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Featured researches published by Patrick Brophy.


Environmental Science & Technology | 2016

Anthropogenic Sulfur Perturbations on Biogenic Oxidation: SO2 Additions Impact Gas-Phase OH Oxidation Products of α- and β-Pinene

Beth Friedman; Patrick Brophy; William H. Brune; Delphine K. Farmer

In order to probe how anthropogenic pollutants can impact the atmospheric oxidation of biogenic emissions, we investigated how sulfur dioxide (SO2) perturbations impact the oxidation of two monoterpenes, α-and β-pinene. We used chemical ionization mass spectrometry to examine changes in both individual molecules and gas-phase bulk properties of oxidation products as a function of SO2 addition. SO2 perturbations impacted the oxidation systems of α-and β-pinene, leading to an ensemble of products with a lesser degree of oxygenation than unperturbed systems. These changes may be due to shifts in the OH:HO2 ratio from SO2 oxidation and/or to SO3 reacting directly with organic molecules. Van Krevelen diagrams suggest a shift from gas-phase functionalization by alcohol/peroxide groups to functionalization by carboxylic acid or carbonyl groups, consistent with a decreased OH:HO2 ratio. Increasing relative humidity dampens the impact of the perturbation. This decrease in oxygenation may impact secondary organic aerosol formation in regions dominated by biogenic emissions with nearby SO2 sources. We observed sulfur-containing organic compounds following SO2 perturbations of monoterpene oxidation; whether these are the result of photochemistry or an instrumental artifact from ion-molecule clustering remains uncertain. However, our results demonstrate that the two monoterpene isomers produce unique suites of oxidation products.


Geophysical Research Letters | 2016

Photochemical processing of diesel fuel emissions as a large secondary source of isocyanic acid (HNCO)

Michael F. Link; Beth Friedman; R. Fulgham; Patrick Brophy; Abril A. Galang; Shantanu H. Jathar; P. R. Veres; James M. Roberts; Delphine K. Farmer

Isocyanic acid (HNCO) is a well-known air pollutant that affects human health. Biomass burning, smoking, and combustion engines are known HNCO sources, but recent studies suggest that secondary production in the atmosphere may also occur. We directly observed photochemical production of HNCO from the oxidative aging of diesel exhaust during the Diesel Exhaust Fuel and Control experiments at Colorado State University using acetate ionization time-of-flight mass spectrometry. Emission ratios of HNCO were enhanced, after 1.5 days of simulated atmospheric aging, from 50 to 230 mg HNCO/kg fuel at idle engine operating conditions. Engines operated at higher loads resulted in less primary and secondary HNCO formation, with emission ratios increasing from 20 to 40 mg HNCO/kg fuel under 50% load engine operating conditions. These results suggest that photochemical sources of HNCO could be more significant than primary sources in urban areas.


Environmental Science & Technology | 2017

Linking Load, Fuel, and Emission Controls to Photochemical Production of Secondary Organic Aerosol from a Diesel Engine

Shantanu H. Jathar; Beth Friedman; Abril A. Galang; Michael F. Link; Patrick Brophy; John Volckens; Sailaja Eluri; Delphine K. Farmer

Diesel engines are important sources of fine particle pollution in urban environments, but their contribution to the atmospheric formation of secondary organic aerosol (SOA) is not well constrained. We investigated direct emissions of primary organic aerosol (POA) and photochemical production of SOA from a diesel engine using an oxidation flow reactor (OFR). In less than a day of simulated atmospheric aging, SOA production exceeded POA emissions by an order of magnitude or more. Efficient combustion at higher engine loads coupled to the removal of SOA precursors and particle emissions by aftertreatment systems reduced POA emission factors by an order of magnitude and SOA production factors by factors of 2-10. The only exception was that the retrofitted aftertreatment did not reduce SOA production at idle loads where exhaust temperatures were low enough to limit removal of SOA precursors in the oxidation catalyst. Use of biodiesel resulted in nearly identical POA and SOA compared to diesel. The effective SOA yield of diesel exhaust was similar to that of unburned diesel fuel. While OFRs can help study the multiday evolution, at low particle concentrations OFRs may not allow for complete gas/particle partitioning and bias the potential of precursors to form SOA.


Journal of Geophysical Research | 2017

Observations of acyl peroxy nitrates during the Front Range Air Pollution and Photochemistry Éxperiment (FRAPPÉ)

Jake Zaragoza; Sara Callahan; Erin E. McDuffie; Jeffrey Kirkland; Patrick Brophy; Lindsi Durrett; Delphine K. Farmer; Yong Zhou; Barkley Cushing Sive; F. Flocke; G. G. Pfister; Christoph Knote; Alex G. Tevlin; Jennifer G. Murphy; Emily V. Fischer

We report on measurements of acyl peroxy nitrates (APNs) obtained from two ground sites and the NSF/NCAR C-130 aircraft during the 2014 Front Range Air Pollution and Photochemistry Experiment (FRAPPE). The relative abundance of the APNs observed at the Boulder Atmospheric Observatory (BAO) indicates that anthropogenic emissions of volatile organic compounds (VOCs) are the dominant drivers of photochemistry during days with the most elevated PAN. Reduced major axis regression between PPN and PAN observed at BAO and from the C-130 produced a slope of 0.21 (R2 = 0.92). Periods of lower PPN/PAN ratios (~0.10) were associated with cleaner background air characterized by lower ammonia and formic acid abundances. The abundance of MPAN relative to PAN only exceeded 0.05 at BAO when PAN mixing ratios were < 300 pptv, implying low influence of isoprene oxidation during periods with substantial local PAN production. We show an example of a day (19 July) where high O3 was not accompanied by enhanced local PAN production. The contribution of biogenic VOCs to local O3 production on the other days in July with elevated O3 (22, 23, 28 and 29 July 2014) was small; evidence is provided in the high abundance of PPN to PAN (slopes between 0.18 – 0.26). The PAN chemistry observed from surface and aircraft platforms during FRAPPE implies that anthropogenic VOCs played a dominant role in PAN production during periods with the most O3, and that the relative importance of biogenic hydrocarbon chemistry decreased with increasing O3 production during FRAPPE.


Environmental Science & Technology | 2017

Primary and Secondary Sources of Gas-Phase Organic Acids from Diesel Exhaust

Beth Friedman; Michael F. Link; S. Ryan Fulgham; Patrick Brophy; Abril A. Galang; William H. Brune; Shantanu H. Jathar; Delphine K. Farmer

Organic acids have primary and secondary sources in the atmosphere, impact ecosystem health, and are useful metrics for identifying gaps in organic oxidation chemistry through model-measurement comparisons. We photooxidized (OH oxidation) primary emissions from diesel and biodiesel fuel types under two engine loads in an oxidative flow reactor. formic, butyric, and propanoic acids, but not methacrylic acid, have primary and secondary sources. Emission factors for these gas-phase acids varied from 0.3-8.4 mg kg-1 fuel. Secondary chemistry enhanced these emissions by 1.1 (load) to 4.4 (idle) × after two OH-equivalent days. The relative enhancement in secondary organic acids in idle versus loaded conditions was due to increased precursor emissions, not faster reaction rates. Increased hydrocarbon emissions in idle conditions due to less complete combustion (associated with less oxidized gas-phase molecules) correlated to higher primary organic acid emissions. The lack of correlation between organic aerosol and organic acid concentrations downstream of the flow reactor indicates that the secondary products formed on different oxidation time scales and that despite being photochemical products, organic acids are poor tracers for secondary organic aerosol formation from diesel exhaust. Ignoring secondary chemistry from diesel exhaust would lead to underestimates of both organic aerosol and gas-phase organic acids.


Journal of the American Society for Mass Spectrometry | 2018

Ion-neutral Clustering of Bile Acids in Electrospray Ionization Across UPLC Flow Regimes

Patrick Brophy; Corey D. Broeckling; James P. Murphy; Jessica E. Prenni

AbstractBile acid authentic standards were used as model compounds to quantitatively evaluate complex in-source phenomenon on a UPLC-ESI-TOF-MS operated in the negative mode. Three different diameter columns and a ceramic-based microfluidic separation device were utilized, allowing for detailed descriptions of bile acid behavior across a wide range of flow regimes and instantaneous concentrations. A custom processing algorithm based on correlation analysis was developed to group together all ion signals arising from a single compound; these grouped signals produce verified compound spectra for each bile acid at each on-column mass loading. Significant adduction was observed for all bile acids investigated under all flow regimes and across a wide range of bile acid concentrations. The distribution of bile acid containing clusters was found to depend on the specific bile acid species, solvent flow rate, and bile acid concentration. Relative abundancies of each cluster changed non-linearly with concentration. It was found that summing all MS level (low collisional energy) ions and ion-neutral adducts arising from a single compound improves linearity across the concentration range (0.125–5 ng on column) and increases the sensitivity of MS level quantification. The behavior of each cluster roughly follows simple equilibrium processes consistent with our understanding of electrospray ionization mechanisms and ion transport processes occurring in atmospheric pressure interfaces. Graphical Abstractᅟ


Atmospheric Chemistry and Physics | 2018

Tropospheric sources and sinks of gas-phase acids in the Colorado Front Range

James Mattila; Patrick Brophy; Jeffrey Kirkland; Samuel R. Hall; Kirk Ullmann; Emily V. Fischer; Steve Brown; Erin E. McDuffie; Alex G. Tevlin; Delphine K. Farmer

We measured organic and inorganic gas-phase acids in the Front Range of Colorado to better understand their tropospheric sources and sinks using a high-resolution time-of-flight chemical ionization mass spectrometer. Measurements were conducted from 4 to 13 August 2014 at the Boulder Atmospheric Observatory during the Front Range Air Pollution and Photochemistry Éxperiment. Diurnal increases in mixing ratios are consistent with photochemical sources of HNO3, HNCO, formic, propionic, butyric, valeric, and pyruvic acid. Vertical profiles taken on the 300 m tower demonstrate net surface-level emissions of alkanoic acids, but net surface deposition of HNO3 and pyruvic acid. The surface-level alkanoic acid source persists through both day and night, and is thus not solely photochemical. Reactions between O3 and organic surfaces may contribute to the surface-level alkanoic acid source. Nearby traffic emissions and agricultural activity are a primary source of propionic, butyric, and valeric acids, and likely contribute photochemical precursors to HNO3 and HNCO. The combined diel and vertical profiles of the alkanoic acids and HNCO are inconsistent with dry deposition and photochemical losses being the only sinks, suggesting additional loss mechanisms.


Atmospheric Chemistry and Physics | 2015

A large and ubiquitous source of atmospheric formic acid

Dylan B. Millet; Munkhbayar Baasandorj; Delphine K. Farmer; Joel A. Thornton; K. Baumann; Patrick Brophy; S. Chaliyakunnel; J. A. de Gouw; Martin Graus; Lu Hu; Abigail Koss; B. H. Lee; Felipe D. Lopez-Hilfiker; J. A. Neuman; Fabien Paulot; J. Peischl; I. B. Pollack; T. B. Ryerson; Carsten Warneke; Brent J. Williams; Jun-Wei Xu


Atmospheric Measurement Techniques | 2016

Clustering, methodology, and mechanistic insights into acetate chemical ionization using high-resolution time-of-flight mass spectrometry

Patrick Brophy; Delphine K. Farmer


Journal of Geophysical Research | 2017

Observations of Acyl Peroxy Nitrates During the Front Range Air Pollution and Photochemistry Éxperiment (FRAPPÉ): Colorado Front Range PAN

Jake Zaragoza; Sara Callahan; Erin E. McDuffie; Jeffrey Kirkland; Patrick Brophy; Lindsi Durrett; Delphine K. Farmer; Yong Zhou; Barkley Cushing Sive; F. Flocke; G. G. Pfister; Christoph Knote; Alex G. Tevlin; Jennifer G. Murphy; Emily V. Fischer

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Beth Friedman

Colorado State University

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Abril A. Galang

Colorado State University

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Michael F. Link

Colorado State University

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Erin E. McDuffie

University of Colorado Boulder

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