Philip Hugenholtz
University of California, Davis
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Publication
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Standards in Genomic Sciences | 2011
Tanja Woyke; Olga Chertkov; Alla Lapidus; Matt Nolan; Susan Lucas; Tijana Glavina del Rio; Hope Tice; Jan Fang Cheng; Roxanne Tapia; Cliff Han; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Ioanna Pagani; Natalia Ivanova; Marcel Huntemann; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Evelyne Brambilla; Rohde M; Romano Mwirichia; Johannes Sikorski; Brian J. Tindall; Markus Göker; James Bristow
Fluviicola taffensis O’Sullivan et al. 2005 belongs to the monotypic genus Fluviicola within the family Cryomorphaceae. The species is of interest because of its isolated phylogenetic location in the genome-sequenced fraction of the tree of life. Strain RW262T forms a monophyletic lineage with uncultivated bacteria represented in freshwater 16S rRNA gene libraries. A similar phylogenetic differentiation occurs between freshwater and marine bacteria in the family Flavobacteriaceae, a sister family to Cryomorphaceae. Most remarkable is the inability of this freshwater bacterium to grow in the presence of Na+ ions. All other genera in the family Cryomorphaceae are from marine habitats and have an absolute requirement for Na+ ions or natural sea water. F. taffensis is the first member of the family Cryomorphaceae with a completely sequenced and publicly available genome. The 4,633,577 bp long genome with its 4,082 protein-coding and 49 RNA genes is a part of the GenomicEncyclopedia ofBacteria andArchaea project.
Archive | 2006
Cathy Chang; Eric J. Mathur; Michelle Cayouette; Dan E. Robertson; Philip Hugenholtz; Falk Warnecke; Jared R. Leadbetter; Natalia Ivanova; Peter Luginbuhl; Don Hutchison
Archive | 2013
Iain Anderson; Huzuki Teshima; Matt Nolan; Alla Lapidus; Hope Tice; Jan-Fang Cheng; Cliff Han; Roxanne Tapia; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Konstantinos Mavromatis; Ioanna Pagani; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Rohde M; Elke Lang; John C. Detter; Markus Göker; Tanja Woyke; Jonathan A. Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk
Archive | 2011
Athanasios Lykidis; Chia-Lung Chen; Susannah G. Tringe; Alice C. McHardy; Alex Copeland; Nikos C. Kyrpides; Philip Hugenholtz; Alejandro Olmos; Oscar Monroy; Wen Tso Liu
Archive | 2010
Natalia Ivanova; Susannah G. Tringe; Konstantinos Liolios; Wen Tso Liu; Norman Morrison; Philip Hugenholtz; Nikos C. Kyrpides
Archive | 2007
Cathy Chang; Eric J. Mathur; Michelle Cayouette; Dan E. Robertson; Philip Hugenholtz; Falk Warnecke; Jared R. Leadbetter; Natalia Ivanova; Peter Luginbuhl; Don Hutchison
Archive | 2006
Alice C. McHardy; Hector Garcia Martin; Aristotelis Tsirigos; Philip Hugenholtz; Isidore Rigoutsos
Archive | 2006
Victor Markowitz; Frank Korzeniewski; Krishna Palaniappan; Ernest Szeto; Natalia Ivanova; Nikos C. Kyrpides; Philip Hugenholtz
Archive | 2006
Alice C. McHardy; Hector Garcia Martin; Aristotelis Tsirigos; Philip Hugenholtz; Isidore Rigoutsos
ISMB 2006, Fortaleza, Brazil, Aug 6-10,2006 | 2006
Victor Markowitz; Frank Korzeniewski; Krishna Palaniappan; Ernest Szeto; Natalia Ivanova; Nikos C. Kyrpides; Philip Hugenholtz
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