Network


Latest external collaboration on country level. Dive into details by clicking on the dots.

Hotspot


Dive into the research topics where Paul A. De Sousa is active.

Publication


Featured researches published by Paul A. De Sousa.


Biology of Reproduction | 2001

Evaluation of Gestational Deficiencies in Cloned Sheep Fetuses and Placentae

Paul A. De Sousa; Tim King; Linda Harkness; Lorraine E. Young; Simon K. Walker; Ian Wilmut

Abstract Sheep fetal development at 35 days of gestation was examined following natural mating, in vitro production (IVP) of fertilized embryos, or somatic cell nuclear transfer (NT). Five crossbred (Blackface × Black Welsh) and four purebred (Black Welsh) fetuses and their associated placentae produced by natural mating were morphologically normal and consistent with each other. From 10 ewes receiving 21 IVP embryos, 17 fetuses (81%) were recovered, and 15 of these (88%) were normal. The NT fetuses were derived from two Black Welsh fetal fibroblast cell lines (BLW1 and 6). Transfer of 21 BLW1 and 22 BLW6 NT embryos into 12 and 11 ewes, respectively, yielded 7 (33%) and 8 (36%) fetuses, respectively. Only three (43%) BLW1 and two (25%) BLW6 NT fetuses were normal, with the rest being developmentally retarded. The NT fetal and placental deficiencies included liver enlargement, dermal hemorrhaging, and lack of placental vascular development reflected by reduced or absent cotyledonary structures. Fibroblasts isolated from normal and abnormal cloned fetuses did not differ in their karyotype from sexually conceived fetuses or nuclear donor cell lines. Our results demonstrate that within the first quarter of gestation, cloned fetuses are characterized by a high incidence of developmental retardation and placental insufficiency. These deficiencies are not linked to gross defects in chromosome number.


Biology of Reproduction | 2002

Somatic cell nuclear transfer in the pig: Control of pronuclear formation and integration with improved methods for activation and maintenance of pregnancy

Paul A. De Sousa; J.R. Dobrinsky; Jie Zhu; Alan Archibald; Alison Ainslie; Wim Bosma; June Bowering; John Bracken; Patricia M. Ferrier; Judy Fletcher; Bianca Gasparrini; Linda Harkness; Paul Johnston; Marjorie Ritchie; William A. Ritchie; Ailsa Travers; David F. Albertini; Andras Dinnyes; Timothy James King; Ian Wilmut

Abstract To clone a pig from somatic cells, we first validated an electrical activation method for use on ovulated oocytes. We then evaluated delayed versus simultaneous activation (DA vs. SA) strategies, the use of 2 nuclear donor cells, and the use of cytoskeletal inhibitors during nuclear transfer. Using enucleated ovulated oocytes as cytoplasts for fetal fibroblast nuclei and transferring cloned embryos into a recipient within 2 h of activation, a 2-h delay between electrical fusion and activation yielded blastocysts more reliably and with a higher nuclear count than did SA. Comparable rates of development using DA were obtained following culture of embryos cloned from ovulated or in vitro-matured cytoplasts and fibroblast or cumulus nuclei. Treatment of cloned embryos with cytochalasin B (CB) postfusion and for 6 h after DA had no impact on blastocyst development as compared with CB treatment postfusion only. Inclusion of a microtubule inhibitor such as nocodozole with CB before and after DA improved nuclear retention and favored the formation of single pronuclei in experiments using a membrane dye to reliably monitor fusion. However, no improvement in blastocyst development was observed. Using fetal fibroblasts as nuclear donor cells, a live cloned piglet was produced in a pregnancy that was maintained by cotransfer of parthenogenetic embryos.


Biology of Reproduction | 2000

Impact of Bovine Oocyte Maturation Media on Oocyte Transcript Levels, Blastocyst Development, Cell Number, and Apoptosis

Andrew J. Watson; Paul A. De Sousa; Anita Caveney; Lisa C. Barcroft; David R. Natale; Jennifer C. Urquhart; Mark E. Westhusin

Abstract The objectives were 1) to investigate the effects of oocyte maturation in serum-free and amino acid-supplemented defined media on oocyte transcript levels, blastocyst cell number, and apoptosis; 2) to investigate the influence of oocyte maturation culture atmosphere on blastocyst development, total cell number, and apoptosis; and 3) to examine the influence of epidermal growth factor (EGF) during oocyte maturation on blastocyst cell number and apoptosis. The results demonstrate that blastocysts derived from in vitro maturation, fertilization, and embryo culture protocols undergo apoptosis but that apoptotic levels are not greatly influenced by the oocyte maturation environment. Amino acid supplementation of oocyte maturation media was associated with enhanced developmental frequencies, increased blastocyst cell number, and elevated oocyte maternal mRNA levels. Oocyte maturation with supplemented synthetic oviduct fluid medium (cSOFMaa) resulted in blastocyst cell numbers comparable to those observed with Tissue Culture Medium 199 + newborn calf serum. Blastocyst development was reduced following oocyte maturation under a 5% CO2, 7% O2, 88% N2 culture atmosphere. EGF supplementation of oocyte maturation medium resulted in a concentration-dependent increase in blastocyst development but did not influence blastocyst total cell number or apoptosis. Our findings indicate that cSOFMaa medium is an effective base medium for bovine oocyte maturation.


Cell Research | 2011

Lineage-specific distribution of high levels of genomic 5-hydroxymethylcytosine in mammalian development

Alexey Ruzov; Yanina Tsenkina; Andrea Serio; Tatiana Dudnakova; Judy Fletcher; Yu Bai; Tatiana Chebotareva; Steve Pells; Zara Hannoun; Gareth J. Sullivan; Siddharthan Chandran; David C. Hay; Mark Bradley; Ian Wilmut; Paul A. De Sousa

Methylation of cytosine is a DNA modification associated with gene repression. Recently, a novel cytosine modification, 5-hydroxymethylcytosine (5-hmC) has been discovered. Here we examine 5-hmC distribution during mammalian development and in cellular systems, and show that the developmental dynamics of 5-hmC are different from those of 5-methylcytosine (5-mC); in particular 5-hmC is enriched in embryonic contexts compared to adult tissues. A detectable 5-hmC signal appears in pre-implantation development starting at the zygote stage, where the paternal genome is subjected to a genome-wide hydroxylation of 5-mC, which precisely coincides with the loss of the 5-mC signal in the paternal pronucleus. Levels of 5-hmC are high in cells of the inner cell mass in blastocysts, and the modification colocalises with nestin-expressing cell populations in mouse post-implantation embryos. Compared to other adult mammalian organs, 5-hmC is strongly enriched in bone marrow and brain, wherein high 5-hmC content is a feature of both neuronal progenitors and post-mitotic neurons. We show that high levels of 5-hmC are not only present in mouse and human embryonic stem cells (ESCs) and lost during differentiation, as has been reported previously, but also reappear during the generation of induced pluripotent stem cells; thus 5-hmC enrichment correlates with a pluripotent cell state. Our findings suggest that apart from the cells of neuronal lineages, high levels of genomic 5-hmC are an epigenetic feature of embryonic cell populations and cellular pluri- and multi-lineage potency. To our knowledge, 5-hmC represents the first epigenetic modification of DNA discovered whose enrichment is so cell-type specific.


BioMed Research International | 2010

Dielectrophoresis: A Review of Applications for Stem Cell Research

Ronald Pethig; Anoop Menachery; Steve Pells; Paul A. De Sousa

Dielectrophoresis can discriminate distinct cellular identities in heterogeneous populations, and monitor cell state changes associated with activation and clonal expansion, apoptosis, and necrosis, without the need for biochemical labels. Demonstrated capabilities include the enrichment of haematopoetic stem cells from bone marrow and peripheral blood, and adult stem cells from adipose tissue. Recent research suggests that this technique can predict the ultimate fate of neural stem cells after differentiation before the appearance of specific cell-surface proteins. This review summarises the properties of cells that contribute to their dielectrophoretic behaviour, and their relevance to stem cell research and translational applications.


Nature Communications | 2013

A thermoresponsive and chemically defined hydrogel for long-term culture of human embryonic stem cells

Rong Zhang; Heidi K. Mjoseng; Marieke A. Hoeve; Nina G. Bauer; Steve Pells; Rut Besseling; Srinivas Velugotla; Guilhem Tourniaire; Ria E. B. Kishen; Yanina Tsenkina; Chris Armit; Cairnan R.E. Duffy; Martina Helfen; Frank Edenhofer; Paul A. De Sousa; Mark Bradley

Cultures of human embryonic stem cell typically rely on protein matrices or feeder cells to support attachment and growth, while mechanical, enzymatic or chemical cell dissociation methods are used for cellular passaging. However, these methods are ill defined, thus introducing variability into the system, and may damage cells. They also exert selective pressures favouring cell aneuploidy and loss of differentiation potential. Here we report the identification of a family of chemically defined thermoresponsive synthetic hydrogels based on 2-(diethylamino)ethyl acrylate, which support long-term human embryonic stem cell growth and pluripotency over a period of 2–6 months. The hydrogels permitted gentle, reagent-free cell passaging by virtue of transient modulation of the ambient temperature from 37 to 15 °C for 30 min. These chemically defined alternatives to currently used, undefined biological substrates represent a flexible and scalable approach for improving the definition, efficacy and safety of human embryonic stem cell culture systems for research, industrial and clinical applications.


Biology of Reproduction | 2002

Germinal Vesicle Material Is Essential for Nucleus Remodeling after Nuclear Transfer

Shaorong Gao; Bianca Gasparrini; Michelle McGarry; Tricia Ferrier; Judy Fletcher; Linda Harkness; Paul A. De Sousa; Ian Wilmut

Abstract Successful cloning by nuclear transfer has been reported with somatic or embryonic stem (ES) cell nucleus injection into enucleated mouse metaphase II oocytes. In this study, we enucleated mouse oocytes at the germinal vesicle (GV) or pro-metaphase I (pro-MI) stage and cultured the cytoplasm to the MII stage. Nuclei from cells of the R1 ES cell line were injected into both types of cytoplasm to evaluate developmental potential of resulting embryos compared to MII cytoplasmic injection. Immunocytochemical staining revealed that a spindle started to organize 30 min after nucleus injection into all three types of cytoplasm. A well-organized bipolar spindle resembling an MII spindle was present in both pro-MI and MII cytoplasm 1 h after injection with ES cells. However, in the mature GV cytoplasm, chromosomes were distributed throughout the cytoplasm and a much bigger spindle was formed. Pseudopronucleus formation was observed in pro-MI and MII cytoplasm after activation treatment. Although no pronucleus formation was found in GV cytoplasm, chromosomes segregated into two groups in response to activation. Only 8.1% of reconstructed embryos with pro-MI cytoplasm developed to the morula stage after culture in CZB medium. In contrast, 53.5% of embryos reconstructed with MII cytoplasm developed to the morula/blastocyst stage, and 5.3% of transferred embryos developed to term. These results indicate that GV material is essential for nucleus remodeling after nuclear transfer.


Molecular Reproduction and Development | 1998

Analysis of variation in relative mRNA abundance for specific gene transcripts in single bovine oocytes and early embryos.

Paul A. De Sousa; Mark E. Westhusin; Andrew J. Watson

Variation in the abundance of a specific gene transcript was assessed in single bovine oocytes and in vitro–derived blastocysts. Transcripts encoding the Na+,K+‐ATPase α1 subunit were detected by reverse‐transcription polymerase chain reaction (RT‐PCR) and quantified relative to an exogenously supplied rabbit α‐globin mRNA using laser‐induced fluorescence capillary electrophoresis (LIF‐CE). The precision of this relative abundance (RA) calculation was predicted and shown to resolve 2‐fold differences in transcript abundance between individual blastocysts and predicted in oocytes to resolve 3‐fold differences. The RA of the α1 subunit transcript differed by 2‐ to 3‐fold among blastocysts, and 3‐ to 6‐fold among oocytes. Comparison of a general population of oocytes with blastocysts revealed little overlap in RA values between the two groups, with a 8‐ to 14‐fold increase in the mean RA for each group with development observed in two successive experiments (P ≤ 0.05). In contrast, oocytes selected for their developmental competence on the basis of morphologic criteria exhibited only a 1.6‐ to 1.7‐fold developmental increase when the assay was performed on cDNA generated from either embryo pools (n = 6 versus 6) or individuals (n = 7 versus 7), respectively. These results provide the first characterization of the degree of heterogeneity in the abundance of a specific mRNA transcript among individual mammalian oocytes and preimplantation embryos and demonstrate that transcript relative abundance can be correlated with bovine oocyte morphology. Mol. Reprod. Dev. 49:119–130, 1998.


Nature Cell Biology | 2003

Proliferative lifespan is conserved after nuclear transfer

A. John Clark; Patricia M. Ferrier; Samena Aslam; Sarah Burl; Chris Denning; Diana Wylie; Arlene Ross; Paul A. De Sousa; Ian Wilmut; Wei Cui

Cultured primary cells exhibit a finite proliferative lifespan, termed the Hayflick limit. Cloning by nuclear transfer can reverse this cellular ageing process and can be accomplished with cultured cells nearing senescence. Here we describe nuclear transfer experiments in which donor cell lines at different ages and with different proliferative capacities were used to clone foetuses and animals from which new primary cell lines were generated. The rederived lines had the same proliferative capacity and rate of telomere shortening as the donor cell lines, suggesting that these are innate, genetically determined, properties that are conserved by nuclear transfer.


Cloning and Stem Cells | 2002

Somatic cell nuclear transfer: recent progress and challenges.

Andras Dinnyes; Paul A. De Sousa; Tim King; Ian Wilmut

Somatic cell nuclear transfer (NT) offers new and exciting opportunities in many areas of research and biotechnology. However, the field as a whole is still in its infancy, with continuing inefficiencies in the process proving many early expectations premature. The technical steps of NT are complex, and success is highly susceptible to minor variations. Furthermore, the biological process of reprogramming is not fully understood, making it difficult to optimize the protocols for providing ideal recipient oocytes and donor cells. In this paper, we describe recent advances and novel approaches, which resulted in progress during the last year, including the birth of cloned piglets and farm animals with precise genetic changes. Key problems hindering further progress are addressed.

Collaboration


Dive into the Paul A. De Sousa's collaboration.

Top Co-Authors

Avatar

Ian Wilmut

University of Edinburgh

View shared research outputs
Top Co-Authors

Avatar

Steve Pells

University of Edinburgh

View shared research outputs
Top Co-Authors

Avatar

Mark Bradley

University of Edinburgh

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar

Linda Harkness

University of Southern Denmark

View shared research outputs
Top Co-Authors

Avatar

Rong Zhang

University of Edinburgh

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Researchain Logo
Decentralizing Knowledge