Patrick Brocorens

Supramolecular organization in block copolymers containing a conjugated segment: a joint AFM/molecular modeling study

Abstract The solid-state supramolecular organization of block copolymers containing one π-conjugated block and one non-conjugated block is elucidated with a joint experimental and theoretical approach. This approach combines atomic force microscopy (AFM) measurements on thin polymer deposits, which reveal the typical microscopic morphologies, and molecular modeling, which allows one to derive the models for chain packing that are most likely to explain the AFM observations. The conjugated systems considered in this study are based on aromatic building blocks (i.e. phenylene, phenylene ethylene, fluorene, or indenofluorene), substituted with alkyl groups to provide solubility; they are attached to non-conjugated blocks such as polydimethylsiloxane, polyethylene oxide, or polystyrene. Films are prepared from solutions in solvents which are good for both blocks, in order to prevent aggregation processes in solution. Therefore, the morphology observed in the solid state is expected to result mostly from the intrinsic self-assembly of the chains, with little specific influence of the solvent. In such conditions, the vast majority of compounds show deposits made of fibrilar objects. Closer examination of single fibrils on the substrate surface indicates that the objects are ribbon-like, i.e. their width is significantly larger than their height, with typical dimensions of a few tens of nanometers and a few nanometers, respectively. These results suggest that a single type of packing process, governed by the π-stacking of the conjugated chains, is at work in those block copolymers. This prevalence of such a type of packing is supported by the theoretical simulations. Molecular mechanics/dynamics calculations show that the conjugated segments tend to form stable π-stacks. In these assemblies, the block copolymer molecules can organize in either a head-to-tail or head-to-head configuration. The former case appears to be most likely because it allows for significant coiling of the non-conjugated blocks while maintaining the conjugated blocks in a compact, regular assembly. Such supramolecular organization is likely responsible for the formation of the thin, ‘elementary’ ribbons, which can further assemble into larger bundles. The issue of chain packing in fluorene-based systems has been modeled separately, since in these compounds, the alkyl groups attached to sp 3 -hybridized sites inherently accommodate out of the plane of the conjugated backbone, which can disturb the chain packing. Various possibilities of chain packing have been explored, starting from short alkyl substituents and extending the size of the side groups to n -octyl. The calculations indicate that, when in zig-zag planar conformation, linear alkyl side groups can orient in such a way that close π-stacking of the conjugated chains is preserved. In contrast, branched alkyl groups are too bulky to allow close packing of the conjugated backbones to take place. This difference is consistent with the presence or absence of fibrilar structures observed in thin deposits of the corresponding polymers; it can also account for the differences observed in the optical properties.

A dynamic supramolecular polymer with stimuli-responsive handedness for in situ probing of enzymatic ATP hydrolysis.

Design of artificial systems, which can respond to fluctuations in concentration of adenosine phosphates (APs), can be useful in understanding various biological processes. Helical assemblies of chromophores, which dynamically respond to such changes, can provide real-time chiroptical readout of various chemical transformations. Towards this concept, here we present a supramolecular helix of achiral chromophores, which shows chiral APs responsive tunable handedness along with dynamically switchable helicity. This system, composing of naphthalenediimides with phosphate recognition unit, shows opposite handedness on binding with ATP compared with ADP or AMP, which is comprehensively analysed with molecular dynamic simulations. Such differential signalling along with stimuli-dependent fast stereomutations have been capitalized to probe the reaction kinetics of enzymatic ATP hydrolysis. Detailed chiroptical analyses provide mechanistic insights into the enzymatic hydrolysis and various intermediate steps. Thus, a unique dynamic helical assembly to monitor the real-time reaction processes via its stimuli-responsive chiroptical signalling is conceptualized.

Expression of chirality in molecular layers at surfaces: insights from modelling

This tutorial review illustrates how modelling can be used to understand the structure and properties of chiral surfaces formed by adsorption of molecular layers. The two major theoretical approaches for such modelling (Density Functional Theory and classical force-field methods) are briefly described and compared. A few examples of their use are given, focussing on: (i) the expression of chirality at the local and global scale in layers of chiral molecules, (ii) the appearance of chirality in layers of achiral molecules on achiral surfaces, and (iii) the molecular organisation in layers formed from racemic mixtures.

Theoretical Characterization of Phenylene-based Oligomers, Polymers, and Dendrimers

Phenylene-based π-conjugated materials are of current interest due to their wide range of possible applications, especially in light-emitting diodes, displays, and lasers. In this contribution, we first review the results of recent theoretical calculations on the geometric and electronic properties of phenylene-based chains, paying special attention to the influence of chemical doping on the geometry and optical absorption spectra. We then discuss an approach that allows us to characterize the electronic levels of finite size molecules in momentum space and to describe the chain-size evolution from molecular levels to band states in quasi-infinite one-dimensional chains. Finally, we characterize, at the molecular mechanics and molecular dynamics level, the structural properties of dendrimers synthesized with benzene rings as molecular building blocks; we analyze the shape persistence of dendrimers built on different cores by investigating the time evolution of the structures of their first and second generations.

Conformational plasticity of hydrogen bonded bis-urea supramolecular polymers.

We report a detailed structural investigation of supramolecular polymers formed by hydrogen bonded self-assembly of bis-urea monomers. The careful exploration of the energy landscape by molecular mechanics/molecular dynamics (MM/MD) simulations has allowed us to identify three distinct self-assembled structures of similar stabilities. These structures have been compared to X-ray crystal data. We observe that a slight change in the molecular structure can favor a particular structure over the others. Detailed analysis shows that hydrogen bonds stabilize all three structures to a similar extent. Therefore, it is the interactions among the lateral substituents, and with the filament environment, that are the decisive factors in the competition between the possible self-assembled structures. This study constitutes a clear reminder that the conformation of a supramolecular polymer is a sensitive function of the molecular structure and may significantly differ from the solid-state conformation of a model compound.

Microscopic Morphology of Chlorinated Polyethylene-Based Nanocomposites Synthesized from Poly(ε-caprolactone)/Clay Masterbatches

Chlorinated polyethylene (CPE) nanocomposites were synthesized by melt blending clay-rich/poly(epsilon-caprolactone) (PCL) masterbatches to CPE matrices. The masterbatches were prepared following two synthetic routes: either PCL is melt-blended to the clay or it is grafted to the clay platelets by in situ polymerization. The microscopic morphology of the nanocomposites was characterized by X-ray diffraction, atomic force microscopy, transmission electron microscopy, and modulated temperature differential scanning calorimetry. When using free PCL, intercalated composites are formed, with clay aggregates that can have micrometric dimensions and a morphology similar to that of the talc particles used as fillers in commercial CPE. PCL crystallizes as long lamellae dispersed in the polymer matrix. When using grafted PCL, the nanocomposite is intercalated/exfoliated, and the clay stacks are small and homogeneously dispersed. PCL crystallizes as lamellae and smaller crystals, which are localized along the clay layers. Thanks to the grafting of PCL to the clay platelets, these crystalline domains are thought to form a network with the clay sheets, which is responsible for the large improvement of the mechanical properties of these materials.

Fire and Gas Barrier Properties of Poly(styrene-co-acrylonitrile) Nanocomposites Using Polycaprolactone/Clay Nanohybrid Based-Masterbatch

Exfoliated nanocomposites are prepared by dispersion of poly(-caprolactone) (PCL) grafted montmorillonite nanohybrids used as masterbatches in poly(styrene-co-acrylonitrile) (SAN). The PCL-grafted clay nanohybrids with high inorganic content are synthesized by in situ intercalative ring-opening polymerization of -caprolactone between silicate layers organomodified by alkylammonium cations bearing two hydroxyl functions. The polymerization is initiated by tin alcoholate species derived from the exchange reaction of tin(II) bis(2-ethylhexanoate) with the hydroxyl groups borne by the ammonium cations that organomodified the clay. These highly filled PCL nanocomposites (25 wt% in inorganics) are dispersed as masterbatches in commercial poly(styrene-co-acrylonitrile) by melt blending. SAN-based nanocomposites containing 3 wt% of inorganics are accordingly prepared. The direct blend of SAN/organomodified clay is also prepared for sake of comparison. The clay dispersion is characterized by wide-angle X-ray diffraction (WAXD), atomic force microscopy (AFM), and solid state NMR spectroscopy measurements. The thermal properties are studied by thermogravimetric analysis. The flame retardancy and gas barrier resistance properties of nanocomposites are discussed both as a function of the clay dispersion and of the matrix/clay interaction.

Tuning the nature and stability of self-assemblies formed by ester benzene 1,3,5-tricarboxamides: the crucial role played by the substituents

As the benzene 1,3,5-tricarboxamide (BTA) moiety is commonly used as the central assembling unit for the construction of functionalized supramolecular architectures, strategies to tailor the nature and stability of BTA assemblies are needed. The assembly properties of a library of structurally simple BTAs derived from amino dodecyl esters (ester BTAs, 13 members) have been studied, either in the bulk or in cyclohexane solutions, by means of a series of analytical methods (NMR, DSC, POM, FT-IR, UV-Vis, CD, ITC, high-sensitivity DSC, SANS). Two types of hydrogen-bonded species have been identified and characterized: the expected amide-bonded helical rods (or stacks) that are structurally similar to those formed by BTAs with simple alkyl side chains (alkyl BTAs), and ester-bonded dimers in which the BTAs are connected by means of hydrogen bonds linking the amide N-H and the ester C[double bond, length as m-dash]O. MM/MD calculations coupled with simulations of CD spectra allow for the precise determination of the molecular arrangement and of the hydrogen bond pattern of these dimers. Our study points out the crucial influence of the substituent attached on the amino-ester α-carbon on the relative stability of the rod-like versus dimeric assemblies. By varying this substituent, one can precisely tune the nature of the dominant hydrogen-bonded species (stacks or dimers) in the neat compounds and in cyclohexane over a wide range of temperatures and concentrations. In the neat BTAs, stacks are stable up to 213 °C and dimers above 180 °C whilst in cyclohexane stacks form at c* > 3 × 10-5 M at 20 °C and dimers are stable up to 80 °C at 7 × 10-6 M. Ester BTAs that assemble into stacks form a liquid-crystalline phase and yield gels or viscous solutions in cyclohexane, demonstrating the importance of controlling the structure of these assemblies. Our systematic study of these structurally similar ester BTAs also allows for a better understanding of how a single atom or moiety can impact the nature and stability of BTA aggregates, which is of importance for the future development of functionalized BTA supramolecular polymers.

Beta Sheets with a Twist: The Conformation of Helical Polyisocyanopeptides Determined by Using Vibrational Circular Dichroism

Detailed information on the architecture of polyisocyanopeptides based on vibrational circular dichroism (VCD) spectroscopy in combination with DFT calculations is presented. It is demonstrated that the screw sense of the helical polyisocyanides can be determined directly from the C=N-stretch vibrational region of the VCD spectrum. Analysis of the VCD signals associated with the amide I and amide II modes provides detailed information on the peptide side-chain arrangement in the polymer and indicates the presence of a helical β-sheet architecture, in which the dihedral angles are slightly different to those of natural β-sheet helices.

Tuning the structure of 1,3,5-benzene tricarboxamide self-assemblies through stereochemistry

A heterochiral 1,3,5-benzene tricarboxamide (BTA) monomer, derived from valine dodecyl ester, forms long rods in cyclohexane whilst its homochiral analogue assembles into dimers only at the same concentration. This highly original assembly behaviour is related to the destabilization of the dimeric structure containing the two heterochiral monomers as corroborated by a combined experimental and computational study.