Rosangela Itri

Structural Characterization of the pH-Denatured States of Ferricytochrome-c by Synchrotron Small Angle X-Ray Scattering

The ferricytochrome-c (cyt-c) shows a complex unfolding pathway characterized by a series of stable partially folded states. When titrated with HCl at low ionic strength, two transitions are detected. At pH 2, cyt-c assumes the U1 unfolded state, whereas the successive addition of Cl(-) ion from either HCl or NaCl induces the recompaction to a molten globule conformation (A1 and A2 states, respectively). A second unfolded state (U2) is also observed at pH 12. Recent data evidence different features for the local structure of the heme in the different states. To derive relationships between local and overall conformations, we analyzed the structural characteristics of the different states by synchrotron small angle X-ray scattering. The results show that in the acidic-unfolded U1 form the protein assumes a worm-like conformation, whereas in the alkaline-unfolded U2 state, the cyt-c is globular. Moreover, the molten globule states induced by adding HCl or NaCl to U1 appear structurally different: in the A1 state cyt-c is dimeric and less compact, whereas in the A2 form the protein reverts to a globular-like conformation. According to the local heme structure, a molecular model for the different forms is derived.

Characterization of Heparin-induced Glyceraldehyde-3-phosphate Dehydrogenase Early Amyloid-like Oligomers and Their Implication in α-Synuclein Aggregation

Background: GAPDH and glycosaminoglycans (GAGs) have been routinely found in Parkinson disease amyloid aggregates. Results: Heparin and heparan sulfate induce the formation of GAPDH amyloid-like oligomers, which were characterized by using biophysical techniques. Conclusion: Heparin-induced GAPDH early oligomeric species are able to reduce the amount of α-synuclein (AS) prefibrillar species. Significance: GAPDH oligomeric species might be taken into account in recruiting of AS toxic species. Lewy bodies and Lewy neurites, neuropathological hallmarks of several neurological diseases, are mainly made of filamentous assemblies of α-synuclein. However, other macromolecules including Tau, ubiquitin, glyceraldehyde-3-phosphate dehydrogenase, and glycosaminoglycans are routinely found associated with these amyloid deposits. Glyceraldehyde-3-phosphate dehydrogenase is a glycolytic enzyme that can form fibrillar aggregates in the presence of acidic membranes, but its role in Parkinson disease is still unknown. In this work, the ability of heparin to trigger the amyloid aggregation of this protein at physiological conditions of pH and temperature is demonstrated by infrared and fluorescence spectroscopy, dynamic light scattering, small angle x-ray scattering, circular dichroism, and fluorescence microscopy. Aggregation proceeds through the formation of short rod-like oligomers, which elongates in one dimension. Heparan sulfate was also capable of inducing glyceraldehyde-3-phosphate dehydrogenase aggregation, but chondroitin sulfates A, B, and C together with dextran sulfate had a negligible effect. Aided with molecular docking simulations, a putative binding site on the protein is proposed providing a rational explanation for the structural specificity of heparin and heparan sulfate. Finally, it is demonstrated that in vitro the early oligomers present in the glyceraldehyde-3-phosphate dehydrogenase fibrillation pathway promote α-synuclein aggregation. Taking into account the toxicity of α-synuclein prefibrillar species, the heparin-induced glyceraldehyde-3-phosphate dehydrogenase early oligomers might come in useful as a novel therapeutic strategy in Parkinson disease and other synucleinopathies.

The Presence of Sterols Favors Sticholysin I-Membrane Association and Pore Formation Regardless of Their Ability to Form Laterally Segregated Domains

Sticholysin I (St I) is a pore-forming toxin (PFT) produced by the Caribbean Sea anemone Stichodactyla helianthus belonging to the actinoporin protein family, a unique class of eukaryotic PFT. As for actinoporins, it has been proposed that the presence of cholesterol (Chol) and the coexistence of lipid phases increase binding to the target membrane and pore-forming ability. However, little is known about the role of membrane structure and dynamics (phase state, fluidity, and the presence of lipid domains) on the activity of actinoporins or which regions of the membrane are the most favorable for protein insertion, oligomerization, and eventually pore formation. To gain insight into the role of membrane properties on the functional activity of St I, we studied its binding to monolayers and vesicles of phosphatidylcholine (PC), sphingomyelin (SM), and sterols inducing (ergosterol -Erg and cholesterol -Chol) or not (cholestenone - Cln) membrane phase segregation in liquid ordered (Lo) and liquid disordered (Ld) domains. This study revealed that St I binds and permeabilizes with higher efficiency sterol-containing membranes independently of their ability to form domains. We discuss the results in terms of the relevance of different membrane properties for the actinoporins mechanism of action, namely, molecular heterogeneity, specially potentiated in membranes with sterols inducers of phase separation (Chol or Erg) or Cln, a sterol noninducer of phase separation but with a high propensity to induce nonlamellar phase. The role of the Ld phase is pointed out as the most suitable platform for pore formation. In this regard, such regions in Chol-containing membranes seem to be the most favored due to its increased fluidity; this property promotes toxin insertion, diffusion, and oligomerization leading to pore formation.

Binding of Methylene Blue onto Langmuir Monolayers Representing Cell Membranes May Explain Its Efficiency as Photosensitizer in Photodynamic Therapy

We provide evidence for the electrostatic interactions between the cationic photosensitizer methylene blue (MB) and cell membrane models represented by neat and mixed Langmuir monolayers of dioleylphosphatidylcholine (DOPC) and 1,1,2,2-tetraoleoylcardiolipin (CL). From surface pressure measurements, MB was found to adsorb strongly and expand CL-containing monolayers, while it caused an apparent decreasing in molecular area on neat DOPC monolayer. The binding site of MB could be inferred from data with the surface-specific polarization-modulated infrared reflection-absorption spectroscopy (PM-IRRAS) technique, where changes induced by MB were observed in the vibrational modes of the phosphate groups of both CL and DOPC. The incorporation of MB also affected the carbonyl groups and the packing of the alkyl chains, thus indicating that MB binding site favors singlet oxygen generation close to the double bonds in the alkyl chains, an important requirement for photodynamic efficiency. Significantly, the data presented here demonstrate that MB may act in membranes composed by PCs, such as mammalian plasma membranes, and in those containing CL, as in bacterial and inner mitochondrial membranes.

Liposomal systems as carriers for bioactive compounds

Since the revolutionary discovery that phospholipids can form closed bilayered structures in aqueous systems, the study of liposomes has become a very interesting area of research. The versatility and amazing biocompatibility of liposomes has resulted in their wide-spread use in many scientific fields, and many of their applications, especially in medicine, have yielded breakthroughs in recent decades. Specifically, their easy preparation and various structural aspects have given rise to broadly usable methodologies to internalize different compounds, with either lipophilic or hydrophilic properties. The study of compounds with potential biotechnological application(s) is generally related to evaluation and risk assessment of the possible cytotoxic or therapeutic effects of the compound under study. In most cases, undesirable side-effects are associated with an interaction of the liposome with the cell membrane and/or its absorption and subsequent interaction with a cellular biomolecule. Liposomal carrier systems have an unprecedented potential for delivering bioactive substances to specific molecular targets due to their biocompatibility, biodegradability and low toxicity. Liposomes are therefore considered to be an invaluable asset in applied biotechnology studies due to their potential for interaction with both hydrophilic and lipophilic compounds.

Membrane Structure Characterization Using Variable-Period X-Ray Standing Waves

The variable-period x-ray standing wave (XSW) technique is emerging as a powerful tool for studying membrane structure. However, two significant problems arise when the method is used to characterize membranes of thickness dL < 100 A. First, the surface roughness, sigma(r), of the supporting reflecting mirror convolutes with the intrinsic half-width of the marker atom distribution in the membrane, sigma(in), and contributes to an apparent half-width, sigma, which is measured in the XSW experiment. Here we show how the latter terms are related quantitatively [sigma(in) = (sigma2 - sigma(r)2)(1/2)], such that rough mirrors give rise to larger marker atom distribution widths, sigma, and how the required quantity sigma(in) can be determined in the XSW measurement. Second, when the mean position of the marker atom layer, (z), is close to one or both boundaries of the membrane, its distribution function is truncated at the boundary. In such cases, we show why marker atom distribution should be expressed in terms of its first and second moments. We also demonstrate by numerical simulations of realistic samples how the physical parameters, sigma(r), sigma, (z), and dL, affect x-ray reflectivity and fluorescence yield profiles as an aid in their interpretation.

How Does the Ethoxylated Grafting of Polyelectrolytes Affect the Self-Assembly of Polyanion−Cationic Surfactant Complex Salts?

A cationic surfactant and different anionic copolymers randomly grafted with side chains of ethylene oxide were used to prepare stoichiometric complex salts. Variations in the length or proportion of side chains were shown to be responsible for affecting the surfactant phase behavior in water, resulting in the observation of a number of structures characterized by small angle X-ray scattering measurements, including a hierarchical micellar system and different liquid-crystalline phases. Additionally, although aqueous mixtures of stoichiometric complex salts usually phase separate, the presence of a sufficiently high weight fraction of ethylene oxide side chains can enhance the solubility of the complex salt aggregates in water over a wide range of concentration. Moreover, a dispersion of an isotropic concentrated solution of complex salts is formed at higher temperatures in a reversible process. In summary, this study proves the importance of the polyion structure for tuning the properties of systems of complex salts.

Spatial resolution of the variable-period x-ray standing-wave method as applied to model membranes.

A series of model membranes as Langmuir-Blodgett (LB) films composed of long-chain zinc alkanoates (saturated fatty acid salts) was used to evaluate the spatial resolution of the variable-period x-ray standing-wave (XSW) technique. The chain length dependence of the zinc mean position (z) above the supporting substrate demonstrates that it is possible to detect differences in (z) of 1-2 A. Thus 1-2 A is the spatial resolution of the method in the current application. The data show that the chain tilt angle is chain length dependent, varying from 40 degrees to 0 degrees for alkanoates 18 and 24 carbon atoms long, respectively. The spread about the mean position of the zinc in the film, sigma(in), was found to be independent of chain length at 10.0 A for all members of the series. Sigma(in) was shown to be insensitive to the presence of a spacer omega-tricosenoic acid (omegaTA) bilayer placed between the zinc alkanoate LB film and the coated gold mirror. However, an overlayer of omegaTA sharpened the zinc ion distribution and lowered the chain tilt angle. This study provides important information regarding sample composition and constitution that facilitates membrane structure determination by XSWs.

Unraveling the Heparin-Induced Protofibril Structure of GAPDH

Citotoxicity in Parkinson disease has been linked to an oligomeric arrangement of the protein α-synuclein (α-SN), which can alter the membrane permeability. In this work we could demonstrate the ability of heparin-induced Gliceraldehyde-3-phosphate dehydrogenase (GAPDH) aggregates to modulate the effect of oligomeric α-SN species on cell survival and membrane stability. From the GAPDH species formed after heparin addition, a cylinder-shaped protofibril species with an average length of 22 nm and a diameter of 12 nm are able to sequester α-SN oligomers. Using biocomputational techniques we obtained the first all-atom model of the GAPDH protofibril capable to satisfy experimental restrictions deduced from small angle X-ray scattering and mass spectrometry. We also propose a fibrillation pathway for the heparin-induced GAPDH aggregation. Upon heparin binding to GAPDH, the tetrameric state of the enzyme is lost and native-like dimer species appeared. The formed dimers are the building block of higher orders aggregates, which in a very fast way assemble to hexamers that piling up allowing the formation of the protofibrilar species.

Structural Studies of Septin 2 in Solution

Septins are GTP-binding proteins that were originally discovered in the budding yeast Saccharomyces cerevisiae cell division cycle forming filaments that had two main functions: scaffold protein-protein interactions and act as diffusion barriers regulating the intracellular localization of proteins. They are largely found also in neurodegenerative pathologies such as Parkinson, Alzheimers diseases also solid tumors, forming highly organized fiber-like aggregates known as amyloid fibrils that are mostly composed by cross-β sheets.In the present work, we used small angle x-ray scattering (SAXS) and dynamic light scattering (DLS) to study the formation and evolution of these aggregates depending on temperature and concentration.We performed SAXS measurements with the entire Septin 2 protein (SEPT2) and its GTPase domain (SEPT2G). SAXS results indicate that, at room temperature, there is a coexistence of two cylinder-like aggregates of different sizes for both studied proteins. For low concentration of SEPT2, the length of the smaller cylinders amounts to 170 A, whereas the cross-section is approximately 60 A-wide, consistent with elongated filaments; for the larger cylinders the measurements were of 420 and 300 A, respectively.Concerning SEPT2G, the SAXS data analysis reveals that for the lowest concentration and temperature, the cylinder-like aggregate cross-section radius and the length are equal to 30 and 180 A, respectively; for the longer cylinders we found 170 and 430 A for the cylinder cross-section radius and length, respectively.For both proteins, it is possible to observe the presence of a small fiber coexisting with larger aggregates in solution that grows with the increasing of temperature and concentration. We are now performing DLS measurements to better characterize the longer cylinders, once their lengths are not accessible to SAXS resolution.Acknowledgments: the authors thank FAPESP and CNPq for financial support.