Rob Bergsma

The Contribution of Social Effects to Heritable Variation in Finishing Traits of Domestic Pigs (Sus scrofa)

Social interactions among individuals are ubiquitous both in animals and in plants, and in natural as well as domestic populations. These interactions affect both the direction and the magnitude of responses to selection and are a key factor in evolutionary success of species and in the design of breeding schemes in agriculture. At present, however, very little is known of the contribution of social effects to heritable variance in trait values. Here we present estimates of the direct and social genetic variance in growth rate, feed intake, back fat thickness, and muscle depth in a population of 14,032 domestic pigs with known pedigree. Results show that social effects contribute the vast majority of heritable variance in growth rate and feed intake in this population. Total heritable variance expressed relative to phenotypic variance was 71% for growth rate and 70% for feed intake. These values clearly exceed the usual range of heritability for those traits. Back fat thickness and muscle depth showed no heritable variance due to social effects. Our results suggest that genetic improvement in agriculture can be substantially advanced by redirecting breeding schemes, so as to capture heritable variance due to social effects.

Genetic parameters and predicted selection results for maternal traits related to lactation efficiency in sows

The increased productivity of sows increases the risk of a more pronounced negative energy balance during lactation. One possibility to prevent this is to increase the lactation efficiency (LE) genetically and thereby increase milk output for a given feed intake and mobilization of body tissue. The benefits of selection for LE depend on its heritability and the relationships with other traits of interest. The objectives of this study were to estimate genetic parameters for LE, its underlying traits, and to predict the consequences of current selection strategies in dam lines. Data from 4 farms were available to estimate genetic parameters. Heritabilities were estimated by using a univariate repeatability model, and genetic correlations were estimated bivariately. Selection index theory was used to predict the genetic progress by 3 alternative breeding programs: 1) a breeding program that aimed at balanced progress in the total number of piglets born, piglet mortality, and percent prolonged interval from weaning to estrus; 2) extension of this breeding goal with LE; and 3) a breeding goal that included only one selection criterion, litter weight gain, to demonstrate the effect of indirect selection for milk production. The heritability for LE was low (0.12). Body fat mass (0.52) and BW (0.45) of sows at the beginning of lactation showed the greatest heritabilities. Protein mass at the beginning of lactation, protein loss, weight loss, and ad libitum feed intake during lactation showed moderate heritabilities (0.39, 0.21, 0.20, and 0.30, respectively). Low to moderate heritabilities were found for litter weight at birth, within-litter SD in the birth weight of piglets, litter weight gain, fat loss, and restricted feed intake during lactation (0.19, 0.09, 0.18, 0.05, and 0.14, respectively). Within-litter SD in the weaning weight of piglets showed no genetic variability. It was predicted that a breeding goal for dam lines with an emphasis on the total number of piglets born, piglet mortality, and percent prolonged interval from weaning to estrus would not dramatically change BW or body composition at the beginning of lactation, or mobilization of body tissue and feed intake during lactation. Inclusion of LE in the breeding goal will improve stayability, as defined by the first-litter survival of sows and LE itself, without negative consequences for other economically important traits. Nevertheless, it might be worthwhile to design a breeding goal in which LE increases and feed intake remains unchanged.

Genetic correlations between lactation performance and growing-finishing traits in pigs.

Genetic selection for increased litter size of sows increases the risk of a large negative energy balance during lactation. Furthermore, the feed intake capacity of the lactating sows might be reduced due to the simultaneous selection for greater feed efficiency during the growth phase when sows were actually reared as finishers but later on selected for breeding. There is a need to improve lactation performance of sows and continue selection for feed efficiency of grower-finishers in commercial breeding. Therefore, this study was conducted to estimate genetic correlations between growing-finishing traits and lactation performance traits. An additional objective was to study the impact of including additive social effects in the animal model on genetic correlation estimates. Analyses were performed on a population of 1,149 commercial crossbred sows with repeated observations on lactation performance traits and their 7,723 grower-finisher offspring. The genetic correlation between daily BW gain of grower-finishers and starting BW of lactating sows was positive (rg = 0.24; P < 0.05). The correlation between off-test backfat of grower-finishers and fat mass of lactating sows was also positive (rg = 0.53; P < 0.05). The genetic regulation of feed intake from the beginning of lactation seems to differ from the genetic regulation of feed intake during the growing-finishing period, as the correlation between these 2 traits was low (rg = +0.23; P < 0.05). Feed efficiency during growing-finishing and lactation phases showed similar tendencies as the genetic correlation between residual feed intake of the grower-finisher and lactation efficiency of sows was -0.51 (P < 0.05). Taking heritable social effects into account for daily BW gain and feed intake did not affect the genetic correlation estimates, either within growing-finishing traits or between growing-finishing traits and lactation performance traits. It was concluded that in the absence of antagonistic genetic correlations, selection for growing-finishing traits in dam lines could be combined with selection for lactation performance traits.

Exploring breeding opportunities for reduced thermal sensitivity of feed intake in the lactating sow.

The aims of this study were, first, to evaluate the effects of climatic variables on daily feed intake of lactating sows and, second, to establish whether the response of sows to variation in temperature on feed intake during lactation was heritable. A total of 82,614 records for daily feed intake during lactation were available for 848 sows with 3,369 litters farrowing from January 2000 to December 2007. Climatic parameters available from the nearest weather station were maximum 24 h outside temperature, day length changes, and humidity. Although ambient room temperature was modified at the animal level in the farrowing shed, these climatic variables still had a significant effect on feed intake during lactation. Regression coefficients temperature and humidity were 0.01385 ± 0.00300 (temperature) - 0.00031 ± 0.00009 (temperature(2)) and 0.01443 ± 0.00620 (humidity) - 0.00009 ± 0.00004 (humidity(2)). There was an interaction between temperature and humidity, partly due to the climate control in the farrowing shed. At low temperature, feed intake increased considerably with greater humidity, in contrast to a small reduction in feed intake with greater humidity at high temperature. Day length change was modeled with a cosine function. At the start of autumn (September 21), sows ate 0.36 ± 0.056 kg/d less feed than at the start of spring (March 21). Daily feed intake during lactation was described as a function of days in lactation and as a function of both days in lactation and temperature using random regression models. The average heritability and repeatability summarized over the day in lactation at the mean temperature were 0.21 and 0.69, respectively. Genetic variance of temperature response on feed intake was less than 20% of the day effect. The permanent environmental variance was 2-fold (day) and 4-fold (temperature) greater than the corresponding additive genetic variance. Heritabilities of daily feed intake were greater during the first week of lactation compared with the rest of lactation. The genetic correlation between days decreased as time increased down to about 0.2 between the first and last day in lactation. The genetic correlation between feed intake records at the extreme temperatures decreased to about -0.35. It was concluded that random regression models are useful for research and results may be used to develop simpler models that can be implemented in practical breeding programs. An effect of temperature on lactation feed intake was found even in this climate-controlled environment located in a temperate climate zone. Larger effects are expected in more extreme climatic conditions with less temperature-controlled farrowing sheds.

Maternal and social genetic effects on average daily gain of piglets from birth until weaning

The aim of this study was to investigate whether there is heritable social variation in ADG from birth until weaning in piglets. Nursing and the establishment of teat order are sources of social interaction among suckling piglets nursed by the same sow. If a heritable social effect is present, but ignored, the selected animals might be the most competitive ones with negative effects on growth of their group mates, resulting in less response to selection than expected. The social interaction model was extended with a maternal component to estimate genetic maternal and social effects. Four different animal models were compared: a basic model with a direct heritable effect only; a social model accounting for direct and social heritable effects; a maternal model with a heritable maternal effect in addition to the basic model; and a social-maternal model accounting for direct, social, and maternal heritable effects. Estimates of direct, maternal, and social heritability were 0.07, 0.06, and around 0.0007 (not significantly different from zero, SE = 0.0005), respectively. Total heritable variance, including direct, social, and maternal heritable variance and their covariances ranged from 0.07 to 0.15 of the phenotypic variation. Both maternal models were significantly better than equivalent nonmaternal models (P <or= 0.005). The social model was not significantly better than the basic model (P = 0.102), and the social-maternal model was also not significantly better than the maternal model (P = 0.486). There was no evidence for heritable social effects among piglets in a group. The generally used maternal model fit the data as well as the social-maternal model. Sufficient cross-fostering is needed to partition social and maternal variation.

Fecal microbial composition associated with variation in feed efficiency in pigs depends on diet and sex

Dietary fiber content and composition affect microbial composition and activity in the gut, which in turn influence energetic contribution of fermentation products to the metabolic energy supply in pigs. This may affect feed efficiency (FE) in pigs. The present study investigated the relationship between the fecal microbial composition and FE in individual growing-finishing pigs. In addition, the effects of diet composition and sex on the fecal microbiome were studied. Fecal samples were collected of 154 grower-finisher pigs (3-way crossbreeds) the day before slaughter. Pigs were either fed a diet based on corn/soybean meal (CS) or a diet based on wheat/barley/by-products (WB). Fecal microbiome was characterized by 16S ribosomal DNA sequencing, clustered by operational taxonomic unit (OTU), and results were subjected to a discriminant approach combined with principal component analysis to discriminate diets, sexes, and FE extreme groups (10 high and 10 low FE pigs for each diet by sex-combination). Pigs on different diets and males vs. females had a very distinct fecal microbiome, needing only 2 OTU for diet (P = 0.020) and 18 OTU for sex (P = 0.040) to separate the groups. The 2 most important OTU for diet, and the most important OTU for sex, were taxonomically classified as the same bacterium. In pigs fed the CS diet, there was no significant association between FE and fecal microbiota composition based on OTU (P > 0.05), but in pigs fed the WB diet differences in FE were associated with 17 OTU in males (P = 0.018) and to 7 OTU in females (P = 0.010), with 3 OTU in common for both sexes. In conclusion, our results showed a diet and sex-dependent relationship between FE and the fecal microbial composition at slaughter weight in grower-finisher pigs.

Genetic correlations between feed efficiency traits, and growth performance and carcass traits in purebred and crossbred pigs

Selection for feed efficiency (FE) is a strategy to reduce the production costs per unit of animal product, which is one of the major objectives of current animal breeding programs. In pig breeding, selection for FE and other traits traditionally takes place based on purebred pig (PB) performance at the nucleus level, while pork production typically makes use of crossbred animals (CB). The success of this selection, therefore, depends on the genetic correlation between the performance of PB and CB (rpc) and on the genetic correlation (rg) between FE and the other traits that are currently under selection. Different traits are being used to account for FE, but the rpc has been reported only for feed conversion rate. Therefore, this study aimed 1) to estimate the rpc for growth performance, carcass, and FE traits; 2) to estimate rg between traits within PB and CB populations; and 3) to compare three different traits representing FE: feed conversion rate, residual energy intake (REI), and residual feed intake (RFI). Phenotypes of 194,445 PB animals from 23 nucleus farms, and 46,328 CB animals from three farms where research is conducted under near commercial production conditions were available for this study. From these, 22,984 PB and 8,657 CB presented records for feed intake. The PB population consisted of five sire and four dam lines, and the CB population consisted of terminal cross-progeny generated by crossing sires from one of the five PB sire lines with commercially available two-way maternal sow crosses. Estimates of rpc ranged from 0.61 to 0.71 for growth performance traits, from 0.75 to 0.82 for carcass traits, and from 0.62 to 0.67 for FE traits. Estimates of rg between growth performance, carcass, and FE traits differed within PB and CB. REI and RFI showed substantial positive rg estimates in PB (0.84) and CB (0.90) populations. The magnitudes of rpc estimates indicate that genetic progress is being realized in CB at the production level from selection on PB performance at nucleus level. However, including CB phenotypes recorded on production farms, when predicting breeding values, has the potential to increase genetic progress for these traits in CB. Given the genetic correlations with growth performance traits and the genetic correlation between the performance of PB and CB, REI is an attractive FE parameter for a breeding program.

Effect of feeding cereals–alternative ingredients diets or corn–soybean meal diets on performance and carcass characteristics of growing–finishing gilts and boars

Pig-breeding businesses have resulted in global breeding programs that select pigs to perform well on high-energy high-protein diets, which are traditionally based on corn and soybean meal. Nowadays, there is a shift toward diets based on cereals and co-products, therefore, high dietary inclusion of co-products can modify the expected performance of these pigs. The objective of this study was to evaluate the effect of feeding a cereals-alternative ingredients diet (CA-diet) compared to a corn-soybean meal diet (CS-diet) on the growth performance, feed efficiency, and carcass characteristics of genetically similar growing-finishing gilts and boars. In total, 160 pigs, 80 gilts and 80 boars, coming from 18 litters were used. The pigs were blocked based on litter, to ensure no genetic differences between the 2 treatments. For the starter phase, pigs fed the CA-diet performed in terms of growth, and feed efficiency, as good as the pigs fed CS-diet (P > 0.05). For the grower phase, pigs fed the CA-diet had the same ADFI (P > 0.05), but a lower daily energy intake (ADEI) (P < 0.001), and same growth performance (P > 0.05) than pig fed the CS-diet, therefore pigs fed the CA-diet were more efficient in terms of residual energy intake (REI) (P < 0.001). For the finisher phase, interaction between diet and sex had an effect on ADFI (P < 0.001), ADEI (P < 0.001), ADG (P = 0.010), and lipid deposition (Ld) (P = 0.016). Pigs fed the CA-diet were less efficient than pigs fed the CS-diet, i.e., G:F (P < 0.001), RFI (P < 0.001), and REI (P = 0.007). In general, feeding a CA-diet to pigs showed to improve the ratio between Pd and Ld, especially for boars. Also, pigs fed the CA-diet showed thinner back fat thickness (P < 0.001), same loin depth thickness (P > 0.05), but lower dressing percentage (P < 0.001), than pigs fed the CS-diet.

Corrigendum: Fecal microbial composition associated with variation in feed efficiency in pigs depends on diet and sex

Dietary fiber content and composition affect microbial composition and activity in the gut, which in turn influence energetic contribution of fermentation products to the metabolic energy supply in pigs. This may affect feed efficiency (FE) in pigs. The present study investigated the relationship between the fecal microbial composition and FE in individual growing-finishing pigs. In addition, the effects of diet composition and sex on the fecal microbiome were studied. Fecal samples were collected of 154 grower-finisher pigs (3-way crossbreeds) the day before slaughter. Pigs were either fed a diet based on corn/soybean meal (CS) or a diet based on wheat/barley/by-products (WB). Fecal microbiome was characterized by 16S ribosomal DNA sequencing, clustered by operational taxonomic unit (OTU), and results were subjected to a discriminant approach combined with principal component analysis to discriminate diets, sexes, and FE extreme groups (10 high and 10 low FE pigs for each diet by sex-combination). Pigs on different diets and males vs. females had a very distinct fecal microbiome, needing only 2 OTU for diet (P = 0.020) and 18 OTU for sex (P = 0.040) to separate the groups. The 2 most important OTU for diet, and the most important OTU for sex, were taxonomically classified as the same bacterium. In pigs fed the CS diet, there was no significant association between FE and fecal microbiota composition based on OTU (P > 0.05), but in pigs fed the WB diet differences in FE were associated with 17 OTU in males (P = 0.018) and to 7 OTU in females (P = 0.010), with 3 OTU in common for both sexes. In conclusion, our results showed a diet and sex-dependent relationship between FE and the fecal microbial composition at slaughter weight in grower-finisher pigs.

Genotype by feed interaction for feed efficiency and growth performance traits in pigs

A major objective of pork producers is to reduce production cost. Feeding may account for over 75% of pork production costs. Thus, selecting pigs for feed efficiency (FE) traits is a priority in pig breeding programs. While in the Americas, pigs are typically fed high-input diets, based on corn and soybean meal (CS); in Western Europe, pigs are commonly fed diets based on wheat and barley with high amounts of added protein-rich coproducts (WB), e.g., from milling and seed-oil industries. These two feeding scenarios provided a realistic setting for investigating a specific type of genotype by environment interaction; thus, we investigated the genotype by feed interaction (GxF). In the presence of a GxF, different feed compositions should be considered when selecting for FE. This study aimed to 1) verify the presence of a GxF for FE and growth performance traits in different growth phases (starter, grower, and finisher) of 3-way crossbred growing-finishing pigs fed either a CS (547 boars and 558 gilts) or WB (567 boars and 558 gilts) diet; and 2) to assess and compare the expected responses to direct selection under the 2 diets and the expected correlated responses for one diet to indirect selection under the other diet. We found that GxF did not interfere in the ranking of genotypes under both diets for growth, protein deposition, feed intake, energy intake, or feed conversion rate. Therefore, for these traits, we recommend changing the diet of growing-finishing pigs from high-input feed (i.e., CS) to feed with less valuable ingredients, as WB, to reduce production costs and the environmental impact, regardless of which diet is used in selection. We found that GxF interfered in the ranking of genotypes and caused heterogeneity of genetic variance under both diets for lipid deposition (LD), residual energy intake (REI), and residual feed intake (RFI). Thus, selecting pigs under a diet different from the diet used for growing-finishing performance could compromise the LD in all growth phases, compromise the REI and RFI during the starter phase, and severely compromise the REI during the grower phase. In particular, when pigs are required to consume a WB diet for growing-finishing performance, pigs should be selected for FE under the same diet. Breeding pigs for FE under lower-input diets should be considered, because FE traits will become more important and lower-input diets will become more widespread in the near future.