Sabina Abbrent
Academy of Sciences of the Czech Republic
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Publication
Featured researches published by Sabina Abbrent.
Biomacromolecules | 2017
Jiri Brus; Martina Urbanova; Jiri Czernek; Miroslava Pavelková; Katerina Kubova; Jakub Vyslouzil; Sabina Abbrent; Rafal Konefal; Jiri Horský; David Vetchy; Jan Vysloužil; Pavel Kulich
Alginate gels are an outstanding biomaterial widely applicable in tissue engineering, medicine, and pharmacy for cell transplantation, wound healing and efficient bioactive agent delivery, respectively. This contribution provides new and comprehensive insight into the atomic-resolution structure and dynamics of polyvalent ion-cross-linked alginate gels in microbead formulations. By applying various advanced solid-state NMR (ssNMR) spectroscopy techniques, we verified the homogeneous distribution of the cross-linking ions in the alginate gels and the high degree of ion exchange. We also established that the two-component character of the alginate gels arises from the concentration fluctuations of residual water molecules that are preferentially localized along polymer chains containing abundant mannuronic acid (M) residues. These hydrated M-rich blocks tend to self-aggregate into subnanometer domains. The resulting coexistence of two types of alginate chains differing in segmental dynamics was revealed by 1H-13C dipolar profile analysis, which indicated that the average fluctuation angles of the stiff and mobile alginate segments were about 5-9° or 30°, respectively. Next, the 13C CP/MAS NMR spectra indicated that the alginate polymer microstructure was strongly dependent on the type of cross-linking ion. The polymer chain regularity was determined to systematically decrease as the cross-linking ion radius decreased. Consistent with the 1H-1H correlation spectra, regular structures were found for the gels cross-linked by relatively large alkaline earth cations (Ba2+, Sr2+, or Ca2+), whereas the alginate chains cross-linked by bivalent transition metal ions (Zn2+) and trivalent metal cations (Al3+) exhibited significant irregularities. Notably, however, the observed disordering of the alginate chains was exclusively attributed to the M residues, whereas the structurally well-defined gels all contained guluronic acid (G) residues. Therefore, a key role of the units in M-rich blocks as mediators promoting the self-assembly of alginate chains was experimentally confirmed. Finally, combining 2D 27Al 3Q/MAS NMR spectroscopy with density functional theory (DFT) calculations provided previously unreported insight into the structure of the Al3+ cross-linking centers. Notably, even with a low residual amount of water, these cross-linking units adopt exclusively 6-fold octahedral coordination and exhibit significant motion, which considerably reduces quadrupolar coupling constants. Thus, the experimental strategy presented in this study provides a new perspective on cross-linked alginate structure and dynamics for which high-quality diffraction data at the atomic resolution level are inherently unavailable.
ChemPhysChem | 2017
Libor Kobera; Jan Rohlicek; Jiri Czernek; Sabina Abbrent; Magdaléna Strečková; Tibor Sopcak; Jiri Brus
Framework materials, that is, metal-organic frameworks (MOFs) and inorganic frameworks (zeolites), are porous systems with regular structures that provide valuable properties suitable for sorption, catalysis, molecular sieving, and so on. Herein, an efficient, experimental/computational strategy is presented that allows detailed characterization of a polycrystalline MOF system, namely, zinc boron imidazolate framework ZBIF-1, with two integrated unit cells on the atomic-resolution level. Although high-resolution 1 H, 11 B, 13 C, and 15 N MAS NMR spectra provide valuable structural information on the coexistence of two distinct asymmetric units in the investigated system, an NMR crystallography approach combining X-ray powder diffraction, solid-state NMR spectroscopy, and DFT calculations allowed the exact structure of the secondary crystalline phase to be firmly defined and, furthermore, the mutual interconnectivity of the two crystalline frameworks to be resolved. Thus, this study shows the versatility and efficiency of solid-state NMR crystallography for the investigation of the wide family of MOF materials with their extensive structural complexity.
Inorganic Chemistry | 2018
Libor Kobera; Jiri Czernek; Sabina Abbrent; Hana Mackova; Lukas Pavlovec; Jan Rohlicek; Jiri Brus
Lewis acids and Lewis adducts are widely used in the chemical industry because of their high catalytic activity. Their precise geometrical description and understanding of their electronic structure are a crucial step for targeted synthesis and specific use. Herein, we present an experimental/computational strategy based on a solid-state NMR crystallographic approach allowing for detailed structural characterization of a wide range of organoaluminum compounds considerably differing in their chemical constitution. In particular, we focus on the precise measurement and subsequent quantum-chemical analysis of many different 27Al NMR resonances in the extremely broad range of quadrupolar coupling constants from 1 to 50 MHz. In this regard, we have optimized an experimental strategy combining a range of static as well as magic angle spinning experiments allowing reliable detection of the entire set of aluminum sites present in trimesitylaluminum (AlMes3) reaction products. In this way, we have spectroscopically resolved six different products in the resulting polycrystalline mixture. All 27Al NMR resonances are precisely recorded and comprehensively analyzed by a quantum-chemical approach. Interestingly, in some cases the recorded 27Al solid-state NMR spectra show unexpected quadrupolar coupling constant values reaching up to ca. 30 MHz, which are attributed to tetra-coordinated aluminum species (Lewis adducts with trigonal pyramidal geometry). The cause of this unusual behavior is explored by analyzing the natural bond orbitals and complexation energies. The linear correlation between the quadrupolar coupling constant value and the nature of bonds in the Lewis adducts is revealed. Moreover, the 27Al NMR data are shown to be sensitive to the geometry of the tetra-coordinated organoaluminum species. Our findings thus provide a viable approach for the direct identification of Lewis acids and Lewis adducts, not only in the investigated multicomponent organoaluminum compounds but also in inorganic zeolites featuring catalytically active trigonal (AlIII) and strongly perturbed AlIV sites.
Macromolecules | 2015
Libor Kobera; Jiri Czernek; Magda Strečková; Martina Urbanova; Sabina Abbrent; Jiri Brus
Polymer | 2016
Jana Kredatusová; Hynek Beneš; Sébastien Livi; Ognen Pop-Georgievski; Petra Ecorchard; Sabina Abbrent; Ewa Pavlova; Dariusz Bogdal
Crystal Growth & Design | 2016
Jiri Brus; Jiri Czernek; Libor Kobera; Martina Urbanova; Sabina Abbrent; Michal Hušák
Tetrahedron | 2018
Michal Bláha; Olga Trhlíková; Jiří Podešva; Sabina Abbrent; Milos Steinhart; Jiří Dybal; Miroslava Dušková-Smrčková
Macromolecules | 2018
Jiri Brus; Jiri Czernek; Martin Hruby; Pavel Švec; Libor Kobera; Sabina Abbrent; Martina Urbanova
Annual reports on NMR spectroscopy | 2016
Jiri Brus; Sabina Abbrent; Libor Kobera; Martina Urbanova; Pavel Čuba
Polymer | 2017
Olivia Kukackova; Nguyen Viet Dung; Sabina Abbrent; Martina Urbanova; Jiri Kotek; Jiri Brus
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University of Veterinary and Pharmaceutical Sciences Brno
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