R. M. Lewis

Responses to selection for lean growth in sheep

This paper reports the selection responses achieved, and related results, following 9 years of index selection for lean growth in Suffolk sheep. The breeding goal of the index used comprised carcass lean weight and carcass fat weight at a constant age, with relative economic values of + 3 and ‐1 per kg. The selection criteria were live weight (LWT), ultrasonic fat depth (UFD) and ultrasonic muscle depth (UMD) adjusted to a constant age of 150 days. By year 9, responses in LWT, UFD and UMD in both sexes, as judged by the divergence between selection and control line performance, amounted to 4·88 kg, ‐1·1 mm and 2·8 mm respectively ; these responses are between 7 and 15% of the overall means of the traits concerned. Although selection was originally on index scores based on phenotypic records, the retrospective analyses reported here used the mixed model applications of residual maximum likelihood to estimate parameters and best linear unbiased prediction to predict breeding values. The statistical model comprised fixed effects plus random effects accounting for direct additive, maternal additive and temporary environmental variation. Estimated genetic trends obtained by regressing estimated breeding values on year of birth were similar to annual responses estimated by comparing selection and control line means. Estimates of direct heritabilities were 0·054, 0·177, 0·286, 0·561 and 0·410 for birth weight (BWT), weaning weight (WWT), LWT, UFD and UMD respectively. Corresponding estimates of maternal heritabilities were 0·287, 0·205, 0·160, 0·083 and 0·164. Phenotypic correlations between all pairs of traits were positive and usually moderately high. There were low negative direct additive correlations between BWT and WWT, and between BWT and LWT, but higher positive maternal additive correlations between all other pairs of weight traits.

Effects of forage species or concentrate finishing on animal performance, carcass and meat quality

Angus-cross steers (n = 128; initial BW = 270 ± 3.8 kg) were used in a 3-yr study to assess effects of forage species grazed before slaughter versus concentrate finishing on carcass and meat quality. At the completion of the stockering phase, steers were randomly allotted to mixed pasture (MP; n = 36/yr) or corn-silage concentrate (CON; n = 12/yr) finishing treatments. At 40 d before harvest, MP steers were randomly divided into 3 forage species treatments: alfalfa (AL), pearl millet (PM), or mixed pasture (MP). Average daily BW gain was greater (P = 0.001) for CON than for forage-finished (FOR) steers during the early and overall finishing phase. During the late finishing phase when FOR steers were grazing difference forage species, ADG was greater (P = 0.03) for PM than MP or AL. Harvest weight and HCW were greater (P < 0.001) for CON than FOR due to the differences in animal performance. Total fat percentage of the 9th to 11th rib section was 46% less(P = 0.028) for FOR than CON due to reductions (P < 0.001) in the percentage of subcutaneous fat. Warner-Bratzler shear force (WBS) values at 14 d and 28 d of aging did not differ (P > 0.78) between CON and FOR and were not altered (P > 0.40) by forage species. Trained sensory panel juiciness, initial tenderness, and overall tenderness scores did not differ (P > 0.17) by finishing treatment or forage species. Beef flavor intensity was greater (P < 0.001) for CON than FOR. Beef flavor intensity was greater (P < 0.02) for AL and PM than MP. Off-flavor intensity was greater (P < 0.001) for all forage-fed steaks, regardless of forage species, than CON. Finishing on forages reduced (P = 0.003) total lipid content by 61% for the LM compared with CON finished cattle. Forage species grazed before harvest did not alter (P > 0.05) total lipid content of the LM. Oleic acid concentration and total MUFA of the LM were 21% and 22% less (P = 0.001) for FOR than CON. Concentrations of all individual [linolenic acid, eicosapentaenoic (EPA), docosapentaenoic (DPA), and docosadexaenoic (DHA) acids] and total n-3 fatty acids were greater (P < 0.001) for FOR than CON. Finishing on AL increased (P = 0.017) the concentration of linolenic acid compared with MP or PM. The ratio of n-6 to n-3 fatty acids was greater (P = 0.001) for CON than FOR and did not differ (P = 0.88) by forage species. Concentrate finishing increases carcass weight with same time endpoints and accelerates deposition of MUFA in comparison with FOR, which reduces carcass weight and fat deposition but maintains high concentrations of n-3 and CLA fatty acids. Finishing system or forage species grazed 40 d before slaughter did not alter beef tenderness but FOR had greater off-flavors according to both trained and descriptive sensory panelists.

Genetic diversity and population structure in lines of chickens divergently selected for high and low 8-week body weight

A long-term selection experiment for high or low 8-wk BW in White Plymouth Rock chickens was conducted to study effects of selection on BW and correlated characters. Two lines [high (HWS), low (LWS) weight] were established and have undergone 48 generations of selection. The lines were managed to curtail inbreeding and to maintain similar population structures; such is necessary for equitable comparison of selection response between lines. Our objective was to test the success of that breeding strategy by characterizing genetic diversity and inbreeding in these lines. A pedigree of 5,998 individuals was assembled, with 68 founders, 2,962 HWS chickens, and 2,968 LWS chickens. Inbreeding coefficients (F) were calculated for each line. Maximum F was 0.53 and 0.61, mean F was 0.26 (SD 0.15) and 0.30 (SD 0.17), and change in F was 1.3 and 1.6% per generation in LWS and HWS lines, respectively. The effective population size was 38.3 in LWS and 32.1 in HWS lines. The effective number of founders was 15.7 in both lines, and the effective number of ancestors was 17.5 and 15.5 in LWS and HWS lines, respectively. Thirty ancestors accounted for 90% of the genetic makeup of both lines. Seven male and eight female founders still contributed to both lines at generation 48, although some contributed more to one line than the other. Family sizes were similar for males and females of each line, with males having larger family sizes with greater variance. Accumulated inbreeding was high and effective population size was low, as expected in closed lines. Effective number of founders was relatively low compared with actual number of founders, indicating some contributed more than others to the last generation. Family size statistics indicated that fewer males than females were used, leading to the observed levels of inbreeding. Given their similarity in genetic diversity and family size, it can be concluded that breeding decisions throughout the project resulted in similar population structures in the lines.

The use of X-ray computer tomography for measuring the muscularity of live sheep

Jones, H. E., Lewis, R. M., Young, M. J., Wolf, B. T. (2002). The use of X-ray computer tomography for measuring the muscularity of live sheep. Animal Science, 75, (3), 387-399 Sponsorship: DEFRA; SEERAD; BBSRC

Managing the risk of comparing estimated breeding values across flocks or herds through connectedness: a review and application

Comparing predicted breeding values (BV) among animals in different management units (e.g. flocks, herds) is challenging if units have different genetic means. Unbiased estimates of differences in BV may be obtained by assigning base animals to genetic groups according to their unit of origin, but units must be connected to estimate group effects. If many small groups exist, error of BV prediction may be increased. Alternatively, genetic groups can be excluded from the statistical model, which may bias BV predictions. If adequate genetic connections exist among units, bias is reduced. Several measures of connectedness have been proposed, but their relationships to potential bias in BV predictions are not well defined. This study compares alternative strategies to connect small units and assesses the ability of different connectedness statistics to quantify potential bias in BV prediction. Connections established using common sires across units were most effective in reducing bias. The coefficient of determination of the mean difference in predicted BV was a perfect indicator of potential bias remaining when comparing individuals in separate units. However, this measure is difficult to calculate; correlated measures such as prediction errors of differences in unit means and correlations among prediction errors are suggested as practical alternatives.

Changes in muscularity with growth and its relationship with other carcass traits in three terminal Sire breeds of sheep

Data were available for 160 sheep (50 Suffolk males, 50 Suffolk females, 40 Texel males and 20 Charollais males). One-fifth of animals within each breed and sex were slaughtered at each of 14, 18 or 22 weeks of age and two-fifths slaughtered at 26 weeks. After slaughter linear measurements were taken on the carcass. The left side of each carcass was then separated into eight joints and each joint dissected into lean, bone and fat. Five muscularity measures (three for the longissimus thoracis et lumborum (LTL) muscle, one for the hind leg and one for the whole carcass) and one of the shape of the LTL cross-section (depth : width) were calculated. With the exception of one measure for the LTL, muscularity increased with growth. Rates of increase in most measures were higher in Texels than in each of the other breeds, but were not different between the male and female Suffolks or between the Suffolk and Charollais lambs. Increases in most muscularity measures at a constant live weight were associated with increases in lean to bone ratio and carcass lean content. Associations with fat content were either non-significant or negative. Relationships with lean distribution were non-significant or weak. Correlations between the three measures of muscularity for the LTL were high. Correlations between the whole carcass measure and those within different regions were moderate to high in the Texels but lower in the Suffolk and Charollais breeds. The same was true for correlations between the LTL measures and hind leg muscularity. If muscularity throughout the carcass is to be described effectively, measures in more than one region may be required, particularly in the Suffolk and Charollais breeds.

Relationships between quantitative and reproductive fitness traits in animals

The relationships between quantitative and reproductive fitness traits in animals are of general biological importance for the development of population genetic models and our understanding of evolution, and of great direct economical importance in the breeding of farm animals. Two well investigated quantitative traits—body weight (BW) and litter size (LS)—were chosen as the focus of our review. The genetic relationships between them are reviewed in fishes and several mammalian species. We have focused especially on mice where data are most abundant. In mice, many individual genes influencing these traits have been identified, and numerous quantitative trait loci (QTL) located. The extensive data on both unselected and selected mouse populations, with some characterized for more than 100 generations, allow a thorough investigation of the dynamics of this relationship during the process of selection. Although there is a substantial positive genetic correlation between both traits in unselected populations, caused mainly by the high correlation between BW and ovulation rate, that correlation apparently declines during selection and therefore does not restrict a relatively independent development of both traits. The importance of these findings for overall reproductive fitness and its change during selection is discussed.

Validation of live animal ultrasonic measurements of body composition in market lambs

Market lambs from the state fair of Virginia (n = 172) were ultrasonically evaluated by 4 scan technicians and 3 image interpreters to determine accuracy of ultrasonic estimates of loin muscle area (ULMA), backfat thickness (UBF), and body wall thickness (UBW). Lambs were initially scanned at the preferred magnification setting of each technician; 2 chose 1.5x and 2 chose 2.0x. Lambs were then scanned a second time for ULMA and UBF with machine magnification settings changed from 1.5 to 2.0x, or vice versa, midway through the second scan. Lambs were then slaughtered, and analogous measurements [carcass loin muscle area, carcass backfat thickness, and carcass body wall thickness (CBW)] were recorded on chilled carcasses. Pooled, residual correlation coefficients within technicians and interpreters between ultrasonic measurements from the first scan and carcass measurements were 0.66 for loin muscle area, 0.78 for backfat thickness, and 0.73 for body wall thickness, but were reduced to 0.43, 0.69, and 0.50, respectively, by inclusion of linear effects of carcass weight in the model. Mean bias for technicians and interpreters ranged from -1.30 to -2.66 cm(2) for loin muscle area, -0.12 to -0.17 cm for backfat thickness, and 0.14 to -0.03 cm for body wall thickness; prediction errors ranged from 1.86 to 2.22 cm(2), 0.12 to 0.14 cm, and 0.35 to 0.38 cm, respectively. Pooled correlations between repeated measures were 0.67 for ULMA, 0.79 for UBF, and 0.68 for UBW at the same magnification and 0.73 for ULMA and 0.76 for UBF across different magnification settings. Mean differences between repeated measures were more variable among technicians and interpreters than statistics comparing ultrasound to carcass measures. Standard errors of repeatability ranged from 1.61 to 2.45 cm(2) for ULMA, 0.07 to 0.11 cm for UBF, and 0.36 to 0.42 cm for UBW. The effect of changing magnification setting on technician and interpreter repeatability was small for UBF and ULMA. The accuracy of prediction of CBW from UBW was similar to that achieved for backfat thickness; further assessment of the value of ultrasonic measurements of body wall thickness in lambs is warranted. These results indicate that ultrasound scanning can reliably predict carcass loin muscle area and backfat thickness in live lambs and, accordingly, has value in selection programs to improve composition. Development of certification standards for US lamb ultrasound technicians based on results of this study and others is proposed.

Genetic relationships between visual and objective measures of carcass composition in crossbred lambs

The aim of this study was toestimate genetic and phenotypic (coroariances between objective measures and carcass visual scores, as a test of the potential value afvisual scores in selection programmes to improve carcass composition in crossbred lambs. In each of 1986, 1987 and 1988, 22 Suffolk rams were chosen with either high or low scores on an indexdesigned to increase leangrowth rate. These rams were joined with 18 to20 crossbred ewes each and theirlambs were grov.J11 on grass to one of three target live weights (35·5, 41·5 and47·0 kg) for slaughter. The carcasses of 1881 lambs were visuallyscoredfor overall conformation andfatness using thestandard Meat and Livestock Commission methods. Additionally, a more detailed 1S-point scale assessment of conformation and a direct visual score of subcutaneous fat on the carcass were taken on 1252 lambs during the latter 2 years ofihe study. Carcass composition wasestimated by dissection ofa shoulder joint into lean, fat andbone. The possibility of combining data collected on lambs slaughtered at each a/the three target live weights, for the estimation, ofgenetic parameters wasinvestigated. Resultsindicatedtnmneruubilituestimates for a trait usingdata collected within each of the slaughter groups were homogeneous. Genetic correlations between records collected for a trait within each of the slaughter groups were not Significantly different from one. These results indicated that data collected at each of the target slaughter weights could justifiablybe combined. Heritability estimates were generally higher for shoulder tissue proportions (0,3) than for visual scores (0.2). Genetic correlations between all conformation scores and tissueproportions were not significantly different from 0 and therefore of little or no value inpredicting carcass composition. Genetic correlations between visualscores offat and both tissue proportions and ratios were generally high (around 0,65). These results suggest thaifat scores collected on crossbred animals could be valuable in purebred selection programmes where improving carcaes composition a/the crossbred generation is the underlying objective.

Effects of silymarin on gossypol toxicosis in divergent lines of chickens

Gossypol, a pigment of cotton, is a hepatic toxin for chickens. Thus, despite its high protein content, inclusion of cottonseed meal in poultry diets is problematic. Silymarin, an extract from milk thistle, has hepatoprotective qualities and could potentially serve as a feed additive to offset the toxicity of gossypol. The objective of this study was to determine if silymarin could counteract gossypol toxicosis. Cockerels (n = 144) from lines divergently selected for humoral immunity were used. Three individuals from each line were randomly assigned to a cage and fed a corn-soybean meal (control) diet for 14 d. Six cages per line were then randomly assigned 1 of 4 dietary treatments (1,000 mg/kg of gossypol, 1,000 mg/kg of silymarin, 1,000 mg/kg of both gossypol and silymarin, or a control diet). Body weight and feed intake data were collected for 21 d, with chickens bled weekly to collect plasma and determine hematocrits. Chickens were then killed, and livers were collected for subsequent histology and enzymatic activity analyses. Endpoints measured weekly were analyzed with repeated measures and regression methodologies. Plasma and liver enzyme activities, and histological measures, were analyzed using ANOVA. No significant interactions between diets and lines were observed. Chickens assigned to the gossypol and gossypol-silymarin diets stopped gaining weight at d 14 (P < 0.001) and lost weight by d 21 (P < 0.001). Gamma glutamyltransferase was also elevated in these chickens at d 14; activities increased further by d 21 (P < 0.001). Histological examination of liver slices indicated substantial lipidosis (P < 0.001). Furthermore, quinone reductase activity was higher in gossypol- and gossypol-silymarin-treated chickens than in control and silymarin-treated chickens (P < 0.001). Silymarin did not alleviate any clinical effects of gossypol toxicosis.