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Dive into the research topics where Sambhunath Bera is active.

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Featured researches published by Sambhunath Bera.


Journal of Synchrotron Radiation | 2013

X-ray speckle visibility spectroscopy in the single-photon limit.

Curt DeCaro; Vidanage Nuwan Karunaratne; Sambhunath Bera; L. B. Lurio; Alec Sandy; Suresh Narayanan; M. Sutton; John Winans; Kirk L. Duffin; Jon Lehuta; Nicholas T. Karonis

The technique of speckle visibility spectroscopy has been employed for the measurement of dynamics using coherent X-ray scattering. It is shown that the X-ray contrast within a single exposure can be related to the relaxation time of the intermediate scattering function, and this methodology is applied to the diffusion of 72 nm-radius latex spheres in glycerol. Data were collected with exposure times as short as 2 ms by employing a resonant shutter. The weak scattering present for short exposures necessitated an analysis formalism based on the spatial correlation function of individual photon charge droplets on an area detector, rather than the usual methods employed for intensity correlations. It is demonstrated that this method gives good agreement between theory and experiment and thus holds promise for extending area-detector-based coherent scattering methods to the study of faster dynamics than previously obtainable.


Biophysical Journal | 2016

Cholesterol Partition and Condensing Effect in Phase-Separated Ternary Mixture Lipid Multilayers

Yicong Ma; Sajal Kumar Ghosh; David DiLena; Sambhunath Bera; L. B. Lurio; Atul N. Parikh; Sunil K. Sinha

The cholesterol partitioning and condensing effect in the liquid-ordered (Lo) and liquid-disordered (Ld) phases were systematically investigated for ternary mixture lipid multilayers consisting of 1:1 1,2-dipalmitoyl-sn-glycero-3-phosphocholine/1,2-dioleoyl-sn-glycero-3-phosphocholine with varying concentrations of cholesterol. X-ray lamellar diffraction was used to deduce the electron density profiles of each phase. The cholesterol concentration in each phase was quantified by fitting of the electron density profiles with a newly invented basic lipid profile scaling method that minimizes the number of fitting parameters. The obtained cholesterol concentration in each phase versus total cholesterol concentration in the sample increases linearly for both phases. The condensing effect of cholesterol in ternary lipid mixtures was evaluated in terms of phosphate-to-phosphate distances, which together with the estimated cholesterol concentration in each phase was converted into an average area per molecule. In addition, the cholesterol position was determined to a precision of (±0.7Å) and an increase of disorder in the lipid packing in the Lo phase was observed for total cholesterol concentration of 20∼30%.


Physical Chemistry Chemical Physics | 2015

Accurate calibration and control of relative humidity close to 100% by X-raying a DOPC multilayer.

Yicong Ma; Sajal Kumar Ghosh; Sambhunath Bera; Zhang Jiang; Stephanie Tristram-Nagle; L. B. Lurio; Sunil K. Sinha

In this study, we have designed a compact sample chamber that can achieve accurate and continuous control of the relative humidity (RH) in the vicinity of 100%. A 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) multilayer can be used as a humidity sensor by measuring its inter-layer repeat distance (d-spacing) via X-ray diffraction. We convert from DOPC d-spacing to RH according to a theory given in the literature and previously measured data of DOPC multilamellar vesicles in polyvinylpyrrolidone (PVP) solutions. This curve can be used for calibration of RH close to 100%, a regime where conventional sensors do not have sufficient accuracy. We demonstrate that this control method can provide RH accuracies of 0.1 to 0.01%, which is a factor of 10-100 improvement compared to existing methods of humidity control. Our method provides fine tuning capability of RH continuously for a single sample, whereas the PVP solution method requires new samples to be made for each PVP concentration. The use of this cell also potentially removes the need for an X-ray or neutron beam to pass through bulk water if one wishes to work close to biologically relevant conditions of nearly 100% RH.


PROCEEDINGS OF THE 12TH INTERNATIONAL CONFERENCE ON SYNCHROTRON RADIATION INSTRUMENTATION – SRI2015 | 2016

Radiation damage limits to XPCS studies of protein dynamics

Preeti Vodnala; Nuwan Karunaratne; Sambhunath Bera; L. B. Lurio; George M. Thurston; Nick Karonis; John Winans; Alec Sandy; Suresh Narayanan; Linda Yasui; Elizabeth R. Gaillard; Kalyan Karumanchi

The limitations to x-ray photon correlation spectroscopy (XPCS) imposed by radiation damage have been evaluated for suspensions of alpha crystallin. We find that the threshold for radiation damage to the measured protein diffusion rate is significantly lower than the threshold for damage to the protein structure. We provide damage thresholds beyond which the measured diffusion coeffcients have been modified using both XPCS and dynamic light scattering (DLS).


EPL | 2017

Differential adsorption of a membrane skeletal protein, spectrin, in phospholipid membranes

Rajendra P. Giri; Mrinmay K. Mukhopadhyay; Madhurima Mitra; Abhijit Chakrabarti; M. K. Sanyal; Sajal Kumar Ghosh; Sambhunath Bera; L. B. Lurio; Yicong Ma; Sunil K. Sinha


Physical Review B | 2013

Pressure-dependent phase transformation of solid helium confined within a nanoporous material

Sambhunath Bera; J. Maloney; L. B. Lurio; N. Mulders; Z. G. Cheng; M. H. W. Chan; C. A. Burns; Zhengcheng Zhang


Physical Chemistry Chemical Physics | 2016

Anomalous partitioning of water in coexisting liquid phases of lipid multilayers near 100% relative humidity

Yicong Ma; Sajal Kumar Ghosh; Sambhunath Bera; Zhang Jiang; Christian M. Schlepütz; E. Karapetrova; L. B. Lurio; Sunil K. Sinha


Bulletin of the American Physical Society | 2013

Structural studies of lipid-protein interactions on cushioned bilayers

Sajal Kumar Ghosh; Mrinmay K. Mukhopadhyay; Yicong Ma; I. Lopez; Sambhunath Bera; L. B. Lurio; Abhijit Chakrabarti; J.E. Kim; M. K. Sanyal; Sunil K. Sinha


Bulletin of the American Physical Society | 2013

X-ray reflectivity study of a DPPC floating bilayer: Effect of Ca

Sambhunath Bera; Sajal Kumar Ghosh; Yicong Ma; Curt DeCaro; Zhang Jiang; L. B. Lurio; Sunil K. Sinha


Biophysical Journal | 2013

^{2+}

Sajal Kumar Ghosh; Yicong Ma; Curt DeCaro; Sambhunath Bera; Zhang Jiang; L. B. Lurio; Sunil K. Sinha

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L. B. Lurio

Northern Illinois University

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Sunil K. Sinha

University of California

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Yicong Ma

University of California

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Zhang Jiang

Argonne National Laboratory

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Curt DeCaro

Northern Illinois University

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Alec Sandy

Argonne National Laboratory

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Suresh Narayanan

Argonne National Laboratory

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Mrinmay K. Mukhopadhyay

Saha Institute of Nuclear Physics

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Atul N. Parikh

University of California

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