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Dive into the research topics where Selim Olcum is active.

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Featured researches published by Selim Olcum.


Optics Express | 2009

Tunable surface plasmon resonance on an elastomeric substrate

Selim Olcum; Askin Kocabas; Gulay Ertas; Abdullah Atalar; Atilla Aydinli

In this study, we demonstrate that periods of metallic gratings on elastomeric substrates can be tuned with external strain and hence are found to control the resonance condition of surface plasmon polaritons. We have excited the plasmon resonance on the elastomeric grating coated with gold and silver. The grating period is increased up to 25% by applying an external mechanical strain. The tunability of the elastomeric substrate provides the opportunity to use such gratings as efficient surface enhanced Raman spectroscopy substrates. Its been demonstrated that the Raman signal can be maximized by applying an external mechanical strain to the elastomeric grating.


IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control | 2012

An improved lumped element nonlinear circuit model for a circular CMUT cell

Hayrettin Koymen; Abdullah Atalar; Elif Aydogdu; Coskun Kocabas; H. Kagan Oguz; Selim Olcum; Alper Ozgurluk; Asli Unlugedik

This paper describes a correction and an extension in the previously published large signal equivalent circuit model for a circular capacitive micromachined ultrasonic transducer (CMUT) cell. The force model is rederived so that the energy and power is preserved in the equivalent circuit model. The model is able to predict the entire behavior of CMUT until the membrane touches the substrate. Many intrinsic properties of the CMUT cell, such as the collapse condition, collapse voltage, the voltage–displacement interrelation and the force equilibrium before and after collapse voltage in the presence of external static force, are obtained as a direct consequence of the model. The small signal equivalent circuit for any bias condition is obtained from the large signal model. The model can be implemented in circuit simulation tools and model predictions are in excellent agreement with finite element method simulations.


Proceedings of the National Academy of Sciences of the United States of America | 2014

Weighing nanoparticles in solution at the attogram scale

Selim Olcum; Nathan Cermak; Steven Charles Wasserman; Kathleen Christine; Hiroshi Atsumi; Kristofor Robert Payer; Wenjiang Shen; Jungchul Lee; Angela M. Belcher; Sangeeta N. Bhatia; Scott R. Manalis

Significance Naturally occurring and engineered nanoparticles (e.g., exosomes, viruses, protein aggregates, and self-assembled nanostructures) have size- and concentration-dependent functionality, yet existing characterization methods in solution are limited for diameters below ∼50 nm. In this study, we developed a nanomechanical resonator that can directly measure the mass of individual nanoparticles down to 10 nm with single-attogram (10−18 g) precision, enabling access to previously difficult-to-characterize natural and synthetic nanoparticles. Physical characterization of nanoparticles is required for a wide range of applications. Nanomechanical resonators can quantify the mass of individual particles with detection limits down to a single atom in vacuum. However, applications are limited because performance is severely degraded in solution. Suspended micro- and nanochannel resonators have opened up the possibility of achieving vacuum-level precision for samples in the aqueous environment and a noise equivalent mass resolution of 27 attograms in 1-kHz bandwidth was previously achieved by Lee et al. [(2010) Nano Lett 10(7):2537–2542]. Here, we report on a series of advancements that have improved the resolution by more than 30-fold, to 0.85 attograms in the same bandwidth, approaching the thermomechanical noise limit and enabling precise quantification of particles down to 10 nm with a throughput of more than 18,000 particles per hour. We demonstrate the potential of this capability by comparing the mass distributions of exosomes produced by different cell types and by characterizing the yield of self-assembled DNA nanoparticle structures.


PLOS ONE | 2013

Intracellular Water Exchange for Measuring the Dry Mass, Water Mass and Changes in Chemical Composition of Living Cells

Francisco Feijó Delgado; Nathan Cermak; Vivian C. Hecht; Sungmin Son; Yingzhong Li; Scott M. Knudsen; Selim Olcum; John M. Higgins; Jianzhu Chen; William H. Grover; Scott R. Manalis

We present a method for direct non-optical quantification of dry mass, dry density and water mass of single living cells in suspension. Dry mass and dry density are obtained simultaneously by measuring a cell’s buoyant mass sequentially in an H2O-based fluid and a D2O-based fluid. Rapid exchange of intracellular H2O for D2O renders the cell’s water content neutrally buoyant in both measurements, and thus the paired measurements yield the mass and density of the cell’s dry material alone. Utilizing this same property of rapid water exchange, we also demonstrate the quantification of intracellular water mass. In a population of E. coli, we paired these measurements to estimate the percent dry weight by mass and volume. We then focused on cellular dry density – the average density of all cellular biomolecules, weighted by their relative abundances. Given that densities vary across biomolecule types (RNA, DNA, protein), we investigated whether we could detect changes in biomolecular composition in bacteria, fungi, and mammalian cells. In E. coli, and S. cerevisiae, dry density increases from stationary to exponential phase, consistent with previously known increases in the RNA/protein ratio from up-regulated ribosome production. For mammalian cells, changes in growth conditions cause substantial shifts in dry density, suggesting concurrent changes in the protein, nucleic acid and lipid content of the cell.


IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control | 2010

Reducing anchor loss in micromechanical extensional mode resonators

Vahdettin Tas; Selim Olcum; M. Aksoy; Abdullah Atalar

In this work, we propose a novel method to increase the quality factor of extensional mode micromechanical resonators. The proposed resonator topology is suitable for integration in a silicon-based process to fabricate micromechanical filters and oscillators. It is a half-wavelength-long strip excited longitudinally by electrostatic forces, and it is isolated from the substrate by alternating with bars of a quarter wavelength long. This structure causes a large impedance mismatch between the resonator and the substrate and hence reduces the anchor loss considerably. The performance of the resonator is determined by finite element simulations. We introduce an equivalent electrical circuit to predict the performance of the resonator. The electrical model gives results consistent with the finite element simulations. The proposed resonator is expected to have a very small anchor loss resulting in a very high Q.


internaltional ultrasonics symposium | 2010

Radiation impedance of an array of circular capacitive micromachined ultrasonic transducers

Muhammed N. Senlik; Selim Olcum; Hayrettin Koymen; Abdullah Atalar

The radiation impedance of a capacitive micromachined ultrasonic transducer (cMUT) with a circular membrane is calculated analytically using its velocity profile for the frequencies up to its parallel resonance frequency for both the immersion and the airborne applications. The results are verified by finite element simulations. The work is extended to calculate the radiation impedance of an array of cMUT cells positioned in a hexagonal pattern. A higher radiation resistance improves the bandwidth as well as the efficiency of the cMUT. The radiation resistance is determined to be a strong function of the cell spacing. It is shown that a center-to-center cell spacing of 1.25 wavelengths maximizes the radiation resistance, if the membranes are not too thin. It is also found that excitation of nonsymmetric modes may reduce the radiation resistance in immersion applications.


IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control | 2005

Optimization of the gain-bandwidth product of capacitive micromachined ultrasonic transducers

Selim Olcum; Muhammed N. Senlik; Abdullah Atalar

Capacitive micromachined ultrasonic transducers (cMUT) have large bandwidths, but they typically have low conversion efficiencies. This paper defines a performance measure in the form of a gain-bandwidth product and investigates the conditions in which this performance measure is maximized. A Mason model corrected with finite-element simulations is used for the purpose of optimizing parameters. There are different performance measures for transducers operating in transmit, receive, or pulse-echo modes. Basic parameters of the transducer are optimized for those operating modes. Optimized values for a cMUT with silicon nitride membrane and immersed in water are given. The effect of including an electrical matching network is considered. In particular, the effect of a shunt inductor in the gain-bandwidth product is investigated. Design tools are introduced, which are used to determine optimal dimensions of cMUTs with the specified frequency or gain response.


IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control | 2010

Nonlinear modeling of an immersed transmitting capacitive micromachined ultrasonic transducer for harmonic balance analysis

H.K. Oguz; Selim Olcum; Muhammed N. Senlik; Vahdettin Tas; Abdullah Atalar; Hayrettin Koymen

Finite element method (FEM) is used for transient dynamic analysis of capacitive micromachined ultrasonic transducers (CMUT) and is particularly useful when the membranes are driven in the nonlinear regime. One major disadvantage of FEM is the excessive time required for simulation. Harmonic balance (HB) analysis, on the other hand, provides an accurate estimate of the steady-state response of nonlinear circuits very quickly. It is common to use Masons equivalent circuit to model the mechanical section of CMUT. However, it is not appropriate to terminate Masons mechanical LC section by a rigid pistons radiation impedance, especially for an immersed CMUT. We studied the membrane behavior using a transient FEM analysis and found out that for a wide range of harmonics around the series resonance, the membrane displacement can be modeled as a clamped radiator. We considered the root mean square of the velocity distribution on the membrane surface as the circuit variable rather than the average velocity. With this definition, the kinetic energy of the membrane mass is the same as that in the model. We derived the force and current equations for a clamped radiator and implemented them using a commercial HB simulator. We observed much better agreement between FEM and the proposed equivalent model, compared with the conventional model.


IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control | 2011

Deep-collapse operation of capacitive micromachined ultrasonic transducers

Selim Olcum; F. Y. Yamaner; Ayhan Bozkurt; Abdullah Atalar

Capacitive micromachined ultrasonic transducers (CMUTs) have been introduced as a promising technology for ultrasound imaging and therapeutic ultrasound applications which require high transmitted pressures for increased penetration, high signal-to-noise ratio, and fast heating. However, output power limitation of CMUTs compared with piezoelectrics has been a major drawback. In this work, we show that the output pressure of CMUTs can be significantly increased by deep-collapse operation, which utilizes an electrical pulse excitation much higher than the collapse voltage. We extend the analyses made for CMUTs working in the conventional (uncollapsed) region to the collapsed region and experimentally verify the findings. The static deflection profile of a collapsed membrane is calculated by an analytical approach within 0.6% error when compared with static, electromechanical finite element method (FEM) simulations. The electrical and mechanical restoring forces acting on a collapsed membrane are calculated. It is demonstrated that the stored mechanical energy and the electrical energy increase nonlinearly with increasing pulse amplitude if the membrane has a full-coverage top electrode. Utilizing higher restoring and electrical forces in the deep-collapsed region, we measure 3.5 MPa peak-to-peak pressure centered at 6.8 MHz with a 106% fractional bandwidth at the surface of the transducer with a collapse voltage of 35 V, when the pulse amplitude is 160 V. The experimental results are verified using transient FEM simulations.


IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control | 2007

Parametric linear modeling of circular cMUT membranes in vacuum

Hayrettin Koymen; Muhammed N. Senlik; Abdullah Atalar; Selim Olcum

We present a lumped element parametric model for the clamped circular membrane of a capacitive micromachined ultrasonic transducer (cMUT). The model incorporates an electrical port and two sets of acoustic ports, through which the cMUT couples to the medium. The modeling approach is based on matching a lumped element model and the mechanical impedance of the cMUT membrane at the resonance frequencies in vacuum. Very good agreement between finite element simulation results and model impedance is obtained. Equivalent circuit model parameters can be found from material properties and membrane dimensions without a need for finite element simulation

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Scott R. Manalis

Massachusetts Institute of Technology

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Nathan Cermak

Massachusetts Institute of Technology

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Steven Charles Wasserman

Massachusetts Institute of Technology

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Mark M. Stevens

Massachusetts Institute of Technology

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Robert J. Kimmerling

Massachusetts Institute of Technology

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