Pooran M. Gaur

Effect of high temperature on the reproductive development of chickpea genotypes under controlled environments

High temperature during the reproductive stage in chickpea (Cicer arietinum L.) is a major cause of yield loss. The objective of this research was to determine whether that variation can be explained by differences in anther and pollen development under heat stress: the effect of high temperature during the pre- and post-anthesis periods on pollen viability, pollen germination in a medium, pollen germination on the stigma, pollen tube growth and pod set in a heat-tolerant (ICCV 92944) and a heat-sensitive (ICC 5912) genotype was studied. The plants were evaluated under heat stress and non-heat stress conditions in controlled environments. High temperature stress (29/16°C to 40/25°C) was gradually applied at flowering to study pollen viability and stigma receptivity including flower production, pod set and seed number. This was compared with a non-stress treatment (27/16°C). The high temperatures reduced pod set by reducing pollen viability and pollen production per flower. The ICCV 92944 pollen was viable at 35/20°C (41% fertile) and at 40/25°C (13% fertile), whereas ICC 5912 pollen was completely sterile at 35/20°C with no in vitro germination and no germination on the stigma. However, the stigma of ICC 5912 remained receptive at 35/20°C and non-stressed pollen (27/16°C) germinated on it during reciprocal crossing. These data indicate that pollen grains were more sensitive to high temperature than the stigma in chickpea. High temperature also reduced pollen production per flower, % pollen germination, pod set and seed number.

Heat-stress-induced reproductive failures in chickpea (Cicer arietinum) are associated with impaired sucrose metabolism in leaves and anthers

Chickpea (Cicer arietinum L.), in its reproductive stage, is sensitive to heat stress (32/20°C or higher as day/night temperatures) with consequent substantial loss of potential yields at high temperatures. The physiological mechanisms associated with reproductive failures have not been established: they constitute the basis of this study. Here, we initially screened a large core-collection of chickpea against heat stress and identified two heat-tolerant (ICC15614, ICCV. 92944) and two heat-sensitive (ICC10685, ICC5912) genotypes. These four genotypes were sown during the normal time of sowing (November-March) and also late (February-April) to expose them to heat stress during reproductive stage (>32/20°C). The genotypes were assessed for damage by heat stress to the leaves and reproductive organs using various indicators of stress injury and reproductive function. In the heat-stressed plants, phenology accelerated as days to flowering and podding, and biomass decreased significantly. The significant reduction in pod set (%) was associated with reduced pollen viability, pollen load, pollen germination (in vivo and in vitro) and stigma receptivity in all four genotypes. Heat stress inhibited pollen function more in the sensitive genotypes than in the tolerant ones, and consequently showed significantly less pod set. Heat stress significantly reduced stomatal conductance, leaf water content, chlorophyll, membrane integrity and photochemical efficiency with a larger effect on heat-sensitive genotypes. Rubisco (carbon-fixing enzyme) along with sucrose phosphate synthase (SPS) and sucrose synthase (SS) (sucrose-synthesising enzymes) decreased significantly in leaves due to heat stress leading to reduced sucrose content. Invertase, a sucrose-cleaving enzyme, was also inhibited along with SPS and SS. The inhibition of these enzymes was significantly greater in the heat-sensitive genotypes. Concurrently, the anthers of these genotypes had significantly less SPS and SS activity and thus, sucrose content. As a result, pollen had considerably lower sucrose levels, resulting in reduced pollen function, impaired fertilisation and poor pod set in heat-sensitive genotypes.

High temperature tolerance in chickpea and its implications for plant improvement

Abstract. Chickpea (Cicer arietinum L.) is an important food legume and heat stress affects chickpea ontogeny over a range of environments. Generally, chickpea adapts to high temperatures through an escape mechanism. However, heat stress during reproductive development can cause significant yield loss. The most important effects on the reproductive phase that affect pod set, seed set and yield are: (1) flowering time, (2) asynchrony of male and female floral organ development, and (3) impairment of male and female floral organs. While this review emphasises the importance of high temperatures >30°C, the temperature range of 32–35°C during flowering also produces distinct effects on grain yield. Recent field screening at ICRISAT have identified several heat-tolerant germplasm, which can be used in breeding programs for improving heat tolerance in chickpea. Research on the impact of heat stress in chickpea is not extensive. This review describes the status of chickpea production, the effects of high temperature on chickpea, and the opportunities for genetic improvement of chickpea tolerance to high temperatures.

Variation in carbon isotope discrimination and its relationship with harvest index in the reference collection of chickpea germplasm

Terminal drought is a major constraint to chickpea productivity. Carbon isotope discrimination (Δ13C), an integrator of plant behaviour influencing transpiration efficiency (TE), is an important component of yield under drought. The variation in Δ13C and its association with yield was assessed in the reference collection of chickpea germplasm. Drought stress reduced shoot biomass by 36-39% and grain yield by 23%. Mean Δ13C was low and the range of genetic variation was high under drought stress. Largely, high Δ13C accessions were early in flowering (40-50 days), moderate in shoot biomass, high in seed yields and high in harvest index (HI). Δ13C was positively correlated with seed yield in both the years under drought stress, only in 2008-09 under optimal irrigation. This positive association was very close with HI. Among the yield components, Δ13C was closely associated with pod numbers per unit area and seed size under drought stress. Path coefficients showed no direct association of Δ13C with grain yield but an indirect negative association through shoot biomass at maturity and a close positive association through HI. The closest association of HI or shoot biomass was seen in the maturity group of accessions that experienced the optimum terminal drought stress.

Data on draft genome sequence of chickpea (Cicer arietinum)

The dataset contains genome sequence of the ~738 Mb chickpea genome from CDC Frontier, a kabuli variety, which contains an estimated 28,269 genes. Re-sequencing and analysis of 90 cultivated and wild genotypes from 10 different countries identifies both targets of breeding-associated genetic sweeps and targets of breeding-associated balancing selection. Candidate genes for disease resistance and agronomic traits are highlighted, including traits that distinguish the two main classes of cultivated chickpea- desi and kabuli. These data comprise a resource for chickpea improvement through molecular breeding, and provide insights into both genome diversity and domestication. GBrowse Visualization Links: Chickpea genome at LIS Research Article

Chickpea Individual and consensus genetic maps for ICC 283 x ICC 826, ICC 4958 x ICC 1882

Analysis of phenotypic data for 20 drought tolerance traits in 1–7 seasons at 1–5 locations together with genetic mapping data for two mapping populations provided 9 QTL clusters of which one present on CaLG04 has a high potential to enhance drought tolerance in chickpea improvement. CMap Visualization Links: ICC 283 x ICC 8261 ICC 4958 x ICC 1882 Consensus map

Chickpea genetic map comprising 1328 marker loci

A second-generation genetic map comprising 1328 marker loci including novel 625 CKAMs, 314 TOG-SNPs and 389 published marker loci with an average inter-marker distance of 0.59 cM. CMap Visualization Links: 1328 loci map DOI: doi:10.1111/j.1467-7652.2012.00710.x

Intra-specific genetic map of ICC 4958 x ICC 1882 by Genotyping-By-Sequencing approach

To enhance the marker density in the “QTL-hotspot” region, harboring several QTLs for drought tolerance-related traits identified on linkage group 04 (CaLG04) in chickpea recombinant inbred line (RIL) mapping population ICC 4958 × ICC 1882, a genotyping-by-sequencing approach was adopted. In total, 6.24 Gb data from ICC 4958, 5.65 Gb data from ICC 1882 and 59.03 Gb data from RILs were generated, which identified 828 novel single-nucleotide polymorphisms (SNPs) for genetic mapping. Together with these new markers, a high-density intra-specific genetic map was developed that comprised 1,007 marker loci spanning a distance of 727.29 cM. QTL analysis using the extended genetic map along with precise phenotyping data for 20 traits collected over one to seven seasons identified 49 SNP markers in the “QTL-hotspot” region. These efforts have refined the “QTL-hotspot” region to 14 cM. In total, 164 main-effect QTLs including 24 novel QTLs were identified. CMap Visualization Links: GBS-SNP Map_ICC 4958 x ICC 1882

Genetic map of ICC 4958 (C. arietinum) × PI 489777 (C. reticulatum) with 1291 markers

This dataset contains genetic map data developed based on recombinant inbred line (RIL) population ICC 4958 (C. arietinum) x PI 489777 (C. reticulatum). This map consists of 1,291 markers on eight linkage groups (LGs) spanning a total of 845.56 cM. The number of markers per linkage group ranged from 68 (LG 8) to 218 (LG 3) with an average inter-marker distance of 0.65 cM. While the developed resource of molecular markers will be useful for genetic diversity, genetic mapping and molecular breeding applications, the comprehensive genetic map with integrated BES-SSR markers will facilitate its anchoring to the physical map (under construction) to accelerate map-based cloning of genes in chickpea and comparative genome evolution studies in legumes. CMap Visualization Links: ICC4958 x PI 489777 DOI: doi:10.1371/journal.pone.0027275

Additional file 12: of Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Genome-wide variations identified in chickpea genotypes tolerant or susceptible to salinity. Circos diagram represents line specific variations. Each circos represents eight chickpea pseudomolecules and consists of four concentric rings where A represents SNPs, B represents Indels, C represents deletion and D represents duplication events. The deletion events are marked with triangles in green ring and circles represent duplications in red. The green, red, blue, and yellow color inside all rings represents ICC 1431 (tolerant), JG 62 (tolerant), ICC 6263 (susceptible), JG 11 (tolerant) respectively. (PNG 3400Âxa0kb)