Scott C. Brooks

Mercury and other heavy metals influence bacterial community structure in contaminated Tennessee streams

ABSTRACT High concentrations of uranium, inorganic mercury [Hg(II)], and methylmercury (MeHg) have been detected in streams located in the Department of Energy reservation in Oak Ridge, TN. To determine the potential effects of the surface water contamination on the microbial community composition, surface stream sediments were collected 7 times during the year, from 5 contaminated locations and 1 control stream. Fifty-nine samples were analyzed for bacterial community composition and geochemistry. Community characterization was based on GS 454 FLX pyrosequencing with 235 Mb of 16S rRNA gene sequence targeting the V4 region. Sorting and filtering of the raw reads resulted in 588,699 high-quality sequences with lengths of >200 bp. The bacterial community consisted of 23 phyla, including Proteobacteria (ranging from 22.9 to 58.5% per sample), Cyanobacteria (0.2 to 32.0%), Acidobacteria (1.6 to 30.6%), Verrucomicrobia (3.4 to 31.0%), and unclassified bacteria. Redundancy analysis indicated no significant differences in the bacterial community structure between midchannel and near-bank samples. Significant correlations were found between the bacterial community and seasonal as well as geochemical factors. Furthermore, several community members within the Proteobacteria group that includes sulfate-reducing bacteria and within the Verrucomicrobia group appeared to be associated positively with Hg and MeHg. This study is the first to indicate an influence of MeHg on the in situ microbial community and suggests possible roles of these bacteria in the Hg/MeHg cycle.

Kinetic controls on the complexation between mercury and dissolved organic matter in a contaminated environment.

The interaction of mercury (Hg) with dissolved natural organic matter (NOM) under equilibrium conditions is the focus of many studies but the kinetic controls on Hg-NOM complexation in aquatic systems have often been overlooked. We examined the rates of Hg-NOM complexation both in a contaminated Upper East Fork Poplar Creek (UEFPC) in Oak Ridge, Tennessee, and in controlled laboratory experiments using reducible Hg (Hg(R)) measurements and C(18) solid phase extraction techniques. Of the filterable Hg at the headwaters of UEFPC, >90% was present as Hg(R) and this fraction decreased downstream but remained >29% of the filterable Hg at all sites. The presence of higher Hg(R) concentrations than would be predicted under equilibrium conditions in UEFPC and in experiments with a NOM isolate suggests that kinetic reactions are controlling the complexation between Hg and NOM. The slow formation of Hg-NOM complexes is attributed to competitive ligand exchange among various moieties and functional groups in NOM with a range of binding strengths and configurations. This study demonstrates the need to consider the effects of Hg-NOM complexation kinetics on processes such as Hg methylation and solid phase partitioning.

Transport and biogeochemical reaction of metals in a physically and chemically heterogeneous aquifer

Biologically mediated reductive dissolution and precipitation of metals and radionuclides play key roles in their subsurface transport. Physical and chemical properties of natural aquifer systems, such as reactive iron-oxide surface area and hydraulic conductivity, are often highly heterogeneous in complex ways that can exert significant control on transport, natural attenuation, and active remediation processes. Typically, however, few data on the detailed distribution of these properties are available for incorporation into predictive models. In this study, we integrate field-scale geophysical, hydrologic, and geochemical data from a well-characterized site with the results of laboratory batch-reaction studies to formulate two-dimensional numerical models of reactive transport in a heterogeneous granular aquifer. The models incorporate several levels of coupling, including effects of ferrous iron sorption onto (and associated reduction of reactive surface area of) ferric iron surfaces, microbial growth and transport dynamics, and cross-correlation between hydraulic conductivity and initial ferric iron surface area. These models are then used to evaluate the impacts of physical and chemical heterogeneity on transport of trace levels of uranium under natural conditions, as well as the effectiveness of uranium reduction and immobilization upon introduction of a soluble electron donor (a potential biostimulation remedial strategy).

Denitrifying Bacteria from the Genus Rhodanobacter Dominate Bacterial Communities in the Highly Contaminated Subsurface of a Nuclear Legacy Waste Site

ABSTRACT The effect of long-term mixed-waste contamination, particularly uranium and nitrate, on the microbial community in the terrestrial subsurface was investigated at the field scale at the Oak Ridge Integrated Field Research Challenge (ORIFRC) site in Oak Ridge, TN. The abundance, community composition, and distribution of groundwater microorganisms were examined across the site during two seasonal sampling events. At representative locations, subsurface sediment was also examined from two boreholes, one sampled from the most heavily contaminated area of the site and another from an area with low contamination. A suite of DNA- and RNA-based molecular tools were employed for community characterization, including quantitative PCR of rRNA and nitrite reductase genes, community composition fingerprinting analysis, and high-throughput pyrotag sequencing of rRNA genes. The results demonstrate that pH is a major driver of the subsurface microbial community structure and that denitrifying bacteria from the genus Rhodanobacter (class Gammaproteobacteria) dominate at low pH. The relative abundance of bacteria from this genus was positively correlated with lower-pH conditions, and these bacteria were abundant and active in the most highly contaminated areas. Other factors, such as the concentration of nitrogen species, oxygen level, and sampling season, did not appear to strongly influence the distribution of Rhodanobacter bacteria. The results indicate that these organisms are acid-tolerant denitrifiers, well suited to the acidic, nitrate-rich subsurface conditions, and pH is confirmed as a dominant driver of bacterial community structure in this contaminated subsurface environment.

Factors Controlling the Bioaccessibility of Arsenic(V) and Lead(II) in Soil

The relative oral bioaccessibility of labile Pb(II) and As(V) added to soils was investigated in a well-characterized soil using a physiologically based extraction test (PBET) to simulate metal solubility in a childs digestive system. The effect of soil and PBET (i.e., simulated stomach and small intestine) pH, soil metal concentration, soil to solution ratio, and soil-metal aging time were investigated. Arsenic bioaccessibility was relatively unaffected by a variation in simulated stomach and small intestine pH over the range 2 to 7 and soil pH over the range 4.5 to 9.4. In contrast, Pb(II) bioaccessibility was strongly dependent on both the simulated stomach, small intestine, and soil pH, showing enhanced sequestration and decreased bioaccessibility at higher pH values in all cases. Although the bioaccessibility of Pb(II) was constant over the concentration range of approximately 10 to 10,000 mg/kg, the As(V) bioaccessibility significantly increased over this concentration range. The bioaccessibility of both arsenic and lead increased as the soil-to-solution ratio decreased from 1:40 to 1:100. Additional lead sequestration was not observed during 6 months of soil aging, but As(V) bioaccessibility decreased significantly during this period.

A Limited Microbial Consortium Is Responsible for Extended Bioreduction of Uranium in a Contaminated Aquifer

ABSTRACT Subsurface amendments of slow-release substrates (e.g., emulsified vegetable oil [EVO]) are thought to be a pragmatic alternative to using short-lived, labile substrates for sustained uranium bioimmobilization within contaminated groundwater systems. Spatial and temporal dynamics of subsurface microbial communities during EVO amendment are unknown and likely differ significantly from those of populations stimulated by soluble substrates, such as ethanol and acetate. In this study, a one-time EVO injection resulted in decreased groundwater U concentrations that remained below initial levels for approximately 4 months. Pyrosequencing and quantitative PCR of 16S rRNA from monitoring well samples revealed a rapid decline in groundwater bacterial community richness and diversity after EVO injection, concurrent with increased 16S rRNA copy levels, indicating the selection of a narrow group of taxa rather than a broad community stimulation. Members of the Firmicutes family Veillonellaceae dominated after injection and most likely catalyzed the initial oil decomposition. Sulfate-reducing bacteria from the genus Desulforegula, known for long-chain fatty acid oxidation to acetate, also dominated after EVO amendment. Acetate and H2 production during EVO degradation appeared to stimulate NO3 −, Fe(III), U(VI), and SO4 2− reduction by members of the Comamonadaceae, Geobacteriaceae, and Desulfobacterales. Methanogenic archaea flourished late to comprise over 25% of the total microbial community. Bacterial diversity rebounded after 9 months, although community compositions remained distinct from the preamendment conditions. These results demonstrated that a one-time EVO amendment served as an effective electron donor source for in situ U(VI) bioreduction and that subsurface EVO degradation and metal reduction were likely mediated by successive identifiable guilds of organisms.

In Situ Bioremediation of Uranium with Emulsified Vegetable Oil as the Electron Donor

A field test with a one-time emulsified vegetable oil (EVO) injection was conducted to assess the capacity of EVO to sustain uranium bioreduction in a high-permeability gravel layer with groundwater concentrations of (mM) U, 0.0055; Ca, 2.98; NO3(-), 0.11; HCO3(-), 5.07; and SO4(2-), 1.23. Comparison of bromide and EVO migration and distribution indicated that a majority of the injected EVO was retained in the subsurface from the injection wells to 50 m downgradient. Nitrate, uranium, and sulfate were sequentially removed from the groundwater within 1-2 weeks, accompanied by an increase in acetate, Mn, Fe, and methane concentrations. Due to the slow release and degradation of EVO with time, reducing conditions were sustained for approximately one year, and daily U discharge to a creek, located approximately 50 m from the injection wells, decreased by 80% within 100 days. Total U discharge was reduced by 50% over the one-year period. Reduction of U(VI) to U(IV) was confirmed by synchrotron analysis of recovered aquifer solids. Oxidants (e.g., dissolved oxygen, nitrate) flowing in from upgradient appeared to reoxidize and remobilize uranium after the EVO was exhausted as evidenced by a transient increase of U concentration above ambient values. Occasional (e.g., annual) EVO injection into a permeable Ca and bicarbonate-containing aquifer can sustain uranium bioreduction/immobilization and decrease U migration/discharge.

History of mercury use and environmental contamination at the Oak Ridge Y-12 Plant.

Between 1950 and 1963 approximately 11 million kilograms of mercury (Hg) were used at the Oak Ridge Y-12 National Security Complex (Y-12 NSC) for lithium isotope separation processes. About 3% of the Hg was lost to the air, soil and rock under facilities, and East Fork Poplar Creek (EFPC) which originates in the plant site. Smaller amounts of Hg were used at other Oak Ridge facilities with similar results. Although the primary Hg discharges from Y-12 NSC stopped in 1963, small amounts of Hg continue to be released into the creek from point sources and diffuse contaminated soil and groundwater sources within Y-12 NSC. Mercury concentration in EFPC has decreased 85% from ∼2000 ng/L in the 1980s. In general, methylmercury concentrations in water and in fish have not declined in response to improvements in water quality and exhibit trends of increasing concentration in some cases.

Chromium transport, oxidation, and adsorption in manganese-coated sand.

We examine how the processes of advection, dispersion, oxidation-reduction, and adsorption combine to affect the transport of chromium through columns packed with pyrolusite (beta-MnO2)-coated sand. We find that beta-MnO2 effectively oxidizes Cr(III) to Cr(VI) and that the extent of oxidation is sensitive to changes in pH, pore water velocity, and influent concentrations of Cr(III). Cr(III) oxidation rates, although initially high, decline well before the supply of beta-MnO2 is depleted, suggesting that a reaction product inhibits the conversion of Cr(III) to Cr(VI). Rate-limited reactions govern the weak adsorption of each chromium species, with Cr(III) adsorption varying directly with pH and Cr(VI) adsorption varying inversely with pH. The breakthrough data on chromium transport can be matched closely by calculations of a simple model that accounts for (1) advective-dispersive transport of Cr(III), Cr(VI), and dissolved oxygen, (2) first-order kinetics adsorption of the reduced and oxidized chromium species, and (3) nonlinear rate-limited oxidation of Cr(III) to Cr(VI). Our work supplements the limited database on the transport of redox-sensitive metals in porous media and provides a means for quantifying the coupled processes that contribute to this transport.

Reactive transport of EDTA-complexed cobalt in the presence of ferrihydrite

Abstract Many low-level radioactive wastes, historically disposed in shallow land trenches, are illdefined mixtures of radionuclides and organic chelating agents. The observed migration of nuclides, such as 60 Co, away from burial sites has been attributed, in part, to the formation of aqueous complexes with ethylenediaminetetraacetic acid (EDTA). The stability of Co-EDTA complexes, and thus the fate and transport: of 60 Co in the subsurface, is strongly dependent on the oxidation state of cobalt (log K co(II)EDTA = 18.3; log K Co(III)EDTA = 43.9). The factors that control the oxidation of Co(II) to Co(III) in subsurface environments are not well understood. We conducted a series of column flow experiments to provide an improved understanding of the geochemical processes that control the reactive transport of cobalt in the subsurface. A solution of 0.2 mM Co(II)EDTA 2− in 5 mM CaCl 2 was passed through saturated columns that were packed with ferrihydrite (Fe(OH) 3 )-coated Si0 2 . During transport through the column, a portion of the Co (II) EDTA 2− was oxidized to Co (III) EDTA − ; the amount of oxidation reached a steady-state under oxic conditions. Transport of the oxidized species, Co(III)EDTA − , was substantially more rapid than the transport of Co(II) EDTA 2− . The retardation of both Co-EDTA species and the extent of cobalt oxidation increased as the pH decreased. These results are consistent with the hypothesis that the association of Co(H)EDTA 2− with the ferrihydrite surface is essential for the charge-transfer involved in the oxidation reaction. Co(III)EDTA- exhibited less retardation because this monovalent anion had a lower affinity for the surface than the divalent Co(II)EDTA 2− . At faster flow rate, the retardation of Co(II)EDTA 2− decreased whereas Co (III) EDTA — breakthrough occurred later; the amount of Co(III)EDTA − formed decreased with increasing flow rate. Under anoxic conditions, the oxidation of Co(II)EDTA 2− was decreased, but was not eliminated, suggesting that ferric iron may serve as an oxidant in the system. The loss of oxidative sites under continuous exposure to Co(II)EDTP 2− and the blocking of oxidative sites by ions residing on the ferrihydrite surface resulted in a slow decline in the amount of oxidation under anoxic conditions. The oxidation of Co(II)EDTA 2− effectively competed with other geochemical reactions such as the Fe(III)-induced dissociation of Co(II)EDTA 2− complexes under oxic and anoxic conditions. These results indicate that an iron mineral can be more important for the formation of Co(III)EDTA 2− in the subsurface than the mineral is important for the dissociation of Co(II)EDTA − and the concomitant formation of Fe(III)EDTA − . The results suggest that conditions of pH and flow rate that inhibit the formation of the very stable Co(III)EDTA − also promote the undesirable rapid transport of Co(II)EDTA 2− posing a challenge to the selection of future waste sites and the development of remedial strategies for existing sites impacted by EDTA-complexed 60 Co.