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Dive into the research topics where Radka Roubalová is active.

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Featured researches published by Radka Roubalová.


Developmental and Comparative Immunology | 2013

Molecular cloning and expression of TLR in the Eisenia andrei earthworm.

František Škanta; Radka Roubalová; Jiří Dvořák; Petra Procházková; Martin Bilej

Toll-like receptors (TLRs) play an important role in defense responses to pathogens in invertebrates. Here we characterize the first TLR isolated from an oligochaete annelid, namely, Eisenia andrei (EaTLR) and show its expression pattern. The full-length EaTLR cDNA consists of 2615 bp encoding a putative protein of 675 amino acids. The predicted amino acid sequence comprises of an extracellular domain containing 31 amino acid signal peptide and seven leucine-rich repeats (LRR), capped with cysteine-rich N- and C-terminal LRRs followed by a transmembrane domain and cytoplasmic Toll/IL-1R domain (TIR). TIR domains of twenty individual earthworms were sequenced and the variability suggesting the presence of a high number of TLR genes in the genome of E. andrei was observed. Phylogenetic analysis revealed the highest similarity of EaTLR with polychaete annelid, Capitella teleta and TLRs of mollusks and echinoderms. Finally, the highest constitutive expression of EaTLR was observed in the digestive tract. Gene expression was significantly increased in coelomocytes of E. andrei after the challenge with Gram-positive bacteria.


PLOS ONE | 2013

Microbial environment affects innate immunity in two closely related earthworm species Eisenia andrei and Eisenia fetida.

Jiří Dvořák; Veronika Mančíková; Václav Pižl; Dana Elhottová; Marcela Šilerová; Radka Roubalová; František Škanta; Petra Procházková; Martin Bilej

Survival of earthworms in the environment depends on their ability to recognize and eliminate potential pathogens. This work is aimed to compare the innate defense mechanisms of two closely related earthworm species, Eisenia andrei and Eisenia fetida, that inhabit substantially different ecological niches. While E. andrei lives in a compost and manure, E. fetida can be found in the litter layer in forests. Therefore, the influence of environment-specific microbiota on the immune response of both species was followed. Firstly, a reliable method to discern between E. andrei and E. fetida based on species-specific primers for cytochrome c oxidase I (COI) and stringent PCR conditions was developed. Secondly, to analyze the immunological profile in both earthworm species, the activity and expression of lysozyme, pattern recognition protein CCF, and antimicrobial proteins with hemolytic function, fetidin and lysenins, have been assessed. Whereas, CCF and lysozyme showed only slight differences in the expression and activity, fetidin/lysenins expression as well as the hemolytic activity was considerably higher in E. andrei as compared to E. fetida. The expression of fetidin/lysenins in E. fetida was not affected upon the challenge with compost microbiota, suggesting more substantial changes in the regulation of the gene expression. Genomic DNA analyses revealed significantly higher level of fetidin/lysenins (determined using universal primer pairs) in E. andrei compared to E. fetida. It can be hypothesized that E. andrei colonizing compost as a new habitat acquired an evolutionary selection advantage resulting in a higher expression of antimicrobial proteins.


Environmental Pollution | 2014

The effect of dibenzo-p-dioxin- and dibenzofuran-contaminated soil on the earthworm Eisenia andrei

Radka Roubalová; Jiří Dvořák; Petra Procházková; Dana Elhottová; Pavel Rossmann; František Škanta; Martin Bilej

Polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs) belong to the group of persistent organic pollutants, highly toxic environmental pollutants that include hydrophobic compounds with the tendency to bioaccumulate. Earthworms (Eisenia andrei) were exposed to PCDD/Fs-contaminated soil, and changes in their lipophilic structures and the gene expression of their defense molecules were followed. Damage to the intestinal wall and adjacent chloragogenous tissue was observed. Further, the up-regulation of the expression of several genes was detected. On the basis of these results, the mechanism of the impact of PCDD/Fs on earthworms has been proposed. Dioxins that accumulate in the lipophilic structures cause an increase in reactive oxidative species that triggers oxidative stress followed by the gene expression of two molecules that play a role in protection against oxidant toxicity, calreticulin (CRT) and Hsp70. Moreover, the effect of microbial biomass on the expression of coelomic cytolytic factor (CCF), a pattern recognition receptor, was also observed.


Developmental and Comparative Immunology | 2016

Sensing microorganisms in the gut triggers the immune response in Eisenia andrei earthworms

Jiří Dvořák; Radka Roubalová; Petra Procházková; Pavel Rossmann; František Škanta; Martin Bilej

The tube-within-tube body plan of earthworms is appropriate for studying the interactions of microorganisms with the immune system of body cavities such as the digestive tract and coelom. This study aims to describe the immune response on the molecular and cellular level in the coelomic cavity and the gut of the earthworm Eisenia andrei after experimental microbial challenge by administering two bacterial strains (Escherichia coli and Bacillus subtilis) or yeast Saccharomyces cerevisiae to the environment. The changes in mRNA levels of defense molecules (pattern recognition receptor CCF, lysozyme, fetidin/lysenins) in the coelomocytes and gut tissue were determined by quantitative PCR. The immune response at a cellular level was captured in histological sections, and the expression of CCF was localized using in situ hybridization. Coelomocytes respond to the presence of bacteria in the coelomic cavity by increasing the mRNA levels of defense molecules, especially CCF. The immune response in gut tissue is less affected by microbial stimulation because the epithelial cells of gut exhibit basically strong mRNA synthesis of ccf as a defense against the continuous microbial load in the gut lumen. The cellular immune response is mediated by coelomocytes released from the mesenchymal lining of the coelomic cavity. These combined immune mechanisms are necessary for the survival of earthworms in the microbially rich environment of soil.


Journal of Invertebrate Pathology | 2013

Correlation between the activity of digestive enzymes and nonself recognition in the gut of Eisenia andrei earthworms

Petra Procházková; Vladimír Šustr; Jiří Dvořák; Radka Roubalová; František Škanta; Václav Pižl; Martin Bilej

Earthworms Eisenia andrei, similarly to other invertebrates, rely on innate defense mechanisms based on the capability to recognize and respond to nonself. Here, we show a correlation between the expression of CCF, a crucial pattern-recognition receptor, and lysozyme, with enzyme activities in the gut of E. andrei earthworms following a microbial challenge. These data suggest that enzyme activities important for the release and recognition of molecular patterns by pattern-recognition molecules, as well as enzymes involved in effector pathways, are modulated during the microbial challenge. In particular, protease, laminarinase, and glucosaminidase activities were increased in parallel to up-regulated CCF and lysozyme expression.


Archive | 2018

Annelida: Environmental Interactions and Ecotoxicity in Relation to the Earthworm Immune System

Radka Roubalová; Barbara Plytycz; Petra Procházková; Natividad Isabel Navarro Pacheco; Martin Bilej

Earthworms live in microbial-rich habitats populated with various bacteria, fungi, protozoa, and other organisms. Thus, soil represents an environment with high antigenic pressure, and earthworms have developed potent defense mechanisms. Besides the abundant microbiota, earthworms are also highly influenced by various types of organic and inorganic pollutants and by the nanoparticles that reach the soil system. These contaminants affect earthworm physiology and their ability to reproduce, grow, and survive. As a result, earthworms are well suited for the monitoring soil contamination.


Archive | 2018

Annelida: Recognition of Nonself in Earthworms

Martin Bilej; Petra Procházková; Radka Roubalová; František Škanta; Jiří Dvořák

Earthworms belonging to oligochaete annelids became an important model for comparative immunologists in the early 1960s with the publication of transplantation experimental results reporting that autologous transplants of earthworm body wall pieces were accepted, but xenograft or even allografts were not. These transplantation experiments proved the existence of self or nonself recognition in earthworms, paving the way for extensive studies on the earthworm immune mechanisms that evolved to prevent the invasion of pathogens. In 1989 Charles Janeway, Jr., published a general concept based on the existence of pattern recognition receptors (PRRs) on the immune cells that recognize and bind conserved molecular structures of microorganisms known as pathogen-associated molecular patterns and thus trigger the immune response to potential pathogens. In the present review, the structure, specificity, and expression profile of PRRs characterized in earthworms are discussed and their role in innate defense suggested.


Ecotoxicology and Environmental Safety | 2018

The role of CuZn- and Mn-superoxide dismutases in earthworm Eisenia andrei kept in two distinct field-contaminated soils

Radka Roubalová; Jiří Dvořák; Petra Procházková; František Škanta; Natividad Isabel Navarro Pacheco; Jaroslav Semerád; Tomáš Cajthaml; Martin Bilej

Polychlorinated dibenzo-p-dioxins/dibenzofurans (PCDD/Fs), together with polycyclic aromatic hydrocarbons (PAHs), represent highly toxic and persistent organic environmental pollutants, especially due to their capability for bioaccumulation in fatty tissues. To observe the environmentally relevant effect of these compounds on earthworms, two soils naturally contaminated with PCDD/Fs and PAHs were used in our experiments. We focused on the role of CuZn- and Mn-superoxide dismutases. We assembled a full-length sequences of these molecules from Eisenia andrei earthworm and confirmed their activity. We demonstrated the significant reduction of CuZn-SOD on both mRNA and enzyme activity levels and increased levels of reactive oxygen species in earthworms kept in PCDD/F-polluted soil, which corresponds to the observed histopathologies of the earthworm intestinal wall and adjacent chloragogenous tissue. The results show an important role of CuZn-SOD in earthworm tissue damage caused by PCDD/Fs present in soil. We did not detect any significant changes in the mRNA expression or activity of Mn-SOD in these earthworms. In earthworms maintained in PAH-polluted soil the activity of both CuZn-SOD and Mn-SOD significantly increased. No histopathological changes were detected in these worms, however significant decrease of coelomocyte viability was observed. This reduced viability was most likely independent of oxidative stress.


PLOS ONE | 2014

Involvement of the iron regulatory protein from Eisenia andrei earthworms in the regulation of cellular iron homeostasis.

Petra Procházková; František Škanta; Radka Roubalová; Marcela Šilerová; Jiří Dvořák; Martin Bilej

Iron homeostasis in cells is regulated by iron regulatory proteins (IRPs) that exist in different organisms. IRPs are cytosolic proteins that bind to iron-responsive elements (IREs) of the 5′- or 3′-untranslated regions (UTR) of mRNAs that encode many proteins involved in iron metabolism. In this study, we have cloned and described a new regulatory protein belonging to the family of IRPs from the earthworm Eisenia andrei (EaIRP). The earthworm IRE site in 5′-UTR of ferritin mRNA most likely folds into a secondary structure that differs from the conventional IRE structures of ferritin due to the absence of a typically unpaired cytosine that participates in protein binding. Prepared recombinant EaIRP and proteins from mammalian liver extracts are able to bind both mammalian and Eisenia IRE structures of ferritin mRNA, although the affinity of the rEaIRP/Eisenia IRE structure is rather low. This result suggests the possible contribution of a conventional IRE structure. When IRP is supplemented with a Fe-S cluster, it can function as a cytosolic aconitase. Cellular cytosolic and mitochondrial fractions, as well as recombinant EaIRP, exhibit aconitase activity that can be abolished by the action of oxygen radicals. The highest expression of EaIRP was detected in parts of the digestive tract. We can assume that earthworms may possess an IRE/IRP regulatory network as a potential mechanism for maintaining cellular iron homeostasis, although the aconitase function of EaIRP is most likely more relevant.


Developmental and Comparative Immunology | 2016

LBP/BPI homologue in Eisenia andrei earthworms

František Škanta; Petra Procházková; Radka Roubalová; Jiří Dvořák; Martin Bilej

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Martin Bilej

Academy of Sciences of the Czech Republic

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Petra Procházková

Academy of Sciences of the Czech Republic

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František Škanta

Academy of Sciences of the Czech Republic

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Jiří Dvořák

Academy of Sciences of the Czech Republic

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Marcela Šilerová

Academy of Sciences of the Czech Republic

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Dana Elhottová

Academy of Sciences of the Czech Republic

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Vladimír Šustr

Academy of Sciences of the Czech Republic

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Václav Pižl

Academy of Sciences of the Czech Republic

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Ales Hanc

Czech University of Life Sciences Prague

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Jaroslav Semerád

Charles University in Prague

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