalysis and drug delivery have started appearing. Furthermore, scale-up of this technology suitable for large-scale manufacturing has proven the potential of biologically inspired synthesis.

From biosilicification to tailored materials: Optimizing hydrophobic domains and resistance to protonation of polyamines

Considerable research has been directed toward identifying the mechanisms involved in biosilicification to understand and possibly mimic the process for the production of superior silica-based materials while simultaneously minimizing pollution and energy costs. Molecules isolated from diatoms and, most recently sponges, thought to be key to this process contain polyamines with a propylamine backbone and variable levels of methylation. In a chemical approach to understanding the role of amine (especially propylamine) structures in silicification we have explored three key structural features: (i) the degree of polymerization, (ii) the level of amine methylation, and (iii) the size of the amine chain spacers. In this article, we show that there are two factors critical to their function: the ability of the amines to produce microemulsions and the presence of charged and uncharged amine groups within a molecule, with the latter feature helping to catalyze silicic acid condensation by a proton donor/acceptor mechanism. The understanding of amine–silicate interactions obtained from this study has enabled the controlled preparation of hollow and nonporous siliceous materials under mild conditions (circumneutral pH, room temperature, and in all aqueous systems) possibly compatible with the conditions used by biosystems. The “rules” identified from our study were further used predictively to modulate the activity of a given amine. We believe that the outcomes of the present contribution will form the basis for an approach to controlling the growth of inorganic materials by using tailor-made organic molecules.

Silicification and biosilicification part 3

Biosilicification takes place at or very close pH 7.0 and under ambient conditions of temperature and pressure in vivo. The silicic acid transporters and the proteins facilitating biosilicification in diatoms have been identified. Silica synthesis under mild conditions in vitro has been demonstrated using synthetic polymers with control over the resulting silica morphology. The results presented herein show that the silica synthesis in vitro is not specific to particular enzymes/polypeptides due to their particular chemical structure and activity but that many other synthetic macromolecules are also capable of facilitating silica formation at neutral pH. We also report the synthesis of organic-inorganic hybrid materials that have potential in optoelectronic applications.

Spermine, spermidine and their analogues generate tailored silicas

Biosilicifying organisms such as diatoms, sponges and higher plants deposit ornate “glassy” siliceous materials with well defined properties such as particle size and porosity at precisely controlled growth rates. Here we present the in vitro synthesis and characterisation of “glassy” silica with tailored properties by using naturally occurring amines—spermidine and spermine—and their analogues. These additives were found to regulate the growth rates, particle sizes, maturation, surface areas, porosities and morphologies of the siliceous materials prepared. In particular, the combination of unique catalytic effects and aggregation behaviours that are dependent on or related to chain length, intramolecular N–N spacing and C : N ratio of the additives was found to be responsible for controlling materials properties. Mechanisms regulating the generation of silicas showing a range of material characteristics are proposed.

Interactions of biomolecules with inorganic materials: principles, applications and future prospects

Interactions between inorganic materials and biomolecules at the molecular level, although complex, are commonplace. Examples include biominerals, which are, in most cases, facilitated by and in contact with biomolecules; implantable biomaterials; and food and drug handling. The effectiveness of these functional materials is dependant on the interfacial properties i.e. the extent of molecular level ‘association’ with biomolecules. The goal of this overview is four-fold: to present biomolecule–inorganic materials interactions and our current understanding using selected examples; to elaborate on approaches that have been used to expose the mechanisms underpinning such interactions; to identify the ‘rules’ or ‘guiding principles’ that govern interactions that could be used to explain and hence predict behaviour; and finally to highlight the drawbacks of the present approaches and outline future challenges and opportunities.

Direct evidence of ZnO morphology modification via the selective adsorption of ZnO-binding peptides

Biomolecule-mediated ZnO synthesis has great potential for the tailoring of ZnO morphology for specific application in biosensors, window materials for display and solar cells, dye-sensitized solar cells (DSSCs), biomedical materials, and photocatalysts due to its specificity and multi-functionality. In this contribution, the effect of a ZnO-binding peptide (ZnO-BP, G-12: GLHVMHKVAPPR) and its GGGC-tagged derivative (GT-16: GLHVMHKVAPPRGGGC) on the growth of ZnO crystals expressing morphologies dependent on the relative growth rates of (0001) and (100) planes of ZnO have been studied. The amount of peptide adsorbed was determined by a depletion method using oriented ZnO films grown by Atomic Layer Deposition (ALD), while the adsorption behavior of G-12 and GT-16 was investigated using XPS and a computational approach. Direct evidence was obtained to show that (i) both the ZnO-BP identified by phage display and its GGGC derivative (GT-16) are able to bind to ZnO and modify crystal growth in a molecule and concentration dependent fashion, (ii) plane selectivity for interaction with the (0001) versus the (100) crystal planes is greater for GT-16 than G-12; and (iii) specific peptide residues interact with the crystal surface albeit in the presence of charge compensating anions. To our knowledge, this is the first study to provide unambiguous and direct quantitative experimental evidence of the modification of ZnO morphology via (selective and non-selective) adsorption–growth inhibition mechanisms mediated by a ZnO-BP identified from phage display libraries.

The use of poly-L-lysine to form novel silica morphologies and the role of polypeptides in biosilicification

Silicification at neutral pH and under ambient conditions in vitro is of great interest due to its relationship with silicification in vivo as well as for the benign conditions of the process. As it is important to know the exact group(s) or a particular site in the macromolecules that are responsible for the silicification under these conditions in vivo, poly-L-lysine (PLL) was chosen for this investigation in vitro. Here we report the use of tetramethoxysilane (TMOS) as a silica precursor and the utilization of poly-L-lysine (PLL) for silicification at neutral pH and under ambient conditions. We describe (1) the use of PLL to precipitate silica, (2) the effect of mixing of macromolecules PLL and poly(allylamine hydrochloride) (PAH) to control morphologies of the product, and (3) the formation of novel silica morphologies.

Effect of process parameters on the polymer mediated synthesis of silica at neutral pH

We report herein the synthesis of well-defined silica structures atneutral pH and ambient conditions using poly(allylamine hydrochloride)(PAH), a cationically charged synthetic polymer, as a catalyst/template.Tetramethoxysilane (TMOS) was used as the precursor and the synthesisprocess parameters varied include TMOS pre-hydrolysis time(tP), reaction time (tR), buffer, molecular weightof the polymer, TMOS concentration, polymer concentration andperturbation of the reaction mixture. It was found that the TMOSpre-hydrolysis time was an important parameter governing the resultingsilica morphology along with the reaction time and the TMOSconcentration. Characterization of the silica was performed using SEM,FTIR, EDS and XRD. The poly(allylamine hydrochloride), which was thecatalyst/template, was found to be incorporated into the silicaparticles. These findings are of importance for understanding the roleof polypeptides, in nature, and macromolecules, in general, that arecapable of forming similar silica structures.

A Solution Study of Silica Condensation and Speciation with Relevance to in Vitro Investigations of Biosilicification

Requiring mild synthesis conditions and possessing a high level of organization and functionality, biosilicas constitute a source of wonder and inspiration for both materials scientists and biologists. In order to understand how such biomaterials are formed and to apply this knowledge to the generation of novel bioinspired materials, a detailed study of the materials, as formed under biologically relevant conditions, is required. In this contribution, data from a detailed study of silica speciation and condensation using a model bioinspired silica precursor (silicon catechol complex, SCC) is presented. The silicon complex quickly and controllably dissociates under neutral pH conditions to well-defined, metastable solutions of orthosilicic acid. The formation of silicomolybdous (blue) complexes was used to monitor and study different stages of silicic acid condensation. In parallel, the rates of silicomolybdic (yellow) complex formation, with mathematical modeling of the species present, was used to follow the solution speciation of polysilicic acids. The results obtained from the two assays correlate well. Monomeric silicic acid, trimeric silicic acids, and different classes of oligomeric polysilicic acids and silica nuclei can be identified and their periods of stability during the early stages of silica condensation measured. For experiments performed at a range of temperatures (273-323 K), an activation energy of 77 kJ.mol(-1) was obtained for the formation of trimers. The activation energies for the forward and reverse condensation reactions for addition of monomers to polysilicic acids (273-293 +/- 1 K) were 55.0 and 58.6 kJ.mol(-1), respectively. For temperatures above 293 K, these energies were reduced to 6.1 and 7.3 kJ.mol(-1), indicating a probable change in the prevailing condensation mechanism. The impact of pH on the rates of condensation were measured. There was a direct correlation between the apparent third-order rate constant for trimer formation and pH (4.7-6.9 +/- 0.1) while values for the reversible first-order rates reached a plateau at circumneutral pH. These different behaviors are discussed with reference to the generally accepted mechanism for silica condensation in which anionic silicate solution species are central to the condensation process. The results presented in this paper support the use of precursors such as silicon catecholate complexes in the study of biosilicification in vitro. Further detailed experimentation is needed to increase our understanding of specific biomolecule silica interactions that ultimately generate the complex, finely detailed siliceous structures we observe in the world around us.