Rees B. Rankin

First-principles studies of chiral step reconstructions of Cu(100) by adsorbed glycine and alanine

Adsorption of amino acids on Cu(100) is known experimentally to induce surface reconstructions featuring intrinsically chiral Cu(3,1,17) facets, but no information about the geometry of the molecules on these chiral facets is available. We present density-functional theory calculations for the structure of glycine and alanine at moderate coverages on Cu(3,1,17). As might be expected, molecules prefer to bind at the step edges on this surface rather than on the surfaces (100)-oriented terraces. The adsorption of enantiopure alanine on Cu(3,1,17) is predicted to be weakly enantiospecific, with S-alanine being more stable on Cu(3,1,17)(S) than R-alanine. By comparing the surface energies of Cu(100) and Cu(3,1,17) in the presence of adsorbed glycine or alanine, our calculations provide insight into the driving force for chiral reconstructions of Cu(100) by amino acids.

The importance of charge–quadrupole interactions for H2 adsorption and diffusion in CuBTC

We have assessed the effects of charge–quadrupole interactions (CQIs) between the framework atoms of copper(II) benzene-1,3,5-tricarboxylate (CuBTC) and adsorbed H2 molecules on equilibrium adsorption properties and self- and transport diffusivities. We have also compared charges computed from periodic density functional theory (DFT) on the fully periodic CuBTC structure with charges derived from DFT calculations on cluster models of CuBTC. Our results indicate that carboxylate group atom charges computed from plane wave periodic DFT with the Bader charge analysis formalism are not consistent with the charges computed from the ChelpG method from Gaussian-based DFT cluster calculations. The charges derived from Bader analysis seem to be too large. Adsorption isotherms computed from Monte Carlo simulations and diffusivities computed from molecular dynamics simulations indicate that CQIs have a substantial impact on equilibrium and transport properties of H2 adsorbed in CuBTC at 77 K. Conversely, both adsorption isotherms and diffusivities were shown to be essentially unaffected by CQIs at 298 K.