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Dive into the research topics where Samuel Almeida is active.

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Featured researches published by Samuel Almeida.


Science | 2009

Drought sensitivity of the Amazon rainforest

Oliver L. Phillips; Luiz E. O. C. Aragão; Simon L. Lewis; Joshua B. Fisher; Jon Lloyd; Gabriela Lopez-Gonzalez; Yadvinder Malhi; Abel Monteagudo; J. Peacock; Carlos A. Quesada; Geertje M.F. van der Heijden; Samuel Almeida; Iêda Leão do Amaral; Luzmila Arroyo; Gerardo Aymard; Timothy R. Baker; Olaf Banki; Lilian Blanc; Damien Bonal; Paulo M. Brando; Jérôme Chave; Atila Alves de Oliveira; Nallaret Dávila Cardozo; Claudia I. Czimczik; Ted R. Feldpausch; Maria Aparecida Freitas; Emanuel Gloor; Niro Higuchi; Eliana M. Jimenez; Gareth Lloyd

Amazon forests are a key but poorly understood component of the global carbon cycle. If, as anticipated, they dry this century, they might accelerate climate change through carbon losses and changed surface energy balances. We used records from multiple long-term monitoring plots across Amazonia to assess forest responses to the intense 2005 drought, a possible analog of future events. Affected forest lost biomass, reversing a large long-term carbon sink, with the greatest impacts observed where the dry season was unusually intense. Relative to pre-2005 conditions, forest subjected to a 100-millimeter increase in water deficit lost 5.3 megagrams of aboveground biomass of carbon per hectare. The drought had a total biomass carbon impact of 1.2 to 1.6 petagrams (1.2 × 1015 to 1.6 × 1015 grams). Amazon forests therefore appear vulnerable to increasing moisture stress, with the potential for large carbon losses to exert feedback on climate change.


New Phytologist | 2010

Drought–mortality relationships for tropical forests

Oliver L. Phillips; Geertje M.F. van der Heijden; Simon L. Lewis; Gabriela Lopez-Gonzalez; Luiz E. O. C. Aragão; Jon Lloyd; Yadvinder Malhi; Abel Monteagudo; Samuel Almeida; Esteban Álvarez Dávila; Iêda Leão do Amaral; Sandy Andelman; Ana Andrade; Luzmila Arroyo; Gerardo Aymard; Timothy R. Baker; Lilian Blanc; Damien Bonal; Atila Alves de Oliveira; Kuo-Jung Chao; Nallaret Dávila Cardozo; Lola Da Costa; Ted R. Feldpausch; Joshua B. Fisher; Nikolaos M. Fyllas; Maria Aparecida Freitas; David Galbraith; Emanuel Gloor; Niro Higuchi; Eurídice N. Honorio

*The rich ecology of tropical forests is intimately tied to their moisture status. Multi-site syntheses can provide a macro-scale view of these linkages and their susceptibility to changing climates. Here, we report pan-tropical and regional-scale analyses of tree vulnerability to drought. *We assembled available data on tropical forest tree stem mortality before, during, and after recent drought events, from 119 monitoring plots in 10 countries concentrated in Amazonia and Borneo. *In most sites, larger trees are disproportionately at risk. At least within Amazonia, low wood density trees are also at greater risk of drought-associated mortality, independent of size. For comparable drought intensities, trees in Borneo are more vulnerable than trees in the Amazon. There is some evidence for lagged impacts of drought, with mortality rates remaining elevated 2 yr after the meteorological event is over. *These findings indicate that repeated droughts would shift the functional composition of tropical forests toward smaller, denser-wooded trees. At very high drought intensities, the linear relationship between tree mortality and moisture stress apparently breaks down, suggesting the existence of moisture stress thresholds beyond which some tropical forests would suffer catastrophic tree mortality.


Journal of Vegetation Science | 2002

An international network to monitor the structure, composition and dynamics of Amazonian forests (RAINFOR)

Yadvinder Malhi; Oliver L. Phillips; Jon Lloyd; Timothy R. Baker; James Wright; Samuel Almeida; L. Arroyo; T. Frederiksen; John Grace; Niro Higuchi; Timothy J. Killeen; William F. Laurance; C. Leaño; Simon L. Lewis; Patrick Meir; Abel Monteagudo; David A. Neill; P. Núñez Vargas; S.N. Panfil; S. Patiño; Nigel C. A. Pitman; Carlos A. Quesada; A. Rudas-Ll.; Rafael de Paiva Salomão; Scott R. Saleska; Natalino Silva; M. Silveira; W.G. Sombroek; Renato Valencia; R. Vásquez Martínez

Abstract The Amazon basin is likely to be increasingly affected by environmental changes: higher temperatures, changes in precipitation, CO2 fertilization and habitat fragmentation. To examine the important ecological and biogeochemical consequences of these changes, we are developing an international network, RAINFOR, which aims to monitor forest biomass and dynamics across Amazonia in a co-ordinated fashion in order to understand their relationship to soil and climate. The network will focus on sample plots established by independent researchers, some providing data extending back several decades. We will also conduct rapid transect studies of poorly monitored regions. Field expeditions analysed local soil and plant properties in the first phase (2001–2002). Initial results suggest that the network has the potential to reveal much information on the continental-scale relations between forest and environment. The network will also serve as a forum for discussion between researchers, with the aim of standardising sampling techniques and methodologies that will enable Amazonian forests to be monitored in a coherent manner in the coming decades. Abbreviation: PSP = Permanent sample plot.


New Phytologist | 2010

Effect of 7 yr of experimental drought on vegetation dynamics and biomass storage of an eastern Amazonian rainforest

Antonio Carlos Lola da Costa; David Galbraith; Samuel Almeida; Bruno Takeshi Tanaka Portela; Mauricio da Costa; João de Athaydes Silva Junior; Alan Pantoja Braga; Paulo H. L. Gonçalves; Alex A. R. Oliveira; Rosie A. Fisher; Oliver L. Phillips; Daniel B. Metcalfe; Peter E. Levy; Patrick Meir

*At least one climate model predicts severe reductions of rainfall over Amazonia during this century. Long-term throughfall exclusion (TFE) experiments represent the best available means to investigate the resilience of the Amazon rainforest to such droughts. *Results are presented from a 7 yr TFE study at Caxiuanã National Forest, eastern Amazonia. We focus on the impacts of the drought on tree mortality, wood production and above-ground biomass. *Tree mortality in the TFE plot over the experimental period was 2.5% yr(-1), compared with 1.25% yr(-1) in a nearby control plot experiencing normal rainfall. Differences in stem mortality between plots were greatest in the largest (> 40 cm diameter at breast height (dbh)) size class (4.1% yr(-1) in the TFE and 1.4% yr(-1) in the control). Wood production in the TFE plot was c. 30% lower than in the control plot. Together, these changes resulted in a loss of 37.8 +/- 2.0 Mg carbon (C) ha(-1) in the TFE plot (2002-2008), compared with no change in the control. *These results are remarkably consistent with those from another TFE (at Tapajós National Forest), suggesting that eastern Amazonian forests may respond to prolonged drought in a predictable manner.


New Phytologist | 2013

Confronting model predictions of carbon fluxes with measurements of Amazon forests subjected to experimental drought

Thomas L. Powell; David Galbraith; Bradley Christoffersen; Anna B. Harper; Hewlley Maria Acioli Imbuzeiro; Lucy Rowland; Samuel Almeida; Paulo M. Brando; Antonio Carlos Lola da Costa; Marcos Heil Costa; Naomi M. Levine; Yadvinder Malhi; Scott R. Saleska; Eleneide Doff Sotta; Mathew Williams; Patrick Meir; Paul R. Moorcroft

Considerable uncertainty surrounds the fate of Amazon rainforests in response to climate change. Here, carbon (C) flux predictions of five terrestrial biosphere models (Community Land Model version 3.5 (CLM3.5), Ecosystem Demography model version 2.1 (ED2), Integrated BIosphere Simulator version 2.6.4 (IBIS), Joint UK Land Environment Simulator version 2.1 (JULES) and Simple Biosphere model version 3 (SiB3)) and a hydrodynamic terrestrial ecosystem model (the Soil-Plant-Atmosphere (SPA) model) were evaluated against measurements from two large-scale Amazon drought experiments. Model predictions agreed with the observed C fluxes in the control plots of both experiments, but poorly replicated the responses to the drought treatments. Most notably, with the exception of ED2, the models predicted negligible reductions in aboveground biomass in response to the drought treatments, which was in contrast to an observed c. 20% reduction at both sites. For ED2, the timing of the decline in aboveground biomass was accurate, but the magnitude was too high for one site and too low for the other. Three key findings indicate critical areas for future research and model development. First, the models predicted declines in autotrophic respiration under prolonged drought in contrast to measured increases at one of the sites. Secondly, models lacking a phenological response to drought introduced bias in the sensitivity of canopy productivity and respiration to drought. Thirdly, the phenomenological water-stress functions used by the terrestrial biosphere models to represent the effects of soil moisture on stomatal conductance yielded unrealistic diurnal and seasonal responses to drought.


Philosophical Transactions of the Royal Society B | 2011

Variations in Amazon forest productivity correlated with foliar nutrients and modelled rates of photosynthetic carbon supply

Lina M. Mercado; S. Patiño; Tomas F. Domingues; Nikolaos M. Fyllas; Graham P. Weedon; Stephen Sitch; Carlos A. Quesada; Oliver L. Phillips; Luiz E. O. C. Aragão; Yadvinder Malhi; A. J. Dolman; Natalia Restrepo-Coupe; Scott R. Saleska; Timothy R. Baker; Samuel Almeida; Niro Higuchi; Jon Lloyd

The rate of above-ground woody biomass production, WP, in some western Amazon forests exceeds those in the east by a factor of 2 or more. Underlying causes may include climate, soil nutrient limitations and species composition. In this modelling paper, we explore the implications of allowing key nutrients such as N and P to constrain the photosynthesis of Amazon forests, and also we examine the relationship between modelled rates of photosynthesis and the observed gradients in WP. We use a model with current understanding of the underpinning biochemical processes as affected by nutrient availability to assess: (i) the degree to which observed spatial variations in foliar [N] and [P] across Amazonia affect stand-level photosynthesis; and (ii) how these variations in forest photosynthetic carbon acquisition relate to the observed geographical patterns of stem growth across the Amazon Basin. We find nutrient availability to exert a strong effect on photosynthetic carbon gain across the Basin and to be a likely important contributor to the observed gradient in WP. Phosphorus emerges as more important than nitrogen in accounting for the observed variations in productivity. Implications of these findings are discussed in the context of future tropical forests under a changing climate.


Plant Ecology & Diversity | 2014

The production, allocation and cycling of carbon in a forest on fertile terra preta soil in eastern Amazonia compared with a forest on adjacent infertile soil

Christopher E. Doughty; Daniel B. Metcalfe; Mauricio da Costa; Alex A. R. Oliveira; G. F.C. Neto; João A. Silva; Luiz E. O. C. Aragão; Samuel Almeida; Carlos A. Quesada; Cécile A. J. Girardin; Kate Halladay; Anthonio C.L. da Costa; Yadvinder Malhi

Background: Terra preta do indio or ‘dark earth’ soils formed as a result of a long-term addition of organic matter by indigenous peoples in Amazonia. Aims: Here we report on the first study of productivity, allocation and carbon cycling from a terra preta plot in eastern Amazonia (Caxiuanã, Pará, Brazil), and contrast its dynamics with a nearby plot on infertile soil (ferralsols). Methods: We determined total net primary production (NPP) for fine roots, wood, and canopy and total autotrophic respiration (rhizosphere, wood, and canopy respiration) from two 1-ha plots on contrasting soils. Results: Both gross primary productivity (GPP) (35.68 ± 3.65 vs. 32.08 ± 3.46 Mg C ha−1 year−1) and carbon use efficiency (CUE) (0.44 ± 0.06 vs. 0.42 ± 0.05) were slightly higher at the terra preta plot. Total NPP (15.77 ± 1.13 Mg C ha−1 year−1 vs. 13.57 ± 0.60 Mg C ha−1 year−1) and rates of fine root production (6.41 ± 1.08 vs. 3.68 ± 0.52 Mg C ha−1 year−1) were also greater at the terra preta plot vs. the tower plot. Conclusions: Forests on terra preta soil fix slightly more carbon and allocate slightly more of that carbon towards growth than forests on the infertile plot, which leads to greater total NPP, which was disproportionately allocated to fine roots. However, since increased fine root NPP was partially offset by increased heterotrophic soil respiration, the increased root growth was unlikely to greatly enhance soil carbon stocks in terra preta soils.


Acta Amazonica | 2004

Análise florística e estrutura de florestas de várzea no estuário amazônico

Samuel Almeida; Dário Dantas do Amaral; Antonio Sérgio Lima da Silva

Este trabalho apresenta os resultados de analise fitossociologica e da estrutura, feita em 4 inventarios floristicos executados em parcelas de 1 hectare de florestas inundaveis de varzea localizadas na area do estuario e do baixo Amazonas. As florestas de varzea do estuario albergam uma riqueza de especies relativamente baixa em relacao a outras areas da regiao como as florestas de terra firme. No entanto a estrutura de tamanho e consideravel, com as arvores atingindo elevada biomassa vegetal. Provavelmente isto e devido ao aporte constante de nutrientes atraves dos sedimentos que viajam milhares de quilometros de distância desde as nascentes andinas ate o delta do rio Amazonas. As florestas inundaveis de varzea sao dominadas por poucas especies, algumas com muitos individuos, como o acai (Euterpe oleracea) e o muru-muru (Astrocaryum murumuru), outras com arvores muito grandes como a pitaica (Swartzia polyphylla), pracuuba (Mora paraensis) e a seringueira (Hevea brasiliensis). A ucuuba (Virola surinamensis), uma especie que apresenta populacoes ameacadas pela exploracao madeireira, parece apresentar tanto individuos grandes como elevada densidade. As florestas de varzea apresentam baixa similaridade entre si, provavelmente decorrente da imensa variacao do ambiente de varzea nos rios, paranas, ilhas e lagos, como os efeitos de zonacao, altura de inundacao, salinidade, velocidade da agua, entre outros fatores. Estrategias de selecao de areas de varzea para conservacao devem levar em conta a variacao ambiental, o grau de interferencia humana e a diversidade local e entre ambientes.


Plant Ecology & Diversity | 2014

Ecosystem respiration and net primary productivity after 8–10 years of experimental through-fall reduction in an eastern Amazon forest

Antonio Carlos Lola da Costa; Daniel B. Metcalfe; Christopher E. Doughty; Alexandre A.R. de Oliveira; Guilherme F.C. Neto; Mauricio da Costa; João de Athaydes Silva Junior; Luiz E. O. C. Aragão; Samuel Almeida; David Galbraith; Lucy Rowland; Patrick Meir; Yadvinder Malhi

Background: There is much interest in how the Amazon rainforest may respond to future rainfall reduction. However, there are relatively few ecosystem-scale studies to inform this debate. Aims: We described the carbon cycle in a 1 ha rainforest plot subjected to 8–10 consecutive years of ca. 50% through-fall reduction (TFR) and compare these results with those from a nearby, unmodified control plot in eastern Amazonia. Methods: We quantified the components of net primary productivity (NPP), autotrophic (R a) and heterotrophic respiration, and estimate gross primary productivity (GPP, the sum of NPP and R a) and carbon-use efficiency (CUE, the ratio of NPP/GPP). Results: The TFR forest exhibited slightly lower NPP but slightly higher R a, such that forest CUE was 0.29 ± 0.04 on the control plot but 0.25 ± 0.03 on the TFR plot. Compared with four years earlier, TFR plot leaf area index and small tree growth recovered and soil heterotrophic respiration had risen. Conclusions: This analysis tested and extended the key findings of a similar analysis 4 years earlier in the TFR treatment. The results indicated that, while the forest recovered from extended drought in some respects, it maintained higher overall R a relative to the undroughted control, potentially causing the droughted forest to act as a net source of CO2.


Folia Geobotanica | 2004

Tree species distribution in várzea forests of Brazilian Amazonia

Pia Parolin; Leandro V. Ferreira; Ana L. K. Ml Albernaz; Samuel Almeida

Amazonian várzea forests are floodplains inundated by nutrient-rich white-water rivers occurring along the Amazon River. They are regularly flooded for up to 210 days per year by water columns of 10–15 m. Topographic variation results in different flooding amplitudes and durations along the flooding gradient, where the different tolerance to flooding of different plant species results in a vegetation zonation. We made a review of literature about the vegetation composition ofvárzea floodplain forests of Brazilian Amazonia along the Amazon River. Twenty-two studies were selected. Basing on the distribution of inventories which are concentrated in three main areas around the three larger cities Belém, Manaus and Tefé, we classified the inventories into three regions: (A) Estuary region with flooding regime influenced by daily inundations linked to the tides; (B) Central Amazonia near Manaus; (C) Western part of Brazilian Amazonia bordering Peru and Colombia, including Tefé and the “Reserva de Desenvolvimento Sustentável Mamirauá”. Summarizing the analyzed species lists, 36 tree species were registered in all sampled regions including the estuary. The regions A +C have 63 species in common, region B+C 143, and A+B 50. In the inventories analyzed here, an increase in species numbers from East to West can be confirmed, but it is difficult to state whether this is not an artefact due to local sampling. Vertical zonation patterns are difficult to discuss due to the lack of comparable data. The inventoried areas are small, and there is an urgent need for comparable floristic inventories throughout the basin. Destruction is spreading rapidly and the traditional use of forests and its resources is changing to a destructive exploitation that already has changed much of the physiognomy and diversity of this unique ecosystem.

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Luiz E. O. C. Aragão

National Institute for Space Research

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Abel Monteagudo

Missouri Botanical Garden

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David A. Neill

Missouri Botanical Garden

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Patrick Meir

University of Edinburgh

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