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Dive into the research topics where Rudi Berera is active.

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Featured researches published by Rudi Berera.


Nature | 2007

Identification of a mechanism of photoprotective energy dissipation in higher plants

Alexander V. Ruban; Rudi Berera; Cristian Ilioaia; Ivo H. M. van Stokkum; John T. M. Kennis; Andrew A. Pascal; Herbert van Amerongen; Bruno Robert; Peter Horton; Rienk van Grondelle

Under conditions of excess sunlight the efficient light-harvesting antenna found in the chloroplast membranes of plants is rapidly and reversibly switched into a photoprotected quenched state in which potentially harmful absorbed energy is dissipated as heat, a process measured as the non-photochemical quenching of chlorophyll fluorescence or qE. Although the biological significance of qE is established, the molecular mechanisms involved are not. LHCII, the main light-harvesting complex, has an inbuilt capability to undergo transformation into a dissipative state by conformational change and it was suggested that this provides a molecular basis for qE, but it is not known if such events occur in vivo or how energy is dissipated in this state. The transition into the dissipative state is associated with a twist in the configuration of the LHCII-bound carotenoid neoxanthin, identified using resonance Raman spectroscopy. Applying this technique to study isolated chloroplasts and whole leaves, we show here that the same change in neoxanthin configuration occurs in vivo, to an extent consistent with the magnitude of energy dissipation. Femtosecond transient absorption spectroscopy, performed on purified LHCII in the dissipative state, shows that energy is transferred from chlorophyll a to a low-lying carotenoid excited state, identified as one of the two luteins (lutein 1) in LHCII. Hence, it is experimentally demonstrated that a change in conformation of LHCII occurs in vivo, which opens a channel for energy dissipation by transfer to a bound carotenoid. We suggest that this is the principal mechanism of photoprotection.


Photosynthesis Research | 2009

Ultrafast transient absorption spectroscopy: principles and application to photosynthetic systems.

Rudi Berera; Rienk van Grondelle; John T. M. Kennis

The photophysical and photochemical reactions, after light absorption by a photosynthetic pigment–protein complex, are among the fastest events in biology, taking place on timescales ranging from tens of femtoseconds to a few nanoseconds. The advent of ultrafast laser systems that produce pulses with femtosecond duration opened up a new area of research and enabled investigation of these photophysical and photochemical reactions in real time. Here, we provide a basic description of the ultrafast transient absorption technique, the laser and wavelength-conversion equipment, the transient absorption setup, and the collection of transient absorption data. Recent applications of ultrafast transient absorption spectroscopy on systems with increasing degree of complexity, from biomimetic light-harvesting systems to natural light-harvesting antennas, are presented. In particular, we will discuss, in this educational review, how a molecular understanding of the light-harvesting and photoprotective functions of carotenoids in photosynthesis is accomplished through the application of ultrafast transient absorption spectroscopy.


Biophysical Journal | 2009

A Mechanism of Energy Dissipation in Cyanobacteria

Rudi Berera; Ivo H. M. van Stokkum; S. D'Haene; John T. M. Kennis; Rienk van Grondelle; Jan P. Dekker

When grown under a variety of stress conditions, cyanobacteria express the isiA gene, which encodes the IsiA pigment-protein complex. Overexpression of the isiA gene under iron-depletion stress conditions leads to the formation of large IsiA aggregates, which display remarkably short fluorescence lifetimes and thus a strong capacity to dissipate energy. In this work we investigate the underlying molecular mechanism responsible for chlorophyll fluorescence quenching. Femtosecond transient absorption spectroscopy allowed us to follow the process of energy dissipation in real time. The light energy harvested by chlorophyll pigments migrated within the system and eventually reaches a quenching site where the energy is transferred to a carotenoid-excited state, which dissipates it by decaying to the ground state. We compare these findings with those obtained for the main light-harvesting complex in green plants (light-harvesting complex II) and artificial light-harvesting antennas, and conclude that all of these systems show the same mechanism of energy dissipation, i.e., one or more carotenoids act as energy dissipators by accepting energy via low-lying singlet-excited S(1) states and dissipating it as heat.


Biophysical Journal | 2011

Molecular Adaptation of Photoprotection: Triplet States in Light-Harvesting Proteins

Andrew Gall; Rudi Berera; Maxime T. A. Alexandre; Andrew A. Pascal; Luc Bordes; Maria M. Mendes-Pinto; Sandra Andrianambinintsoa; Katerina V. Stoitchkova; Alessandro Marin; Leonas Valkunas; Peter Horton; John T. M. Kennis; Rienk van Grondelle; Alexander V. Ruban; Bruno Robert

The photosynthetic light-harvesting systems of purple bacteria and plants both utilize specific carotenoids as quenchers of the harmful (bacterio)chlorophyll triplet states via triplet-triplet energy transfer. Here, we explore how the binding of carotenoids to the different types of light-harvesting proteins found in plants and purple bacteria provides adaptation in this vital photoprotective function. We show that the creation of the carotenoid triplet states in the light-harvesting complexes may occur without detectable conformational changes, in contrast to that found for carotenoids in solution. However, in plant light-harvesting complexes, the triplet wavefunction is shared between the carotenoids and their adjacent chlorophylls. This is not observed for the antenna proteins of purple bacteria, where the triplet is virtually fully located on the carotenoid molecule. These results explain the faster triplet-triplet transfer times in plant light-harvesting complexes. We show that this molecular mechanism, which spreads the location of the triplet wavefunction through the pigments of plant light-harvesting complexes, results in the absence of any detectable chlorophyll triplet in these complexes upon excitation, and we propose that it emerged as a photoprotective adaptation during the evolution of oxygenic photosynthesis.


Journal of the American Chemical Society | 2016

Controlling Light Harvesting with Light

Michal Gwizdala; Rudi Berera; Diana Kirilovsky; Rienk van Grondelle; Tjaart P.J. Krüger

When exposed to intense sunlight, all organisms performing oxygenic photosynthesis implement various photoprotective strategies to prevent potentially lethal photodamage. The rapidly responding photoprotective mechanisms, occurring in the light-harvesting pigment-protein antennae, take effect within tens of seconds, while the dramatic and potentially harmful light intensity fluctuations manifest also on shorter time scales. Here we show that, upon illumination, individual phycobilisomes from Synechocystis PCC 6803, which, in vivo under low-light conditions, harvest solar energy, and have the built-in capacity to switch rapidly and reversibly into light-activated energy-dissipating states. Simultaneously measured fluorescence intensity, lifetime, and spectra, compared with a multicompartmental kinetic model, revealed that essentially any subunit of a phycobilisome can be quenched, and that the core complexes were targeted most frequently. Our results provide the first evidence for fluorescence blinking from a biologically active system at physiological light intensities and suggest that the light-controlled switches to intrinsically available energy-dissipating states are responsible for a novel type of photoprotection in cyanobacteria. We anticipate other photosynthetic organisms to employ similar strategies to respond instantly to rapid solar light intensity fluctuations. A detailed understanding of the photophysics of photosynthetic antenna complexes is of great interest for bioinspired solar energy technologies.


Biochimica et Biophysica Acta | 2014

Stark fluorescence spectroscopy reveals two emitting sites in the dissipative state of FCP antennas

Md. Wahadoszamen; Artur Ghazaryan; Hande E. Cingil; Anjue Mane Ara; Claudia Büchel; Rienk van Grondelle; Rudi Berera

Diatoms are characterized by very efficient photoprotective mechanisms where the excess energy is dissipated as heat in the main antenna system constituted by fucoxanthin-chlorophyll (Chl) protein complexes (FCPs). We performed Stark fluorescence spectroscopy on FCPs in their light-harvesting and energy dissipating states. Our results show that two distinct emitting bands are created upon induction of energy dissipation in FCPa and possibly in FCPb. More specifically one band is characterized by broad red shifted emission above 700nm and bears strong similarity with a red shifted band that we detected in the dissipative state of the major light-harvesting complex II (LHCII) of plants [26]. We discuss the results in the light of different mechanisms proposed to be responsible for photosynthetic photoprotection.


Biochimica et Biophysica Acta | 2015

Identification of common motifs in the regulation of light harvesting: The case of cyanobacteria IsiA.

Md. Wahadoszamen; S. D'Haene; Anjue Mane Ara; Elisabet Romero; Jan P. Dekker; Rienk van Grondelle; Rudi Berera

When cyanobacteria are grown under iron-limited or other oxidative stress conditions the iron stress inducible pigment-protein IsiA is synthesized in variable amounts. IsiA accumulates in aggregates inside the photosynthetic membrane that strongly dissipate chlorophyll excited state energy. In this paper we applied Stark fluorescence (SF) spectroscopy at 77K to IsiA aggregates to gain insight into the nature of the emitting and energy dissipating state(s). Our study shows that two emitting states are present in the system, one emitting at 684 nm and the other emitting at about 730 nm. The new 730 nm state exhibits strongly reduced fluorescence (F) together with a large charge transfer character. We discuss these findings in the light of the energy dissipation mechanisms involved in the regulation of photosynthesis in plants, cyanobacteria and diatoms. Our results suggest that photosynthetic organisms have adopted common mechanisms to cope with the deleterious effects of excess light under unfavorable growth conditions.


Biochimica et Biophysica Acta | 2014

Exploring the mechanism(s) of energy dissipation in the light harvesting complex of the photosynthetic algae Cyclotella meneghiniana

Charusheela Ramanan; Rudi Berera; Kathi Gundermann; Ivo H. M. van Stokkum; Claudia Büchel; Rienk van Grondelle

Photosynthetic organisms have developed vital strategies which allow them to switch from a light-harvesting to an energy dissipative state at the level of the antenna system in order to survive the detrimental effects of excess light illumination. These mechanisms are particularly relevant in diatoms, which grow in highly fluctuating light environments and thus require fast and strong response to changing light conditions. We performed transient absorption spectroscopy on FCPa, the main light-harvesting antenna from the diatom Cyclotella meneghiniana, in the unquenched and quenched state. Our results show that in quenched FCPa two quenching channels are active and are characterized by differing rate constants and distinct spectroscopic signatures. One channel is associated with a faster quenching rate (16ns⁻¹) and virtually no difference in spectral shape compared to the bulk unquenched chlorophylls, while a second channel is associated with a slower quenching rate (2.7ns⁻¹) and exhibits an increased population of red-emitting states. We discuss the origin of the two processes in the context of the models proposed for the regulation of photosynthetic light-harvesting. This article is part of a special issue entitled: photosynthesis research for sustainability: keys to produce clean energy.


Femtochemistry VII#R##N#Fundamental Ultrafast Processes in Chemistry, Physics, and Biology | 2006

A simple artificial light harvesting dyad as a mimic of nonphotochemical quenching in green plants

Rudi Berera; Ivo H. M. van Stokkum; Christian Herrero; Mikas Vengris; Gerdenis Kodis; Rodrigo E. Palacios; Herbert van Amerongen; Rienk van Grondelle; Devens Gust; Thomas Moore; Ana Moore; J.T.M. Kennis

A carotenoid can efficiently quench the Q y energy of phthalocyanine molecule. Target analysis provides evidence for the pivotal role of the carotenoid excited state in the quenching by showing that the spectrum of the quenching species resembles the carotenoid S 1 spectrum. However, energy transfer involving the carotenoid S 1 state alone cannot be solely responsible for the quenching because the process is solvent polarity dependent. This chapter performs a transient absorption measurement on a model carotenoid with 10 double bonds to gain further insights into the process. Solvent polarity-dependent shape changes that cannot be ascribed to the Sl state are detected. Similar changes are reported for several substituted carotenoids and assigned to an intramolecular charge transfer state. Results show that carotenoids can quench tetrapyrrole singlet excited states by means of energy transfer to optically forbidden carotenoid states. Expanding the conjugated system of the carotenoid by one double bond turns the carotenoid from a nonquencher into a strong quencher.


Proceedings of the National Academy of Sciences of the United States of America | 2006

A simple artificial light-harvesting dyad as a model for excess energy dissipation in oxygenic photosynthesis

Rudi Berera; Christian Herrero; Ivo H. M. van Stokkum; Mikas Vengris; Gerdenis Kodis; Rodrigo E. Palacios; Herbert van Amerongen; Rienk van Grondelle; Devens Gust; Thomas A. Moore; Ana L. Moore; John T. M. Kennis

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Devens Gust

Arizona State University

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Gerdenis Kodis

Arizona State University

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Herbert van Amerongen

Wageningen University and Research Centre

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