Ryuichiro Shinohara
National Institute for Environmental Studies
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Featured researches published by Ryuichiro Shinohara.
Environmental Science & Technology | 2012
Ryuichiro Shinohara; Akio Imai; Nobuyuki Kawasaki; Kazuhiro Komatsu; Ayato Kohzu; Shingo Miura; Tomoharu Sano; Takayuki Satou; Noriko Tomioka
Differences in biogenic phosphorus (P) compounds between sediment and suspended particles in aquatic environments are important for understanding the mechanisms of internal P loading, but these differences are still unknown. We used solution-state (31)P-nuclear magnetic resonance spectroscopy ((31)P NMR) with NaOH-ethylenediaminetetraacetic extraction to detect the multiple P compounds in suspended particles and sediment in the eutrophic Lake Kasumigaura, including orthophosphate monoesters, orthophosphate diesters, pyrophosphate, and polyphosphate. We tested the hypothesis that there is a significant difference between these groups in suspended particles and sediment. Biogenic P other than orthophosphate was found in significantly higher proportions in suspended particles (74.3% of total P) than in sediment (25.6%). Orthophosphate monoesters were comparatively more abundant in suspended particles, as indicated by the ratio of orthophosphate diesters to monoesters (average, 0.31 for suspended particles; 1.05 for sediment). The compounds identified as orthophosphate monoesters by (31)P NMR spectroscopy originated mainly from phospholipids (α-glycerophosphate and β-glycerophosphate) and ribonucleic acid (RNA-P), whereas the orthophosphate diesters included mostly DNA (DNA-P). These results suggest that the dynamics of orthophosphate diesters, the production of DNA-P, or the degradation of phospholipids, play an important role in P cycling in Lake Kasumigaura.
Applied and Environmental Microbiology | 2013
Nobuyuki Kawasaki; Kazuhiro Komatsu; Ayato Kohzu; Noriko Tomioka; Ryuichiro Shinohara; Takayuki Satou; Fumiko Nara Watanabe; Yuya Tada; Koji Hamasaki; M. R. M. Kushairi; Akio Imai
ABSTRACT Incubation experiments using filtered waters from Lake Kasumigaura were conducted to examine bacterial contribution to a dissolved organic carbon (DOC) pool. Bacterial abundance, bacterial production, concentrations of DOC, total dissolved amino acids (TDAA), and total dissolved neutral sugars (TDNS) were monitored during the experiments. Bacterial production during the first few days was very high (20 to 35 μg C liter−1 day−1), accounting for 40 to 70% of primary production. The total bacterial production accounted for 34 to 55% of the DOC loss during the experiment, indicating high bacterial activities in Lake Kasumigaura. The DOC degradation was only 12 to 15%, whereas the degradation of TDAA and TDNS ranged from 30 to 50%, suggesting the preferential usage of TDAA and TDNS. The contribution of bacterially derived carbon to a DOC pool in Lake Kasumigaura was estimated using d-amino acids as bacterial biomarkers and accounted for 30 to 50% of the lake DOC. These values were much higher than those estimated for the open ocean (20 to 30%). The ratio of bacterially derived carbon to bulk carbon increased slightly with time, suggesting that the bacterially derived carbon is more resistant to microbial degradation than bulk carbon. This is the first study to estimate the bacterial contribution to a DOC pool in freshwater environments. These results indicate that bacteria play even more important roles in carbon cycles in freshwater environments than in open oceans and also suggests that recent increases in recalcitrant DOC in various lakes could be attributed to bacterially derived carbon. The potential differences in bacterial contributions to dissolved organic matter (DOM) between freshwater and marine environments are discussed.
Science of The Total Environment | 2016
Ryuichiro Shinohara; Akio Imai; Ayato Kohzu; Noriko Tomioka; Eiichi Furusato; Takayuki Satou; Tomoharu Sano; Kazuhiro Komatsu; Shingo Miura; Koichi Shimotori
We tested the hypothesis that in shallow, eutrophic Lake Kasumigaura, the concentration of particulate phosphorus (PP) is controlled by biogenic P (P in living or dead phytoplankton and bacterial cells), rather than by resuspension of inorganic P in sediment. Increases in wind velocity and turbidity were associated with bottom shear stress exceeding the critical value for the lake (τc=0.15Nm(-2)); this increased turbidity was due to sediment resuspension. However, concentrations of PP; HCl-extractable, reactive P in PP (P-rP); and HCl-extractable, non-reactive P in PP (P-nrP) were not correlated with wind velocity (PP vs. wind velocity: r=0.40, p>0.05). Rather, the P-nrP concentration accounted for approximately 79% of PP, and the concentrations of PP, P-rP, and P-nrP were correlated with the particulate organic carbon (POC) concentration (POC vs. PP: r=0.90, p<0.01; POC vs. P-rP: r=0.82, p<0.01; POC vs. P-nrP: r=0.86, p<0.01). In our (31)P nuclear magnetic resonance spectroscopy results, mononucleotides accounted for the largest proportion among the detected P compound classes. In addition, concentrations of mononucleotides, orthophosphate, and pyrophosphate were significantly higher in samples with high POC concentrations, whereas the DNA-P concentration was not. These results suggest that biogenic P affects PP concentrations more strongly than does sediment resuspension, and the production of biogenic P creates a pool of mononucleotides, a class of easily degradable P, even in shallow, eutrophic Lake Kasumigaura.
Marine Geodesy | 2014
Ariyo Kanno; Yoji Tanaka; Ryuichiro Shinohara; Akira Kurosawa; Masahiko Sekine
Although visible bands of high-resolution multispectral imagery are used for bathymetry, the relative utility of different bands is poorly understood. Therefore, we evaluated the relative utility of the six visible bands of WorldView-2. We statistically selected the visible bands that gave the best accuracy under different situations, tallying how often each band was included in the best combination. The average frequency was greater than 50% for every band and differed between bands by only 17%. We conclude that all visible bands are useful for remote sensing of water depth, although the utility depends on the image and number of training pixels available.
Environmental Science and Pollution Research | 2018
Ryuichiro Shinohara; Tomoya Iwata; Yoshiki Ikarashi; Tomoharu Sano
Particulate organic phosphorus (P) compounds were examined in ultraoligotrophic Lake Saiko, Japan. A cartridge filter was used to collect sufficient amount of suspended particles for analysis by a two-dimensional NMR (1H-31P heteronuclear multiple bond correlation). 2-Aminoethylphosphonic acid (2-AEP), a phosphonate, was detected in suspended particles in Lake Saiko. The identity of the phosphonate was confirmed by comparison with a commercially available compound. Because 2-AEP is bioavailable, microorganisms can store and use this compound under extremely P-limited conditions. This is the first study to detect 2-AEP in an ultra-oligotrophic environment.
Water Resources Research | 2017
Ryuichiro Shinohara; Mikiya Hiroki; Ayato Kohzu; Akio Imai; Tetsunori Inoue; Eiichi Furusato; Kazuhiro Komatsu; Takayuki Satou; Noriko Tomioka; Koichi Shimotori; Shingo Miura
We tested the hypothesis that mineralization of molybdenum unreactive phosphorus (MUP) in pore water is the major pathway for the changes in the concentration of molybdenum-reactive P (MRP) in pore water and inorganic P in sediment particles. The concentration of inorganic P in the sediment particles increased from December to April in Lake Kasumigaura, whereas concentrations of organic P in the sediment particles and MUP in pore water decreased. These results suggest that MUP mineralization plays a key role as the source of MRP, whereas desorption of inorganic P from the sediment particles into the pore water is a minor process. One-dimensional numerical simulation of sediment particles and the pore water supported the hypothesis. Diffusive flux of MUP was small in pore water, even in near-surface layers, so mineralization was the dominant process for changing the MUP concentration in the pore water. For MRP, diffusion was the dominant process in the surface layer, whereas adsorption onto the sediment was the dominant process in deeper layers. Researchers usually ignore organic P in the sediment, but organic P in sediment particles and the pore water is a key source of inorganic P in the sediment particles and pore water; our results suggest that in Lake Kasumigaura, organic P in the sediment is an important source, even at depths more than 1 cm below the sediment surface. In contrast, the large molecular size of MUP in pore water hampers diffusion of MUP from the sediment into the overlying water.
Limnology and Oceanography-methods | 2016
Koichi Shimotori; Takayuki Satou; Akio Imai; Nobuyuki Kawasaki; Kazuhiro Komatsu; Ayato Kohzu; Noriko Tomioka; Ryuichiro Shinohara; Shingo Miura
Limnology | 2017
Ryuichiro Shinohara; Akio Imai; Nobuyuki Kawasaki; Kazuhiro Komatsu; Ayato Kohzu; Shingo Miura; Tomoharu Sano; Takayuki Satou; Noriko Tomioka; Koichi Shimotori
Estuarine Coastal and Shelf Science | 2014
Yoji Tanaka; Ariyo Kanno; Ryuichiro Shinohara
Journal of Japan Society on Water Environment | 2017
Koichi Shimotori; Akio Imai; Ayato Kohzu; Kazuhiro Komatsu; Takayuki Satou; Noriko Tomioka; Ryuichiro Shinohara; Shingo Miura; Shinya Okui; Totsuya Kiriyama; Takahiro Okamoto