R. La Ferla

Seasonal and spatial distribution of bacterial production and biomass along a salinity gradient (Northern Adriatic Sea)

The Adriatic Sea is a semi-enclosed ecosystem that receives in itsshallow part, the northern basin, significant freshwater inputs whichmarkedly increase its productivity with respect to the oligotrophic featuresof the Mediterranean sea. In this area, especially on the western coastwhere river plumes diffuse, high physical (density) and chemical (nutrients)gradients occur on a small scale, both horizontal and vertical. Results ofbacterial production as 3H-thymidine incorporation, bacterialabundance as DAPI direct count, autotrophic biomass as chlorophyll a andtotal biomass as ATP from three areas in the Northern Adriatic Sea arereported. The three sites, differently influenced by the river waterdiffusion, were sampled seasonally over two days, every 24 h, in foursurveys from April 1995 to January 1996. Bacterioplankton production,strongly correlated with primary production, was extremely high near thecoast in low-salinity, high-nutrient waters, mostly as an indirectconsequence of riverine inputs causing an increase in phytoplanktonproduction stimulated by physically driven nutrient inputs. In the warmmonths bacterial activity was higher than in cold months. While bacteriaabundance did not appear related to the salinity gradients, bacterialproduction (from 0.6 to 372 pM 3H-thymidine h™1incorporated, corresponding to 0.01–8.2 µg C l™1h™1) and the relative generation times (from 0.2 to 35 days)showed a high range of values, representing a variety of situations, fromestuaries to the ocean. The resulting role of the bacterial community in thecarbon cycle is very consistent, processing amounts of carbon which havebeen estimated as high as the 80% and the 260% of thosesynthesized by autotrophs in summer and winter, respectively.

Enzymatic Activities and Prokaryotic Abundance in Relation to Organic Matter along a West–East Mediterranean Transect (TRANSMED Cruise)

The distribution of extracellular enzymatic activities (EEA) [leucine aminopeptidase (LAP), ß-glucosidase (GLU), alkaline phosphatase (AP)], as well as that of prokaryotic abundance (PA) and biomass (PB), dissolved organic carbon (DOC), particulate organic carbon and particulate total nitrogen (POC, PTN), was determined in the epi-, meso-, and bathypelagic waters of the Mediterranean Sea along a West–East transect and at one Atlantic station located outside the Strait of Gibraltar. This study represents a synoptical evaluation of the microbial metabolism during early summer. Decreasing trends with depth were observed for most of the parameters (PA, PB, AP, DOC, POC, PTN). Significant differences between the western and eastern basins of the Mediterranean Sea were found, displaying higher rates of LAP and GLU and lower C/N ratios more in the eastern than in the western areas. Conversely, in the epipelagic layer, PA and PB were found to be higher in the western than in the eastern basins. PB was significantly related to DOC concentration (all data, n = 145, r = 0.53, P < 0.01), while significant correlations of EEA with POC and PTN were found in the epipelagic layer, indicating an active response of microbial metabolism to organic substrates. Specific enzyme activities normalized to cell abundance pointed out high values of LAP and GLU in the bathypelagic layer, especially in the eastern basin, while cell-specific AP was high in the epi- and bathypelagic zone of the eastern basin indicating a rapid regeneration of inorganic P for both prokaryotes and phytoplankton needs. Low activity and abundance characterized the Atlantic station, while opposite trends of these parameters were observed along the Mediterranean transect, showing the uncoupling between abundance and activity data. In the east Mediterranean Sea, decomposition processes increased probably in response to mesoscale structures which lead to organic matter downwelling.

Dynamics of extracellular enzymatic activities in a shallow Mediterranean ecosystem (Tindari ponds, Sicily)

Three microbial extracellular enzymes, leucine aminopeptidase (LAP), β-glucosidase (β-glu) and alkaline phosphatase (AP), were studied in six small Mediterranean littoral ponds, to evaluate the diversity of microbial activities relative to prevailing environmental conditions. The marked diversification of the trophic states, ranging from oligotrophy to eutrophy, in the ponds was reflected in a range of enzyme patterns at different spatial and temporal scales. There were higher levels and greater variability of microbial activity in the oldest and most ‘confined’ ponds (ranges: 0.55–4360.00 nm h−1, 0.15–76.44 nm h−1, 1.29–1600.00 nm h−1 for LAP, β-glu and AP respectively) compared with the youngest and most seaward ponds (ranges: 22.64–612.0 nm h−1, 0.06–48.89 nm h−1, 0.32–744.0 nm h−1 for LAP, β-glu and AP respectively). The close relationship of the degradative potential with chlorophyll-a and particulate organic carbon could be a consequence of the stimulating effect of phytoplankton-released polymeric compounds (organic matter) and/or a response of the microbial community to warm temperatures, which were recorded from July to September. Within an area less than 1 km2, different aquatic ecosystems coexist and maintain their distinctive properties in terms of microbial biogeochemical processes.

Particulate matter composition and bacterial distribution in Terra Nova Bay (Antarctica) during summer 1989–1990

Spatial distributions of particulate organic matter (POM) and microbes were investigated during the summer of 1989–1990 in the coastal waters of Terra Nova Bay (Antarctica). The elemental (organic carbon and nitrogen) and biochemical (lipids, proteins, carbohydrates, DNA and RNA) composition of organic matter was related to bacterioplankton abundance, and pico-phytoplankton density. The ATP concentrations were also measured to gather information about the relationships between particulate matter composition and microbial distribution in Antarctic waters. Total seston was characterized by little spatial variation and was unrelated to the distance from the coast. Suspended particulate matter included some terrestrial components but was mostly composed of autochthonous material. POM was characterized by a uniform distribution and homogeneous composition (mostly of phytoplanktonic origin), and was associated with a relatively scarce microbial community characterized at the surface by high picophytoplankton density. The increase with depth of the living carbon fraction suggested an increase in the microheterotrophic community in the deeper water layers. A significant positive relationship between total bacterioplankton density, and carbohydrate and RNA concentrations was found. Similar significant relationships between pico-phytoplankton abundance and lipids, proteins, carbohydrates and nucleic acids were observed. On the basis of the close coupling found between microbiological and chemical compartments, it seems that, in Terra Nova Bay, bacterial distribution depends on suspended matter and in particular to the labile fraction of the organic detritus.

Deep-chlorophyll maximum time series in the Augusta Gulf (Ionian Sea): Microbial community structures and functions

An integrated study was carried out to follow the temporal evolution of microbiological parameters during a 48 h period, in relation to the deep chlorophyll maximum (DCM) at a coastal station. The micro-organisms showed an active role in the environment and a different distribution, without a clear diel cycle. The phytoplankton community, responsible for the DCM, consisted mainly of diatoms. Their distribution in relation to pycnocline showed an opposite trend with respect to picophytoplankton. Total bacterioplankton contributed to enzymatic degradation of particulated organic carbon (by producing β-glucosidase and aminopeptidase), with peaks related to changes in the main water current. We estimated that about 25% of particulate organic carbon per day may be hydrolysed by bacteria. The living bacterioplankton represented 20% of the total. The picophytoplankton fraction contributed significantly to the high values of alkaline phosphatase, suggesting a fast P regeneration. Respiration showed significant correlations with the physical and chemical parameters as well as with the different planktonic fractions.

Determination of living and active bacterioplankton: a comparison of methods

The purpose of this study was the quantification, through the comparison of different methods, of viable and metabolically active bacteria in marine environments. To quantify the living and active bacterioplankton fractions, we compared the total cell count (TC using DAPI staining), plate count on marine agar (CFU), and three viability-staining methods: nucleoid-containing cell count (NuCC), Live/Dead staining procedure (L/D) and direct viable count (DVC). With respect to TC (mean value 3.0 ± 2.3 × 105 cell ml−1) CFU represented less than 0.1% and DVC cells 1%, both showing significant differences. NuCC and L/D cells were 18.0% and 15.9% of TC, respectively, showing no significant differences and higher percentages in the Ionian Sea than the Adriatic Sea. Moreover, NuCC and L/D were two orders of magnitude greater than the culturable fraction, while active cells (DVC) exceeded CFU by one order of magnitude. The comparison of different staining methods allowed us to confirm the simultaneous presence of different physiological states within the bacterial population in natural marine environments. The NuCC and L/D methods gave comparable values to those of other authors, while the DVC procedure gave lower values than previously reported. This research provides information on the fraction of living and/or metabolically active bacteria in aquatic ecosystems. Since each method has its own detection limits, the study highlights the need to simultaneously compare the different methods to validate their results.

Prokaryotic activities and abundance in pelagic areas of the Ionian Sea

The Ionian Sea represents a suitable basin for studying the biogeochemical processes mediated by microbial activities. Because of its characteristics as a crossing region between the western and eastern Mediterranean Sea, it is one of the sites most affected by changes in water mass composition and dynamics, caused by the Eastern Mediterranean Transient (EMT). To date, relatively few data exist on microbial activities in pelagic areas of the Ionian Sea. From 1998 to 2004, during different research cruises, prokaryotic parameters (abundance, extracellular enzyme activities leucine aminopeptidase, β-glucosidase, alkaline phosphatase, bacterial production and respiration) were measured together with culturable bacteria and the main physical, chemical and trophic parameters (temperature, salinity, nutrients, particulated organic matter). The aim of the study was to describe the spatial and temporal variability in microbial activities involved in the carbon and phosphorus cycles, in different layers. Results showed that organic matter transformation mediated by the microbial community displayed a significant increase in autumn, highlighting the occurrence of significant changes at meso- and bathypelagic depths. Unlike the dark ocean, bacterial growth efficiency in the Ionian Sea, which increased with depth, seemed to vary from being a source of carbon in the epipelagic layer to a sink in the meso- and bathypelagic layers. The mechanism of phosphatase regulation showed a weak inverse correlation between specific phosphatase and inorganic P in all seasons except autumn. It is worth mentioning that the reported results constitute, to the best of our knowledge, one of the available datasets giving information about microbial activities in the Ionian Sea.

Enzymatic Activities and Carbon Flux through the Microbial Compartment in the Adriatic Sea

Carbon flux through the microbial community by the determination of biomass, heterotrophic bacteria, aminopeptidase and respiratory activities has been studied in two areas of the Adriatic sea with different trophic characteristics during four oceanographic surveys, carried out in June 96,97 and February 97,98. In front of the Po delta (area A), the average rates of the carbon released by aminopeptidase activity ranged from 4.9 to 9.9 μg Cl−1 h−1 and near the Ancona coast (area B) from 3.1 to 7.6μg Cl−1 h−1, whereas the microbial respiration as metabolic carbon production (CO2) ranged from 0.19 to 2.29 and from 0.24 to 1.40μg Cl−1 h−1 in the two areas, respectively.

Are prokaryotic cell shape and size suitable to ecosystem characterization

Estimation of microbial biomass depends on cell shape and size determinations, and thus, there is a wide biovolume variability among morphotypes. Nevertheless, data on morphology and morphometry of prokaryotic cells under different trophic status are seldom published, due to the methodological difficulties of cell measurements. The main question addressed in this paper concerns the suitability of prokaryotic size and shape for environmental characterization. Microbial biovolumes were compared among different ecosystems, located in temperate and tropical regions. Samples were taken from fresh, brackish, mixohaline, and estuarine waters that were classified as oligo-, meso-, eu-, and hypertrophic by comparing synoptically different trophic indices. Prokaryotic cell abundance and volume were quantified by Image Analysis, used to calculate biomass, and correlated to environmental variables. Some samples were analyzed by flow cytometry also, and data from sub-populations with a different apparent DNA content were available. Prokaryotic abundances generally increased from oligo- to hypertrophic waters while cell volumes increased from oligotrophic to eutrophic waters. Although significant correlations between cell volumes and environmental variables were detected (positive with salinity and negative with Chlorophyll-a), different morphotypes dominated each studied regions. Our results sustain the hypothesis that prokaryotic cell size and shape could be useful to ecosystem characterization.

Lignicolous marine fungi in the straits of Messina, Italy

The occurrence and distribution of lignicolous marine fungi in the Straits of Messina has been studied. Using submerged panels of pine, beech and poplar, twenty fungal species were identified. The lignicolous mycoflora of the Messina Straits was not significantly different from that reported in the literature for other temperate marine coastal environments, Ascomycotina being frequent, while Basidiomycotina were rare.