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Featured researches published by S. D. Sipes.


Nature | 2001

Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants

Kathleen M. Pryer; Harald Schneider; Alan R. Smith; Raymond Cranfill; Paul G. Wolf; Jeffrey S. Hunt; S. D. Sipes

Most of the 470-million-year history of plants on land belongs to bryophytes, pteridophytes and gymnosperms, which eventually yielded to the ecological dominance by angiosperms 90 Myr ago. Our knowledge of angiosperm phylogeny, particularly the branching order of the earliest lineages, has recently been increased by the concurrence of multigene sequence analyses. However, reconstructing relationships for all the main lineages of vascular plants that diverged since the Devonian period has remained a challenge. Here we report phylogenetic analyses of combined data—from morphology and from four genes—for 35 representatives from all the main lineages of land plants. We show that there are three monophyletic groups of extant vascular plants: (1) lycophytes, (2) seed plants and (3) a clade including equisetophytes (horsetails), psilotophytes (whisk ferns) and all eusporangiate and leptosporangiate ferns. Our maximum-likelihood analysis shows unambiguously that horsetails and ferns together are the closest relatives to seed plants. This refutes the prevailing view that horsetails and ferns are transitional evolutionary grades between bryophytes and seed plants, and has important implications for our understanding of the development and evolution of plants.


Molecular Biology and Evolution | 1999

Phylogenetic Relaitionships of the Enigmatic Fern Families Hymenophyllopsidaceae and Lophosocoriaceae: Evidence From rbcL Nucleotide Sequences

Paul G. Wolf; S. D. Sipes; Martha R. White; Michael L. Martines; Kathleen M. Pryer; Alan R. Smith; Kunihiko Ueda

Nucleotide sequences fromrbcL were used to infer relationships of Lophosoriaceae and Hymenophyllopsidaceae. The phylogenetic positions of these two monotypic fern families have been debated, and neither group had been included in recent molecular systematic studies of ferns. Maximum parsimony analysis of our data supported a sister relationship betweenLophosoria andDicksonia, and also betweenHymenophyllopsis andCyathea. Thus, both newly-examined families appear to be part of a previously characterized and well-supported clade of tree ferns. The inferred relationships ofLophosoria are consistent with most (but not all) recent treatments. However,Hymenophyllopsis includes only small delicate plants superficially similar to filmy ferns (Hymenophyllaceae), very different from the large arborescent taxa. Nevertheless, some synapomorphic characteristics are shared with the tree fern clade. Further studies on gametophytes ofHymenophyllopsis are needed to test these hypotheses of relationship.


American Journal of Botany | 1997

Clonal structure and patterns of allozyme diversity in the rare endemic Cycladenia humilis var. jonesii (Apocynaceae).

S. D. Sipes; Paul G. Wolf

The rare endemic Cycladenia humilis var. jonesii (Jones cycladenia) has low levels of sexual reproduction. Enzyme electrophoresis was used to explore possible causes of low seed set and high fruit abortion by assessing the clonal structure and genetic diversity in populations. The seven populations studied were composed of multiple, highly interdigitated clones; thus low fruit set is not likely to be due to a scarcity of mates. Genotype frequencies did not differ significantly from Hardy-Weinberg proportions, suggesting that populations are not highly inbred. Jones cycladenia exhibited high levels of genetic diversity at both the population level (A = 1.7; P = 37; He = 0.14) and the taxon level (A = 2.7; P = 60) in comparison to other plants. These data suggest that genetic drift is unlikely to have left this taxon genetically depauperate. Furthermore, we detected little divergence among geographically disjunct populations of Jones cycladenia (FST = 0.10). In comparison, Jones cycladenia populations were highly differentiated from a population of the taxons close relative, C. h. var. humilis (mean genetic identity = 0.76). Our study suggests that other reasons for low fruit set in Jones cycladenia, such as resource or pollinator limitation, or genetic load, should be explored in future research.


Molecular Ecology | 1997

Species‐independent, geographical structuring of chloroplast DNA haplotypes in a montane herb Ipomopsis (Polemoniaceae)

Paul G. Wolf; R. A. Murray; S. D. Sipes

Two hypotheses have been proposed to explain the occurrence of hybrid zones between red‐flowered Ipomopsis aggregata and white‐flowered I. tenuituba. Either local adaptation to hummingbird and hawkmoth pollinators has given rise to sympatric (or parapatric) divergence of flower colour and morphology (primary intergradation at hybrid zones), or alternatively two previously allopatric species are coming into contact at several geographical areas of secondary intergradation. We examined restriction site patterns in nuclear DNA (nrDNA), chloroplast DNA (cpDNA) and mitochondrial DNA (mtDNA) from populations of I. aggregata and I. tenuituba representing seven zones of sympatry. No variation was detected in a 350‐bp fragment of mtDNA and uninformative levels of variation were observed for nrDNA. We detected 22 potentially informative restriction site polymorphisms in cpDNA, all of which united geographical areas containing populations of both species. We detected no informative species‐specific markers. Studies of other species (e.g. oaks) have detected similar species‐independent geographical structure of cpDNA. However, in these cases secondary interegradation could be inferred from species‐specific nuclear alleles. The pattern in Ipomopsis is consistent with both primary intergradation (independent speciation in each area of sympatry) or secondary intergradation involving complete cytoplasmic replacement. Thus, additional data are needed to explain the origin of hybrid zones in Ipomopsis.


Plant Systematics and Evolution | 1999

The reproductive biology and effective pollinators of the endangered beardtongue Penstemon penlandii (Scrophulariaceae)

Vincent J. Tepedino; S. D. Sipes; Terry Griswold

Penlands beardtongue, a rare endemic plant of the Colorado Plateau, displays a mixed breeding system. Plants are partially self-compatible but set more fruits when cross-pollinated than when self-pollinated. Fruit production is significantly increased by pollinators. However, in two years of study there was no indication that fruit set was being limited by inadequate pollinator visitation. Pollinator effectiveness was judged by correlating bee behavior at the flowers with analysis of the pollen carried on bee bodies. The most important pollinators were native megachilid bees, particularly in the genusOsmia. The bees that pollinate Penlands beardtongue are essential to its reproduction and must be preserved along with this rare plant.


American Journal of Botany | 2001

Tests of pre- and postpollination barriers to hybridization between sympatric species of Ipomopsis (Polemoniaceae)

Paul G. Wolf; Diane R. Campbell; Nickolas M. Waser; S. D. Sipes; Trent R. Toler; Jenny K. Archibald

The Ipomopsis aggregata species complex (Polemoniaceae) includes species pairs that hybridize readily in nature as well as pairs that meet along contact zones with no apparent hybridization. Artificial hybrids can be made between I. aggregata and I. arizonica, yet morphological intermediates between these two species have not been observed in natural populations. This apparent lack of hybridization is perplexing given that plants of the two species often grow within a few metres of each other and both species have red flowers visited by the same species of hummingbirds. We used trained hummingbirds to examine pollen transfer within and between species. We also hand-pollinated flowers to examine paternal success of heterospecific and conspecific pollen, testing paternity with electrophoretic examination of seeds. Hummingbirds were not simply better at transferring pollen within than between species. Instead, I. arizonica was a better pollen donor so that considerable pollen transfer was observed from I. arizonica to I. aggregata, but very little in the opposite direction. Conversely, once pollen arrived at stigmas, I. arizonica pollen performed very poorly on I. aggregata pistils. However, pollen from I. aggregata could, in some cases, sire seeds on I. arizonica. We hypothesize that hybrids are scarce in nature, in part, because of asymmetric barriers to reproduction: little pollen transfer in one direction and poor pollen performance in the other.


Journal of The Torrey Botanical Society | 2006

Perfection subverted? A contrivance for outcrossing in a rare orchid is influenced by pollinator abundance1

S. D. Sipes; Vincent J. Tepedino

Abstract The combination of protandrous flowers and acropetal inflorescence development in bee-pollinated species is thought to maximize cross-pollination because bees visit vertical inflorescences from the bottom up. However, incomplete protandry may allow bees to carry out geitonogamous pollinations. We examined the overlap in male and female phases in the rare orchid Spiranthes diluvialis, a plant with the above combination of characteristics. We found that unvisited male phase flowers proceed to a hermaphroditic phase, not a female phase, because each flowers single pollinarium remains viable and may be removed by pollinators throughout anthesis. Pollinator visitation rates, as estimated by pollinaria removal rates, varied among five populations in Utah and Colorado, USA. More hermaphroditic phase flowers accrued on inflorescences in populations with low visitation rates than in those with higher visitation rates. We conclude that the cross-pollination mechanism of S. diluvialis requires some minimum threshold of bee visits in order to work optimally. When bees are plentiful, male and female functions remain temporally separated and cross-pollination is maximized. In contrast, the potential for geitonogamy in this self-compatible species is much higher in populations with low visitation rates. We suggest that pollinator abundance may affect the mating system of other protandrous, acropetal, bee-pollinated plants if protandry depends upon the timely removal of long-lived pollen.


Biological Journal of The Linnean Society | 2005

Pollen‐host specificity and evolutionary patterns of host switching in a clade of specialist bees (Apoidea: Diadasia)

S. D. Sipes; Vincent J. Tepedino


Conservation Biology | 1995

Reproductive biology of the rare orchid, Spiranthes diluvialis: Breeding system, pollination, and implications for conservation

S. D. Sipes; Vincent J. Tepedino


Molecular Phylogenetics and Evolution | 2001

Phylogenetic relationships within Diadasia, a group of specialist bees.

S. D. Sipes; Paul G. Wolf

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Alan R. Smith

University of California

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Harald Schneider

American Museum of Natural History

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Jeffrey S. Hunt

Field Museum of Natural History

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