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Dive into the research topics where Richard Cisek is active.

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Featured researches published by Richard Cisek.


Review of Scientific Instruments | 2009

Invited Review Article: Imaging techniques for harmonic and multiphoton absorption fluorescence microscopy

Ramón Carriles; Dawn Schafer; Kraig E. Sheetz; Jeffrey J. Field; Richard Cisek; Virginijus Barzda; Anne W. Sylvester; Jeff Squier

We review the current state of multiphoton microscopy. In particular, the requirements and limitations associated with high-speed multiphoton imaging are considered. A description of the different scanning technologies such as line scan, multifoci approaches, multidepth microscopy, and novel detection techniques is given. The main nonlinear optical contrast mechanisms employed in microscopy are reviewed, namely, multiphoton excitation fluorescence, second harmonic generation, and third harmonic generation. Techniques for optimizing these nonlinear mechanisms through a careful measurement of the spatial and temporal characteristics of the focal volume are discussed, and a brief summary of photobleaching effects is provided. Finally, we consider three new applications of multiphoton microscopy: nonlinear imaging in microfluidics as applied to chemical analysis and the use of two-photon absorption and self-phase modulation as contrast mechanisms applied to imaging problems in the medical sciences.


Journal of Physical Chemistry B | 2011

Nonlinear Optical Properties of Type I Collagen Fibers Studied by Polarization Dependent Second Harmonic Generation Microscopy

Adam Tuer; Serguei Krouglov; Nicole Prent; Richard Cisek; Daaf Sandkuijl; Kazuhiro Yasufuku; Brian C. Wilson; Virginijus Barzda

Collagen (type I) fibers are readily visualized with second harmonic generation (SHG) microscopy though the molecular origin of the signal has not yet been elucidated. In this study, the molecular origin of SHG from type I collagen is investigated using the time-dependent coupled perturbed Hartree-Fock calculations of the hyperpolarizibilities of glycine, proline, and hydroxyproline. Two effective nonlinear dipoles are found to orient in-the-plane of the amino acids, with one of the dipoles aligning close to the pitch orientation in the triple-helix, which provides the dominant contribution to the SHG polarization properties. The calculated hyperpolarizability tensor element ratios for the collagen triple-helix models: [(Gly3)n]3, [(Gly-Pro2)n]3, and [(Gly-Pro-Hyp)n]3, are used to predict the second-order nonlinear susceptibility ratios, χ(zzz)(2)/χ(iiz)(2) and χ(zii)(2)/χ(iiz)(2) of collagen fibers. From SHG microscopy polarization in, polarization out (PIPO) measurements of type I collagen in human lung tissue, a theoretical method is used to extract the triple-helix orientation angle with respect to the collagen fiber. The study shows the dominant role of amino acid orientation in the triple-helix for determining the polarization properties of SHG and provides a method for determining the triple-helix orientation angle in the collagen fibers.


Applied Optics | 2007

Influence of semicrystalline order on the second-harmonic generation efficiency in the anisotropic bands of myocytes

Catherine Greenhalgh; Nicole Prent; Chantal Green; Richard Cisek; Arkady Major; Bryan A. Stewart; Virginijus Barzda

The influence of semicrystalline order on the second-harmonic generation (SHG) efficiency in the anisotropic bands of Drosophila melanogaster sarcomeres from larval and adult muscle has been investigated. Differences in the semicrystalline order were obtained by using wild-type and mutant strains containing different amounts of headless myosin. The reduction in semicrystalline order without altering the chemical composition of myofibrils was achieved by observing highly stretched sarcomeres and by inducing a loss of viability in myocytes. In all cases the reduction of semicrystalline order in anisotropic bands of myocytes resulted in a substantial decrease in SHG. Second-harmonic imaging during periodic contractions of myocytes revealed higher intensities when sarcomeres were in the relaxed state compared with the contracted state. This study demonstrates that an ordered semicrystalline arrangement of anisotropic bands plays a determining role in the efficiency of SHG in myocytes.


Optics Express | 2006

Femtosecond Yb:KGd(WO 4 ) 2 laser oscillator pumped by a high power fiber-coupled diode laser module

Arkady Major; Richard Cisek; Virginijus Barzda

The development and characterization of a diode-pumped ultrashort pulse Yb:KGd(WO(4))(2) laser oscillator is reported. The laser was pumped by a 25W fiber-coupled diode laser module operating at 980 nm wavelength. In the mode-locked regime, 296 fs duration pulses centered around 1031 nm were generated at a repetition rate of 61 MHz with a total average output power of up to 3.7W, corresponding to 205 kW of peak power and 60 nJ of energy per pulse. Compensation of positive intracavity dispersion was realized using a single chirped dielectric mirror.


Journal of Biomedical Optics | 2010

Nonlinear multicontrast microscopy of hematoxylin-and-eosin-stained histological sections

Adam Tuer; Danielle Tokarz; Nicole Prent; Richard Cisek; Jennifer Alami; Daniel Dumont; Ludmilla Bakueva; J. A. Rowlands; Virginijus Barzda

Imaging hematoxylin-and-eosin-stained cancerous histological sections with multicontrast nonlinear excitation fluorescence, second- and third-harmonic generation (THG) microscopy reveals cellular structures with extremely high image contrast. Absorption and fluorescence spectroscopy together with second hyperpolarizability measurements of the dyes shows that strong THG appears due to neutral hemalum aggregation and is subsequently enhanced by interaction with eosin. Additionally, fluorescence lifetime imaging microscopy reveals eosin fluorescence quenching by hemalums, showing better suitability of only eosin staining for fluorescence microscopy. Multicontrast nonlinear microscopy has the potential to differentiate between cancerous and healthy tissue at a single cell level.


Applied Physics Letters | 2008

Giant anisotropy of second harmonic generation for a single ZnSe nanowire

Virginijus Barzda; Richard Cisek; T. L. Spencer; U. Philipose; Harry E. Ruda; A. Shik

The effect of second harmonic generation was experimentally investigated in ZnSe nanowires grown by the vapor-liquid-solid method. The effect dramatically depended on the angle between the nanowire axis and the linear polarization of the excitation light. The magnitude of the effect was 20 times stronger for the parallel polarization in comparison with the perpendicular one. The results were theoretically explained in terms of a large difference in dielectric constants between the nanowire and the environment, resulting in a strong orientation-dependent optical electric field in the nanowire.


Photosynthesis Research | 2009

Optical microscopy in photosynthesis.

Richard Cisek; Leigh Spencer; Nicole Prent; Donatas Zigmantas; George S. Espie; Virginijus Barzda

Emerging as well as the most frequently used optical microscopy techniques are reviewed and image contrast generation methods in a microscope are presented, focusing on the nonlinear contrasts such as harmonic generation and multiphoton excitation fluorescence. Nonlinear microscopy presents numerous advantages over linear microscopy techniques including improved deep tissue imaging, optical sectioning, and imaging of live unstained samples. Nonetheless, with the exception of multiphoton excitation fluorescence, nonlinear microscopy is in its infancy, lacking protocols, users and applications; hence, this review focuses on the potential of nonlinear microscopy for studying photosynthetic organisms. Examples of nonlinear microscopic imaging are presented including isolated light-harvesting antenna complexes from higher plants, starch granules, chloroplasts, unicellular alga Chlamydomonas reinhardtii, and cyanobacteria Leptolyngbya sp. and Anabaena sp. While focusing on nonlinear microscopy techniques, second and third harmonic generation and multiphoton excitation fluorescence microscopy, other emerging nonlinear imaging modalities are described and several linear optical microscopy techniques are reviewed in order to clearly describe their capabilities and to highlight the advantages of nonlinear microscopy.


Biomedical Optics Express | 2010

Differential microscopy for fluorescence-detected nonlinear absorption linear anisotropy based on a staggered two-beam femtosecond Yb:KGW oscillator.

Daaf Sandkuijl; Richard Cisek; Arkady Major; Virginijus Barzda

We present a new laser system and nonlinear microscope, designed for differential nonlinear microscopy. The microscope features time-correlated single photon counting of multiphoton fluorescence generated by an alternating pulse-train of orthogonally polarized pulses. The generated nonlinear signal is separated using home-built electronics. Results are presented on fluorescence-detected nonlinear absorption linear anisotropy (FDNALA) of chloroplasts in Asparagus Sprengerii Regel and of Congo Red-stained cellulose.


Journal of Computational Chemistry | 2011

Three‐dimensional visualization of the first hyperpolarizability tensor

Adam Tuer; Serguei Krouglov; Richard Cisek; Danielle Tokarz; Virginijus Barzda

With polarization dependent second harmonic generation (SHG) microscopy becoming a more popular method for investigating the structure of biological materials, there is a need to develop tools with which to understand and interpret the observed SHG properties. Quantum mechanical calculations of the hyperpolarizability tensor have become a popular method for understanding the SHG properties of biomolecules. Visualization of the full hyperpolarizability tensor, termed the unit sphere representation, has been developed to provide insight and intuition on the relationship between SHG properties and molecules. A single vector representation is also presented, which approximates the SHG properties of molecules for certain cases, where the anisotropy is negligible.


Journal of Biomedical Optics | 2008

Intermyofilament dynamics of myocytes revealed by second harmonic generation microscopy

Nicole Prent; Chantal Green; Catherine Greenhalgh; Richard Cisek; Arkady Major; Bryan A. Stewart; Virginijus Barzda

Drosophila melanogaster larva myocytes are imaged with second harmonic generation (SHG) microscopy undergoing forced stretching and rhythmic contractions to determine the nature of the SHG signal. During stretching, double peaked SHG profiles of the anisotropic (A-) bands evolve into single peaks with a higher SHG intensity. The dip in the intensity profile at the center of the A-band is attributed to destructive interference from out-of-phase second harmonic radiating myosin molecules that, in the central region of myofilaments, are arranged antiparallel. An intensity increase at the center of the A-band appears during forced stretching due to a small, less than 100 nm, intermyofilament separation of the antiparallel myosin molecules leading to constructive interference of the SHG radiation. In addition, the same phenomenon occurs during periodic contractions of the myocyte, where an SHG intensity increase with the lengthening of sarcomeres is observed. The SHG intensity dependence on sarcomere length can be used for imaging myocyte contractions with low resolution microscopy, and can be applied for the development of diagnostic tools where monitoring of muscle contraction dynamics is required.

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Adam Tuer

University of Toronto

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