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Dive into the research topics where A. P. Foote is active.

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Featured researches published by A. P. Foote.


Journal of Animal Science | 2015

Effects of dietary glycerin inclusion at 0, 5, 10, and 15 percent of dry matter on energy metabolism and nutrient balance in finishing beef steers.

K. E. Hales; A. P. Foote; Tami M. Brown-Brandl; H. C. Freetly

Expansion of the biodiesel industry has increased the glycerin (GLY) supply. Glycerin is an energy-dense feed that can be used in ruminant species; however, the energy value of GLY is not known. Therefore, the effects of GLY inclusion at 0, 5, 10, and 15% on energy balance in finishing cattle diets were evaluated in 8 steers (BW = 503 kg) using a replicated Latin square design. Data were analyzed with the fixed effects of dietary treatment and period, and the random effects of square and steer within square were included in the model. Contrast statements were used to separate linear and quadratic effects of GLY inclusion. Glycerin replaced dry-rolled corn (DRC) at 0, 5, 10, and 15% of dietary DM. Dry matter intake decreased linearly (P = 0.02) as GLY increased in the diet. As a proportion of GE intake, fecal energy loss tended to decrease linearly (P < 0.07), and DE also tended to increase linearly (P = 0.07) as dietary level of GLY increased. Urinary energy loss was not different (P > 0.31) as a proportion of GE as GLY increased in the diet. Methane energy loss as a proportion of GE intake tended to respond quadratically (P = 0.10), decreasing from 0 to 10% GLY inclusion and increasing thereafter. As a proportion of GE intake, ME tended to respond quadratically (P = 0.10), increasing from 0 to 10% GLY and then decreasing. As a proportion of GE intake, heat production increased linearly (P = 0.02) as GLY increased in the diet. Additionally, as a proportion of GE intake, retained energy (RE) tended to respond quadratically (P = 0.07), increasing from 0 to 10% GLY inclusion and decreasing thereafter. As a proportion of N intake, urinary and fecal N excretion increased linearly (P < 0.04) as GLY increased in the diet. Furthermore, grams of N retained and N retained as a percent of N intake both decreased linearly (P < 0.02) as GLY increased in the diet. Total DM digestibility tended (P < 0.10) to respond quadratically, increasing at a decreasing rate from 0 to 5% GLY inclusion. Overall, RE tended to decrease as GLY increased in the diet in conjunction with a decrease in N retention, which could indicate an increased metabolic cost to the animal associated with feeding GLY. Based on RE, the feeding value of GLY in high-concentrate diets is greater than DRC at 5 and 10% of DM but less at 15% of DM.


Gene | 2016

Transcriptome differences in the rumen of beef steers with variation in feed intake and gain

Rebecca J. Kern; A. K. Lindholm-Perry; H. C. Freetly; W. M. Snelling; John W. Kern; J. W. Keele; J. R. Miles; A. P. Foote; W. T. Oliver; L. A. Kuehn; Paul A. Ludden

BACKGROUND Feed intake and gain are economically important traits in beef production. The rumen wall interacts with feed, microbial populations, and fermentation products important to cattle nutrition. As such, it is likely to be a critical component in the beef steers ability to utilize feedstuffs efficiently. To identify genes associated with steer feed intake and body weight gain traits, and to gain an understanding of molecules and pathways involved in feed intake and utilization, RNA sequencing (RNA-Seq) was performed on rumen papillae from 16 steers with variation in gain and feed intake. Four steers were chosen from each of the four Cartesian quadrants for gain×feed intake and used to generate individual RNA-Seq libraries. RESULTS Normalized read counts from all of the mapped reads from each of the four groups of animals were individually compared to the other three groups. In addition, differentially expressed genes (DEGs) between animals with high and low gain, as well as high and low intake were also evaluated. A total of 931 genes were differentially expressed in the analyses of the individual groups. Eighty-nine genes were differentially expressed between high and low gain animals; and sixty-nine were differentially expressed in high versus low intake animals. Several of the genes identified in this study have been previously associated with feed efficiency. Among those are KLK10, IRX3, COL1A1, CRELD2, HDAC10, IFITM3, and VIM. CONCLUSIONS Many of the genes identified in this study are involved with immune function, inflammation, apoptosis, cell growth/proliferation, nutrient transport, and metabolic pathways and may be important predictors of feed intake and gain in beef cattle.


Domestic Animal Endocrinology | 2016

Leptin concentrations in finishing beef steers and heifers and their association with dry matter intake, average daily gain, feed efficiency, and body composition.

A. P. Foote; R. G. Tait; D. H. Keisler; K. E. Hales; H. C. Freetly

The objective of this experiment was to determine the association of circulating plasma leptin concentrations with production and body composition measures of finishing beef steers and heifers and to determine if multiple sampling time points improve the associations of plasma leptin concentrations with production and body composition traits. Individual dry matter intake (DMI) and ADG were determined for 84 d using steers and heifers (n = 127 steers and n = 109 heifers). Blood was collected on day 0, day 42, and day 83 for determination of plasma leptin concentrations. Leptin concentrations were greater in heifers than those in steers on day 0 (P < 0.001 for sex by day interaction), and leptin concentrations increased in both sexes but were not different from each other on day 83. Leptin concentrations at all 3 time points and the mean were shown to be positively associated with DMI (P ≤ 0.006), whereas the mean leptin concentration explaining 8.3% of the variance of DMI. Concentrations of leptin at day 42, day 83, and the mean of all 3 time points were positively associated with ADG (P ≤ 0.011). Mean leptin concentration was negatively associated with gain:feed ratio and positively associated with residual feed intake (RFI), indicating that more efficient cattle had lower leptin concentrations. However, leptin concentrations explained very little of the variation in residual feed intake (≤ 3.2% of the variance). Leptin concentrations were positively associated with body fat measured by ultrasonography at the 12th rib and over the rump (P < 0.001), with the mean leptin concentration explaining 21.9% and 12.7% of the variance in 12th rib and rump fat thickness, respectively. The same trend was observed with carcass composition where leptin concentrations were positively associated with 12th rib fat thickness, USDA-calculated yield grade (YG), and marbling score (P ≤ 0.006) and mean leptin concentration explained 16.8, 18.2, and 4.6% of the variance for 12th rib fat thickness, yield grade, and marbling score, respectively. Given these and previous results, it appears that leptin physiology could be a candidate for mechanisms that contribute to feed intake and feed efficiency variation in beef cattle.


Scientific Reports | 2017

Rumen Fluid Metabolomics Analysis Associated with Feed Efficiency on Crossbred Steers

V. M. Artegoitia; A. P. Foote; R. M. Lewis; H. C. Freetly

The rumen has a central role in the efficiency of digestion in ruminants. To identify potential differences in rumen function that lead to differences in average daily gain (ADG), rumen fluid metabolomic analysis by LC-MS and multivariate/univariate statistical analysis were used to identify differences in rumen metabolites. Individual feed intake and body-weight was measured on 144 steers during 105 d on a high concentrate ration. Eight steers with the greatest ADG and 8 steers with the least-ADG with dry matter intake near the population average were selected. Blood and rumen fluid was collected from the 16 steers 26 d before slaughter and at slaughter, respectively. As a result of the metabolomics analysis of rumen fluid, 33 metabolites differed between the ADG groups based on t-test, fold changes and partial least square discriminant analysis. These metabolites were primarily involved in linoleic and alpha-linolenic metabolism (impact-value 1.0 and 0.75, respectively; P < 0.05); both pathways were down-regulated in the greatest-ADG compared with least-ADG group. Ruminal biohydrogenation might be associated with the overall animal production. The fatty acids were quantified in rumen and plasma using targeted MS to validate and evaluate the simple combination of metabolites that effectively predict ADG.


Journal of Animal Science | 2016

Relationship of glucocorticoids and hematological measures with feed intake, growth, and efficiency of finishing beef cattle.

A. P. Foote; K. E. Hales; R. G. Tait; Elaine D. Berry; Clay A. Lents; J. E. Wells; A. K. Lindholm-Perry; H. C. Freetly

The objective of this experiment was to determine the association of glucocorticoids and markers for immune status in finishing beef steers and heifers with DMI, growth, and efficiency. Steers ( = 127) and heifers ( = 109) were individually fed a finishing ration for 84 d with BW measured every 21 d. Blood samples were collected via jugular venipuncture for metabolite (glucose and lactate) and cortisol analysis and rectal grab samples of feces were collected for corticosterone analysis on d 83 of the experiment. Plasma cortisol was not correlated to DMI ( = -0.08, > 0.05) or fractional DMI (g DMI/kg BW; = -0.03, > 0.05) but was negatively correlated with ADG ( = -0.17, < 0.01) and G:F ( = -0.20, < 0.01) and positively correlated to residual feed intake (RFI; = 0.14, < 0.05). Fecal corticosterone was positively correlated to fractional DMI ( = 0.15, < 0.05) and RFI ( = 0.23, < 0.01) and negatively correlated to G:F ( = -0.18, < 0.01). Using a mixed model analysis, none of the metabolites or hormones were associated with DMI ( > 0.05) but fecal corticosterone was positively associated with fractional DMI only in heifers ( = 0.04). Plasma lactate ( < 0.01) was and plasma cortisol ( < 0.10) tended to be negatively associated with ADG. Plasma cortisol ( < 0.05) and fecal corticosterone tended ( < 0.10) to be negatively associated with G:F. Fecal corticosterone was positively associated with RFI in heifers ( < 0.04). In a mixed model analysis, total leukocyte count was positively associated with ADG ( < 0.04) and tended to be positively associated with G:F ( < 0.06). Among leukocyte subtypes, neutrophil count was positively associated with ADG in steers ( < 0.02) and monocytes were positively associated with ADG in heifers ( < 0.03). Lymphocyte counts (LY) in steers were negatively associated with DMI ( = 0.03) and fractional DMI ( < 0.03). In heifers, LY tended to be positively associated with DMI ( < 0.09) and fractional DMI ( < 0.06). Lymphocyte count was also positively associated with ADG ( < 0.01) and G:F ( = 0.05) in heifers. The association of production traits with immune status seems to be different between steers and heifers. There was a stronger relationship of cortisol than fecal corticosterone to feed efficiency measures, suggesting that cortisol concentrations could be a better marker for feed efficiency traits than fecal corticosterone concentrations.


Journal of Animal Science | 2017

The effects of feeding increasing concentrations of corn oil on energy metabolism and nutrient balance in finishing beef steers

K. E. Hales; A. P. Foote; Tami M. Brown-Brandl; H. C. Freetly

The use of an added lipid is common in high-concentrate finishing diets. The objective of our experiment was to determine if feeding increasing concentrations of added dietary corn oil would decrease enteric methane production, increase the ME:DE ratio, and improve recovered energy (RE) in finishing beef steers. Four treatments were used in a replicated 4 × 4 Latin square ( = 8; initial BW = 397 kg ± 3.8). Data were analyzed using a Mixed model with the fixed effects of period and dietary treatment and random effects of square and steer within square. Treatments consisted of: (1) 0% added corn oil (Fat-0); (2) 2% added corn oil (Fat-2); (3) 4% added corn oil (Fat-4); (4) 6% added corn oil (Fat-6). Dry matter intake or GE intake did not differ across diets ( ≥ 0.39). As a proportion of GE intake, fecal energy loss, DE, and urinary energy loss did not differ by treatment ( ≥ 0.27). Additionally, methane energy produced decreased linearly as corn oil increased in the diet ( < 0.01). No differences were detected in ME loss as a proportion of GE intake ( ≥ 0.98). However, the ME:DE ratio increased linearly ( < 0.01; 93.06, 94.10, 94.64, and 95.20 for Fat-0, Fat-2, Fat-4, and Fat-6, respectively) as corn oil inclusion increased in the diet. No differences in RE or heat production as a proportion of GE intake were noted ( ≥ 0.59) and dry matter digestibility did not differ across diets ( ≥ 0.36). Digestibility of NDF as a proportion of intake responded quadratically increasing from 0% corn to 4% corn oil and decreasing thereafter ( = 0.02). Furthermore, ether extract digestibility as a proportion of intake responded quadratically, increasing from 0% to 4% corn oil inclusion before reaching a plateau ( < 0.01). As a proportion of GE intake, RE as protein decreased linearly as corn oil was increased in the diet ( < 0.01). As a proportion of total energy retained, RE as protein decreased when corn oil increased from 0% to 6% of diet DM ( < 0.01). Similarly, RE as fat and carbohydrate as a proportion of GE intake increased linearly as corn oil increased in the diet ( = 0.05). From these data, we interpret that adding dietary fat decreases enteric methane production and increases the ME:DE ratio, in addition to increasing the amount of energy retained as fat and carbohydrate.


Journal of Animal Science | 2016

Effect of abomasal butyrate infusion on net nutrient flux across the portal-drained viscera and liver of growing lambs

A. P. Foote; H. C. Freetly

The purpose of this experiment was to determine if supplying butyrate to the postruminal gastrointestinal tract of growing lambs alters blood flow and nutrient flux across the portal-drained viscera (PDV) and hepatic tissues. Polled Dorset wether lambs ( = 10; initial BW = 55 ± 3.3 kg) had catheters surgically implanted into the portal vein, a branch of the hepatic vein, a mesenteric vein, and the abdominal aorta. A cannula was placed in the abomasum to deliver the treatment. Lambs were fed a pelleted ration once daily consisting of 69.7% dehydrated alfalfa, 30.0% ground corn, and 0.3% salt at 1.3 × NE requirement. The experimental design was a crossover balanced in time, so that each lamb received both treatments. Treatments consisted of either a pulse dose infusion of butyrate (buffered solution) to supply butyrate (10 mg/kg BW) or a buffered saline solution (1 mL/kg BW) once daily at the time of feeding. On d 14 of the treatment period, nutrient fluxes were measured using para-aminohippuric acid as a blood flow marker. Blood samples were collected from the aorta, portal vein, and hepatic vein every hour for 9 h beginning at 30 min prior to treatment/feeding. There was a tendency for a treatment × time interaction ( = 0.05) for portal vein blood flow, indicating that blood flow began to decrease earlier postprandial in lambs receiving butyrate. The butyrate treatment tended to increase the uptake of O ( = 0.07) and increased the uptake of glucose ( = 0.002), glutamate ( = 0.04), and glutamine ( = 0.02) by the PDV. There was a treatment × time interaction ( < 0.01) for flux of acetate, propionate, butyrate, isobutyrate, and valerate across the PDV. The interaction was mainly due to an earlier postprandial peak and associated decrease in the flux rate of the VFA. The alteration in timing of the postprandial peak of VFA flux was also observed in hepatic fluxes of VFA. It appears that supplying butyrate to the postruminal tissues through an abomasal cannula increases glucose, glutamate, and glutamine metabolism by the PDV.


Journal of Animal Science | 2015

Relationship of leptin concentrations with feed intake, growth, and efficiency in finishing beef steers

A. P. Foote; K. E. Hales; L. A. Kuehn; D. H. Keisler; D. A. King; S. D. Shackelford; T. L. Wheeler; H. C. Freetly

The objective of this experiment was to determine the association of serum leptin concentrations with production measures including DMI, ADG, and G:F as well as carcass characteristics in genetically diverse finishing beef steers. Three cohorts of steers ( = 473 total) were individually fed a finishing ration for 92, 64, and 84 d for cohort 1, 2, and 3, respectively. Serum was collected on d 42, 22, and 19 of the experiment for cohort 1, 2, and 3, respectively. Leptin concentrations were positively correlated to DMI ( = 0.21, < 0.01) but negatively correlated to grams DMI per kilogram initial BW ( = -0.21, < 0.01). Leptin concentrations were also negatively correlated to ADG and G:F ( < 0.01). Leptin concentrations were positively correlated to 12th-rib fat thickness, yield grade, and marbling score ( < 0.01) and negatively correlated to LM area ( < 0.01). Using a mixed model analysis (SAS 9.3; SAS Inst. Inc., Cary, NC) to account for breed effects, leptin concentrations were positively associated with DMI ( = 0.01) and accounted for 1.10% of the variance. However, if initial BW and yield grade were included as covariates to account for body size and fatness, leptin was negatively associated with DMI ( = 0.02) and accounted for 0.54% of the variance. Regardless of covariates included in the model, leptin was negatively associated with ADG ( < 0.01) and G:F ( < 0.01) and accounted for 2.62 and 7.87% of the variance for ADG and G:F, respectively. Leptin concentrations were also positively associated with 12th-rib fat thickness, yield grade, and marbling score ( < 0.01) and accounted for 14.74, 12.74, and 6.99% of the variance for 12th-rib fat, yield grade, and marbling score, respectively. Leptin concentrations could be a useful physiological marker for growth and feed efficiency of finishing beef cattle. Genetic influences on the biology of leptin also need to be considered when using leptin as physiological marker for production measures.


Journal of Animal Science | 2016

The effects of zilpaterol hydrochloride and shade on blood metabolites of finishing beef steers

K. E. Hales; A. P. Foote; S. A. Jones; S. D. Shackelford; B M Boyd; Galen E. Erickson

The effects of feeding zilpaterol hydrochloride (ZH) and shade were evaluated on blood metabolites in finishing beef steers ( = 480). Cattle were fed 0 or 8.33 mg/kg of diet DM ZH for 21 d with a 3- or 4-d withdrawal before harvest and were housed in open or shaded pens. Blood samples were collected the day before ZH was fed and on the day the cattle were shipped to the commercial abattoir. Lactate concentration was not different between cattle fed ZH in open or shaded pens ( = 0.12). Nonetheless, a tendency for a diet × time interaction was detected for lactate concentration ( = 0.09), in which it was greater in cattle fed the control diet in open pens before being fed ZH. Cortisol concentration was less before and after ZH was fed ( = 0.01). Glucose was greater for cattle fed the control diet than cattle fed ZH for 21 d ( = 0.03). Cattle fed in open vs. shaded pens did not differ in glucose concentration ( = 0.12), whereas glucose concentrations were greater before ZH was fed than after ( = 0.02). In contrast, plasma urea nitrogen (PUN) concentration was not different in response to diet ( = 0.24), housing type ( = 0.65), or before vs. after being fed ZH ( = 0.60). Lactate concentrations were not different across diet or shade treatments before ZH was fed, whereas after ZH, lactate concentrations were greater in control cattle than cattle fed ZH. Additionally, cortisol was less after feeding ZH. Glucose was greater before than after feeding ZH.


Journal of Animal Science | 2016

Endocannabinoids concentrations in plasma associated with feed efficiency and carcass composition of beef steers

V. M. Artegoitia; A. P. Foote; R. M. Lewis; D. A. King; S. D. Shackelford; T. L. Wheeler; H. C. Freetly

Endocannabinoids, including anandamide (AEA) and 2-arachidonoylglycerol (2-AG), are a class of endogenous lipid mediators that activate cannabinoids receptors and may be involved in the control of feed intake and energy metabolism. The objective of this study was to quantify AEA and 2-AG in plasma and identify possible associations with production traits and carcass composition in finishing beef steers. Individual DMI and BW gain were measured on 140 Angus-sired steers for 105 d on a finishing ration. Blood samples were collected on d 84 of the experiment, which was 40 d before slaughter. Variables were analyzed using Pearson CORR procedure of SAS. Mean endocannabinoid concentrations in plasma were 4.48 ± 1.82 ng/mL and 0.44 ± 0.24 ng/mL for AEA and 2-AG, respectively. The AEA concentration was positively correlated with G:F ratio ( = 0.20; = 0.02), indicating that more efficient animals had greater AEA plasma concentrations. In addition, AEA concentration tended to be negatively correlated with the 12th rib fat thickness ( = -0.17; = 0.07); but no correlation was found with USDA-calculated yield grade ( = -0.14; = 0.11), or marbling score ( = 0.05; = 0.54). The concentration of 2-AG was positively correlated with AEA ( = 0.21; = 0.01); however, 2-AG concentration was not correlated with parameters of feed efficiency or carcass composition. To our knowledge, this study is the first to report plasma concentration of endocannabinoids in steers. These results provide evidence that plasma concentration of a key endocannabinoid, AEA, was favorably correlated with feed efficiency and fat thickness in finishing steers.

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H. C. Freetly

Agricultural Research Service

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A. K. Lindholm-Perry

Agricultural Research Service

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K. E. Hales

Agricultural Research Service

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V. M. Artegoitia

University of Nebraska–Lincoln

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R. M. Lewis

University of Nebraska–Lincoln

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L. A. Kuehn

Agricultural Research Service

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W. T. Oliver

Agricultural Research Service

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R. G. Tait

Agricultural Research Service

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S. D. Shackelford

Agricultural Research Service

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T. L. Wheeler

Agricultural Research Service

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