Scott McIntyre

High magnetic field water and metabolite proton T1 and T2 relaxation in rat brain in vivo

Comprehensive and quantitative measurements of T1 and T2 relaxation times of water, metabolites, and macromolecules in rat brain under similar experimental conditions at three high magnetic field strengths (4.0 T, 9.4 T, and 11.7 T) are presented. Water relaxation showed a highly significant increase (T1) and decrease (T2) with increasing field strength for all nine analyzed brain structures. Similar but less pronounced effects were observed for all metabolites. Macromolecules displayed field‐independent T2 relaxation and a strong increase of T1 with field strength. Among other features, these data show that while spectral resolution continues to increase with field strength, the absolute signal‐to‐noise ratio (SNR) in T1/T2‐based anatomical MRI quickly levels off beyond ∼7 T and may actually decrease at higher magnetic fields. Magn Reson Med, 2006.

Dynamic multi-coil shimming of the human brain at 7 T.

High quality magnetic field homogenization of the human brain (i.e. shimming) for MR imaging and spectroscopy is a demanding task. The susceptibility differences between air and tissue are a longstanding problem as they induce complex field distortions in the prefrontal cortex and the temporal lobes. To date, the theoretical gains of high field MR have only been realized partially in the human brain due to limited magnetic field homogeneity. A novel shimming technique for the human brain is presented that is based on the combination of non-orthogonal basis fields from 48 individual, circular coils. Custom-built amplifier electronics enabled the dynamic application of the multi-coil shim fields in a slice-specific fashion. Dynamic multi-coil (DMC) shimming is shown to eliminate most of the magnetic field inhomogeneity apparent in the human brain at 7 T and provided improved performance compared to state-of-the-art dynamic shim updating with zero through third order spherical harmonic functions. The novel technique paves the way for high field MR applications of the human brain for which excellent magnetic field homogeneity is a prerequisite.

Dynamic shim updating (DSU) for multislice signal acquisition.

Dynamic shim updating (DSU) is a technique for achieving optimal magnetic field homogeneity over extended volumes by dynamically updating an optimal shim setting for each individual slice in a multislice acquisition protocol. Here the practical implementation of DSU using all first‐ and second‐order shims is described. In particular, the hardware modifications and software requirements are demonstrated. Furthermore, the temporal effects of dynamically switching shim currents are investigated and a Z2‐to‐Z0 compensation unit is described and implemented to counteract the temporal Z0 variations following a change in the Z2 shim current. The optimal shim settings for all slices are determined with a quantitative and user‐independent, multislice phase‐mapping sequence. The performance of DSU is evaluated from multislice phase maps and spectroscopic images acquired on rat brain in vivo. DSU improved the magnetic field homogeneity over all spatial slices, with a more pronounced effect on the slices positioned away from the magnet isocenter, thereby making the magnetic field homogeneity highly uniform over an extended volume. Magn Reson Med 49:409–416, 2003.

Magnetic Field Modeling with a Set of Individual Localized Coils

A set of generic, circular individual coils is shown to be capable of generating highly complex magnetic field distributions in a flexible fashion. Arbitrarily oriented linear field gradients can be generated in three-dimensional as well as sliced volumes at amplitudes that allow imaging applications. The multi-coil approach permits the simultaneous generation of linear MRI encoding fields and complex shim fields by the same setup, thereby reducing system complexity. The choice of the sensitive volume over which the magnetic fields are optimized remains temporally and spatially variable at all times. The restriction of the field synthesis to experimentally relevant, smaller volumes such as single slices directly translates into improved efficiency, i.e. higher magnetic field amplitudes and/or reduced coil currents. For applications like arterial spin labeling, signal spoiling and diffusion weighting, perfect linearity of the gradient fields is not required and reduced demands on accuracy can also be readily translated into improved efficiency. The first experimental realization was achieved for mouse head MRI with 24 coils that were mounted on the surface of a cylindrical former. Oblique linear field gradients of 20 kHz/cm (47 mT/m) were generated with a maximum current of 1.4A which allowed radial imaging of a mouse head. The potential of the new approach for generating arbitrary magnetic field shapes is demonstrated by synthesizing the more complex, higher order spherical harmonic magnetic field distributions X2-Y2, Z2 and Z2X. The new multi-coil approach provides the framework for the integration of conventional imaging and shim coils into a single multi-coil system in which shape, strength, accuracy and spatial coverage of the magnetic field can be specifically optimized for the application at hand.

Magnetic field homogenization of the human prefrontal cortex with a set of localized electrical coils

The prefrontal cortex is a common target brain structure in psychiatry and neuroscience due to its role in working memory and cognitive control. Large differences in magnetic susceptibility between the air‐filled sinuses and the tissue/bone in the frontal part of the human head cause a strong and highly localized magnetic field focus in the prefrontal cortex. As a result, image distortion and signal dropout are observed in MR imaging. A set of external electrical coils is presented that provides localized and high‐amplitude shim fields in the prefrontal cortex, with minimum impact on the rest of the brain when combined with regular zero‐ to second‐order spherical harmonics shimming. The experimental realization of the new shim method strongly minimized or even eliminated signal dropout in gradient‐echo images acquired at settings typically used in functional magnetic resonance at 4 T. Magn Reson Med, 2009.

Multicoil shimming of the mouse brain.

MR imaging and spectroscopy allow the noninvasive measurement of brain function and physiology, but excellent magnetic field homogeneity is required for meaningful results. The homogenization of the magnetic field distribution in the mouse brain (i.e., shimming) is a difficult task due to complex susceptibility‐induced field distortions combined with the small size of the object. To date, the achievement of satisfactory whole brain shimming in the mouse remains a major challenge. The magnetic fields generated by a set of 48 circular coils (diameter 13 mm) that were arranged in a cylinder‐shaped pattern of 32 mm diameter and driven with individual dynamic current ranges of ±1 A are shown to be capable of substantially reducing the field distortions encountered in the mouse brain at 9.4 Tesla. Static multicoil shim fields allowed the reduction of the standard deviation of Larmor frequencies by 31% compared to second order spherical harmonics shimming and a 66% narrowing was achieved with the slice‐specific application of the multicoil shimming with a dynamic approach. For gradient echo imaging, multicoil shimming minimized shim‐related signal voids in the brain periphery and allowed overall signal gains of up to 51% compared to spherical harmonics shimming. Magn Reson Med, 2011.

Dynamically shimmed multivoxel 1H magnetic resonance spectroscopy and multislice magnetic resonance spectroscopic imaging of the human brain

In vivo multivoxel Magnetic Resonance Spectroscopy (MRS) and multislice Magnetic Resonance Spectroscopic Imaging (MRSI) are extremely susceptible to poor homogeneity of the static magnetic field. Existing room‐temperature (RT) shim technology can adequately optimize the B0 homogeneity of local volumes, such as single voxels. However, the widespread global homogeneity required for in vivo spectral acquisitions from multiple volumes in the human brain cannot be attained with a single RT shim setting. Dynamic shim updating (DSU) allows for use of local RT shim B0 homogeneity compensation capabilities in a global fashion. Here, by updating first‐ and second‐order shims on a voxel‐ and slice‐specific basis using a pre‐emphasized DSU system, we present multivoxel MRS and multislice MRSI of the human brain. These results demonstrate that DSU can increase multivoxel MRS acquisition capabilities and significantly improve the quality of multislice MRSI data. Magn Reson Med 57:587–591, 2007.

Compensation of gradient-induced magnetic field perturbations.

Pulsed magnetic field gradients are essential for MR imaging and localized spectroscopy applications. However, besides the desired linear field gradients, pulsed currents in a strong external magnetic field also generate unwanted effects like eddy currents, gradient coil vibrations and acoustic noise. While the temporal magnetic field perturbations associated with eddy currents lead to spectral line shape distortions and signal loss, the vibration-related modulations lead to anti-symmetrical sidebands of any large signal (i.e. water), thereby obliterating the signals from low-concentration metabolites. Here the measurement, characterization and compensation of vibration-related magnetic field perturbations is presented. Following a quantitative evaluation of the various temporal components of the main magnetic field, a digital B0 magnetic field waveform is generated which reduces all temporal variations of the main magnetic field to within the spectral noise level.

DYNAmic Multi-coIl TEchnique (DYNAMITE) shimming of the rat brain at 11.7 T.

The in vivo rat model is a workhorse in neuroscience research, preclinical studies and drug development. A repertoire of MR tools has been developed for its investigation; however, high levels of B0 magnetic field homogeneity are required for meaningful results. The homogenization of magnetic fields in the rat brain, i.e. shimming, is a difficult task because of a multitude of complex, susceptibility‐induced field distortions. Conventional shimming with spherical harmonic (SH) functions is capable of compensating for shallow field distortions in limited areas, e.g. in the cortex, but performs poorly in difficult‐to‐shim subcortical structures or for the entire brain. Based on the recently introduced multi‐coil approach for magnetic field modeling, the DYNAmic Multi‐coIl TEchnique (DYNAMITE) is introduced for magnetic field shimming of the in vivo rat brain and its benefits for gradient‐echo echo‐planar imaging (EPI) are demonstrated. An integrated multi‐coil/radiofrequency (MC/RF) system comprising 48 individual localized DC coils for B0 shimming and a surface transceive RF coil has been developed that allows MR investigations of the anesthetized rat brain in vivo. DYNAMITE shimming with this MC/RF set‐up is shown to reduce the B0 standard deviation to a third of that achieved with current shim technology employing static first‐ through third‐order SH shapes. The EPI signal over the rat brain increased by 31%, and a 24% gain in usable EPI voxels could be realized. DYNAMITE shimming is expected to critically benefit a wide range of preclinical and neuroscientific MR research. Improved magnetic field homogeneity, together with the achievable large brain coverage of this method, will be crucial when signal pathways, cortical circuitry or the brains default network are studied. Together with the efficiency gains of MC‐based shimming compared with SH approaches demonstrated recently, DYNAMITE shimming has the potential to replace conventional SH shim systems in small‐bore animal scanners. Copyright

Deuterium metabolic imaging (DMI) for MRI-based 3D mapping of metabolism in vivo

DMI shows metabolism of acetate and glucose in the brain and liver and reveals the Warburg effect in patients with brain tumors. Currently, the only widely available metabolic imaging technique in the clinic is positron emission tomography (PET) detection of the radioactive glucose analog 2-18F-fluoro-2-deoxy-d-glucose (18FDG). However, 18FDG-PET does not inform on metabolism downstream of glucose uptake and often provides ambiguous results in organs with intrinsic high glucose uptake, such as the brain. Deuterium metabolic imaging (DMI) is a novel, noninvasive approach that combines deuterium magnetic resonance spectroscopic imaging with oral intake or intravenous infusion of nonradioactive 2H-labeled substrates to generate three-dimensional metabolic maps. DMI can reveal glucose metabolism beyond mere uptake and can be used with other 2H-labeled substrates as well. We demonstrate DMI by mapping metabolism in the brain and liver of animal models and human subjects using [6,6′-2H2]glucose or [2H3]acetate. In a rat glioma model, DMI revealed pronounced metabolic differences between normal brain and tumor tissue, with high-contrast metabolic maps depicting the Warburg effect. We observed similar metabolic patterns and image contrast in two patients with a high-grade brain tumor after oral intake of 2H-labeled glucose. Further, DMI used in rat and human livers showed [6,6′-2H2]glucose stored as labeled glycogen. DMI is a versatile, robust, and easy-to-implement technique that requires minimal modifications to existing clinical magnetic resonance imaging scanners. DMI has great potential to become a widespread method for metabolic imaging in both (pre)clinical research and the clinic.