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Dive into the research topics where S. M. Shams Kazmi is active.

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Featured researches published by S. M. Shams Kazmi.


Biomedical Optics Express | 2013

Low-cost laser speckle contrast imaging of blood flow using a webcam

Lisa M. Richards; S. M. Shams Kazmi; Janel L. Davis; Katherine E. Olin; Andrew K. Dunn

Laser speckle contrast imaging has become a widely used tool for dynamic imaging of blood flow, both in animal models and in the clinic. Typically, laser speckle contrast imaging is performed using scientific-grade instrumentation. However, due to recent advances in camera technology, these expensive components may not be necessary to produce accurate images. In this paper, we demonstrate that a consumer-grade webcam can be used to visualize changes in flow, both in a microfluidic flow phantom and in vivo in a mouse model. A two-camera setup was used to simultaneously image with a high performance monochrome CCD camera and the webcam for direct comparison. The webcam was also tested with inexpensive aspheric lenses and a laser pointer for a complete low-cost, compact setup (


Science Advances | 2017

Ultraflexible nanoelectronic probes form reliable, glial scar–free neural integration

Lan Luan; Xiaoling Wei; Zhengtuo Zhao; Jennifer J. Siegel; Ojas Potnis; Catherine A Tuppen; Shengqing Lin; S. M. Shams Kazmi; Robert A. Fowler; Stewart Holloway; Andrew K. Dunn; Raymond A. Chitwood; Chong Xie

90, 5.6 cm length, 25 g). The CCD and webcam showed excellent agreement with the two-camera setup, and the inexpensive setup was used to image dynamic blood flow changes before and after a targeted cerebral occlusion.


Biomedical Optics Express | 2010

Quantitative imaging of ischemic stroke through thinned skull in mice with Multi Exposure Speckle Imaging

Ashwin B. Parthasarathy; S. M. Shams Kazmi; Andrew K. Dunn

Subcellular-sized, ultraflexible electrodes form seamless integration with the living brain and afford chronically reliable recording. Implanted brain electrodes construct the only means to electrically interface with individual neurons in vivo, but their recording efficacy and biocompatibility pose limitations on scientific and clinical applications. We showed that nanoelectronic thread (NET) electrodes with subcellular dimensions, ultraflexibility, and cellular surgical footprints form reliable, glial scar–free neural integration. We demonstrated that NET electrodes reliably detected and tracked individual units for months; their impedance, noise level, single-unit recording yield, and the signal amplitude remained stable during long-term implantation. In vivo two-photon imaging and postmortem histological analysis revealed seamless, subcellular integration of NET probes with the local cellular and vasculature networks, featuring fully recovered capillaries with an intact blood-brain barrier and complete absence of chronic neuronal degradation and glial scar.


Journal of Biomedical Optics | 2014

Imaging depth and multiple scattering in laser speckle contrast imaging

Mitchell A. Davis; S. M. Shams Kazmi; Andrew K. Dunn

Laser Speckle Contrast Imaging (LSCI) has become a widely used technique to image cerebral blood flow in vivo. However, the quantitative accuracy of blood flow changes measured through the thin skull has not been investigated thoroughly. We recently developed a new Multi Exposure Speckle Imaging (MESI) technique to image blood flow while accounting for the effect of scattering from static tissue elements. In this paper we present the first in vivo demonstration of the MESI technique. The MESI technique was used to image the blood flow changes in a mouse cortex following photothrombotic occlusion of the middle cerebral artery. The Multi Exposure Speckle Imaging technique was found to accurately estimate flow changes due to ischemia in mice brains in vivo. These estimates of these flow changes were found to be unaffected by scattering from thinned skull.


Biomedical Optics Express | 2013

Three-dimensional mapping of oxygen tension in cortical arterioles before and after occlusion.

S. M. Shams Kazmi; Anthony Salvaggio; Arnold D. Estrada; Michael A. Hemati; Nazariy K. Shaydyuk; Emannuel Roussakis; Theresa A. Jones; Sergei A. Vinogradov; Andrew K. Dunn

Abstract. Laser speckle contrast imaging (LSCI) is a powerful and simple method for full field imaging of blood flow. However, the depth dependence and the degree of multiple scattering have not been thoroughly investigated. We employ three-dimensional Monte Carlo simulations of photon propagation combined with high resolution vascular anatomy to investigate these two issues. We found that 95% of the detected signal comes from the top 700 μm of tissue. Additionally, we observed that single-intravascular scattering is an accurate description of photon sampling dynamics, but that regions of interest (ROIs) in areas free of obvious surface vessels had fewer intravascular scattering events than ROI over resolved surface vessels. Furthermore, we observed that the local vascular anatomy can strongly affect the depth dependence of LSCI. We performed simulations over a wide range of intravascular and extravascular scattering properties to confirm the applicability of these results to LSCI imaging over a wide range of visible and near-infrared wavelengths.


Biomedical Optics Express | 2015

Flux or speed? Examining speckle contrast imaging of vascular flows.

S. M. Shams Kazmi; Ehssan Faraji; Mitchell A. Davis; Yu-Yen Huang; Xiaojing Zhang; Andrew K. Dunn

Occlusions in single cortical microvessels lead to a reduction in oxygen supply, but this decrement has not been able to be quantified in three dimensions at the level of individual vessels using a single instrument. We demonstrate a combined optical system using two-photon phosphorescence lifetime and fluorescence microscopy (2PLM) to characterize the partial pressure of oxygen (pO2) in single descending cortical arterioles in the mouse brain before and after generating a targeted photothrombotic occlusion. Integrated real-time Laser Speckle Contrast Imaging (LSCI) provides wide-field perfusion maps that are used to monitor and guide the occlusion process while 2PLM maps changes in intravascular oxygen tension. We present the technique’s utility in highlighting the effects of vascular networking on the residual intravascular oxygen tensions measured after occlusion in three dimensions.


Journal of Cerebral Blood Flow and Metabolism | 2015

Expanding applications, accuracy, and interpretation of laser speckle contrast imaging of cerebral blood flow

S. M. Shams Kazmi; Lisa M. Richards; Christian J Schrandt; Mitchell A. Davis; Andrew K. Dunn

Speckle contrast imaging enables rapid mapping of relative blood flow distributions using camera detection of back-scattered laser light. However, speckle derived flow measures deviate from direct measurements of erythrocyte speeds by 47 ± 15% (n = 13 mice) in vessels of various calibers. Alternatively, deviations with estimates of volumetric flux are on average 91 ± 43%. We highlight and attempt to alleviate this discrepancy by accounting for the effects of multiple dynamic scattering with speckle imaging of microfluidic channels of varying sizes and then with red blood cell (RBC) tracking correlated speckle imaging of vascular flows in the cerebral cortex. By revisiting the governing dynamic light scattering models, we test the ability to predict the degree of multiple dynamic scattering across vessels in order to correct for the observed discrepancies between relative RBC speeds and multi-exposure speckle imaging estimates of inverse correlation times. The analysis reveals that traditional speckle contrast imagery of vascular flows is neither a measure of volumetric flux nor particle speed, but rather the product of speed and vessel diameter. The corrected speckle estimates of the relative RBC speeds have an average 10 ± 3% deviation in vivo with those obtained from RBC tracking.


Lasers in Surgery and Medicine | 2012

Narrow band imaging of squamous cell carcinoma tumors using topically delivered anti-EGFR antibody conjugated gold nanorods†

Priyaveena Puvanakrishnan; Parmeswaran Diagaradjane; S. M. Shams Kazmi; Andrew K. Dunn; Sunil Krishnan; James W. Tunnell

Laser speckle contrast imaging (LSCI) provides a rapid characterization of cortical flow dynamics for functional monitoring of the microcirculation. The technique stems from interactions of laser light with moving particles. These interactions encode the encountered Doppler phenomena within a random interference pattern imaged in widefield, known as laser speckle. Studies of neurovascular function and coupling with LSCI have benefited from the real-time characterization of functional dynamics in the laboratory setting through quantification of perfusion dynamics. While the technique has largely been relegated to acute small animal imaging, its scalability is being assessed and characterized for both chronic and clinical neurovascular imaging.


Neurosurgery | 2012

Comparison of Indocyanine Green Angiography and Laser Speckle Contrast Imaging for the Assessment of Vasculature Perfusion

Erica L. Towle; Lisa M. Richards; S. M. Shams Kazmi; Douglas J. Fox; Andrew K. Dunn

Nanoparticles have recently gained interest as exogenous contrast agents in a variety of biomedical applications related to cancer detection and treatment. The objective of this study was to determine the potential of topically administered antibody conjugated gold nanorods (GNRs) for imaging squamous cell carcinomas (SCCs) of the skin using near‐infrared narrowband imaging (NBI). Near‐infrared (NIR) NBI images narrow wavelength bands to enhance contrast from plasmonic particles in a wide field portable and noncontact device that is clinically compatible for real‐time tumor imaging and tumor margin demarcation.


Optics Express | 2011

In vivo depth-resolved oxygen saturation by dual-wavelength photothermal (DWP) OCT

Roman V. Kuranov; S. M. Shams Kazmi; Austin McElroy; Jeffrey W. Kiel; Andrew K. Dunn; Thomas E. Milner; Timothy Q. Duong

BACKGROUND Assessment of the vasculature is critical for overall success in cranial vascular neurological surgery procedures. Although several methods of monitoring cortical perfusion intraoperatively are available, not all are appropriate or convenient in a surgical environment. Recently, 2 optical methods of care have emerged that are able to obtain high spatial resolution images with easily implemented instrumentation: indocyanine green (ICG) angiography and laser speckle contrast imaging (LSCI). OBJECTIVE To evaluate the usefulness of ICG and LSCI in measuring vessel perfusion. METHODS An experimental setup was developed that simultaneously collects measurements of ICG fluorescence and LSCI in a rodent model. A 785-nm laser diode was used for both excitation of the ICG dye and the LSCI illumination. A photothrombotic clot model was used to occlude specific vessels within the field of view to enable comparison of the 2 methods for monitoring vessel perfusion. RESULTS The induced blood flow change demonstrated that ICG is an excellent method for visualizing the volume and type of vessel at a single point in time; however, it is not always an accurate representation of blood flow. In contrast, LSCI provides a continuous and accurate measurement of blood flow changes without the need of an external contrast agent. CONCLUSION These 2 methods should be used together to obtain a complete understanding of tissue perfusion.

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Andrew K. Dunn

University of Texas at Austin

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Lisa M. Richards

University of Texas at Austin

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Mitchell A. Davis

University of Texas at Austin

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Thomas E. Milner

University of Texas at Austin

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Theresa A. Jones

University of Texas at Austin

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Adrien Ponticorvo

University of Texas at Austin

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Austin McElroy

University of Texas at Austin

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Douglas J. Fox

University of Texas at Austin

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Katherine E. Olin

University of Texas at Austin

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