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Dive into the research topics where Shin-Ichi Funahashi is active.

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Featured researches published by Shin-Ichi Funahashi.


Nature Genetics | 2014

Recurrent gain-of-function mutations of RHOA in diffuse-type gastric carcinoma

Miwako Kakiuchi; Takashi Nishizawa; Hiroki R. Ueda; Kengo Gotoh; Atsushi Tanaka; Akimasa Hayashi; Shogo Yamamoto; Kenji Tatsuno; Hiroto Katoh; Yoshiaki Watanabe; Takashi Ichimura; Tetsuo Ushiku; Shin-Ichi Funahashi; Keisuke Tateishi; Ikuo Wada; Nobuyuki Shimizu; Sachiyo Nomura; Kazuhiko Koike; Yasuyuki Seto; Masashi Fukayama; Hiroyuki Aburatani; Shumpei Ishikawa

Diffuse-type gastric carcinoma (DGC) is characterized by a highly malignant phenotype with prominent infiltration and stromal induction. We performed whole-exome sequencing on 30 DGC cases and found recurrent RHOA nonsynonymous mutations. With validation sequencing of an additional 57 cases, RHOA mutation was observed in 25.3% (22/87) of DGCs, with mutational hotspots affecting the Tyr42, Arg5 and Gly17 residues in RHOA protein. These positions are highly conserved among RHO family members, and Tyr42 and Arg5 are located outside the guanine nucleotide–binding pocket. Several lines of functional evidence indicated that mutant RHOA works in a gain-of-function manner. Comparison of mutational profiles for the major gastric cancer subtypes showed that RHOA mutations occur specifically in DGCs, the majority of which were histopathologically characterized by the presence of poorly differentiated adenocarcinomas together with more differentiated components in the gastric mucosa. Our findings identify a potential therapeutic target for this poor-prognosis subtype of gastric cancer with no available molecularly targeted drugs.


Stem Cells | 2012

LGR5‐Positive Colon Cancer Stem Cells Interconvert with Drug‐Resistant LGR5‐Negative cells and are Capable of Tumor Reconstitution

Shinta Kobayashi; Hisafumi Yamada-Okabe; Masami Suzuki; Osamu Natori; Atsuhiko Kato; Koichi Matsubara; Yu Jau Chen; Masaki Yamazaki; Shin-Ichi Funahashi; Eri Hashimoto; Yoshinori Watanabe; Hironori Mutoh; Motooki Ashihara; Chie Kato; Takeshi Watanabe; Takashi Yoshikubo; Norikazu Tamaoki; Takahiro Ochiya; Masahiko Kuroda; Arnold J. Levine; Tatsumi Yamazaki

The cancer stem cell (CSC) concept has been proposed as an attractive theory to explain cancer development, and CSCs themselves have been considered as targets for the development of diagnostics and therapeutics. However, many unanswered questions concerning the existence of slow cycling/quiescent, drug‐resistant CSCs remain. Here we report the establishment of colon cancer CSC lines, interconversion of the CSCs between a proliferating and a drug‐resistant state, and reconstitution of tumor hierarchy from the CSCs. Stable cell lines having CSC properties were established from human colon cancer after serial passages in NOD/Shi‐scid, IL‐2Rγnull (NOG) mice and subsequent adherent cell culture of these tumors. By generating specific antibodies against LGR5, we demonstrated that these cells expressed LGR5 and underwent self‐renewal using symmetrical divisions. Upon exposure to irinotecan, the LGR5+ cells transitioned into an LGR5− drug‐resistant state. The LGR5− cells converted to an LGR5+ state in the absence of the drug. DNA microarray analysis and immunohistochemistry demonstrated that HLA‐DMA was specifically expressed in drug‐resistant LGR5− cells, and epiregulin was expressed in both LGR5+ and drug‐resistant LGR5− cells. Both cells sustained tumor initiating activity in NOG mice, giving rise to a tumor tissue hierarchy. In addition, anti‐epiregulin antibody was found to be efficacious in a metastatic model. Both LGR5+ and LGR5− cells were detected in the tumor tissues of colon cancer patients. The results provide new biological insights into drug resistance of CSCs and new therapeutic options for cancer treatment. STEM CELLS 2012;30:2631–2644


Clinical Cancer Research | 2006

Identification of ROBO1 as a Novel Hepatocellular Carcinoma Antigen and a Potential Therapeutic and Diagnostic Target

Hirotaka Ito; Shin-Ichi Funahashi; Naoko Yamauchi; Junji Shibahara; Yutaka Midorikawa; Shigeto Kawai; Yasuko Kinoshita; Akira Watanabe; Yoshitaka Hippo; Toshihiko Ohtomo; Hiroko Iwanari; Atsushi Nakajima; Masatoshi Makuuchi; Masashi Fukayama; Yuichi Hirata; Takao Hamakubo; Tatsuhiko Kodama; Masayuki Tsuchiya; Hiroyuki Aburatani

Purpose: Hepatocellular carcinoma is the most common primary malignancy of the liver and accounts for as many as one million deaths annually worldwide. The present study was done to identify new transmembrane molecules for antibody therapy in hepatocellular carcinoma. Experimental Design: Gene expression profiles of pooled total RNA from three tissues each of moderately differentiated and poorly differentiated hepatocellular carcinoma were compared with those of normal liver, noncancerous liver tissue in hepatocellular carcinoma patients, 30 normal tissue samples, and five fetal tissue samples. Target genes up-regulated specifically in hepatocellular carcinoma were validated by immunohistochemical analysis and complement-dependent cytotoxicity assay using monoclonal antibodies generated against target molecules. Results: The human homologue of the Drosophila Roundabout gene, axon guidance receptor homologue 1, ROBO1/DUTT1, a member of the immunoglobulin superfamily, was highly expressed in hepatocellular carcinoma, whereas it showed only a limited distribution in normal tissues. On immunohistochemical analysis using a newly generated anti-ROBO1 monoclonal antibody, positive signals were observed in 83 of 98 cases of hepatocellular carcinoma (84.7%). The mAb B2318C induced complement-dependent cytotoxicity in ROBO1-expressing cell lines and in the liver cancer cell line PLC/PRF/5. Strikingly, the ectodomain of ROBO1 was detected not only in the culture medium of liver cancer cell lines (PLC/PRF/5, HepG2, etc.) but also in sera from hepatocellular carcinoma patients (6 of 11). Conclusions: This is the first report that ROBO1 is overexpressed in hepatocellular carcinoma and shed into serum in humans. These observations suggest that ROBO1 is a potential new serologic marker for hepatocellular carcinoma and may represent a new therapeutic target.


Journal of Biochemistry | 2017

Generation and characterization of monoclonal antibodies against human LGR6.

Shin-Ichi Funahashi; Yasunori Suzuki; Kiyotaka Nakano; Shigeto Kawai; Masami Suzuki

Leucine-rich repeat-containing G protein-coupled receptor 6 (LGR6) is a seven-pass transmembrane protein known to be a marker of stem cells in several organs. To deepen our understanding of the cell biology of LGR6-positive cells, including stem cells, we generated monoclonal antibodies (mAbs) against human LGR6. DNA immunization followed by whole-cell immunization with LGR6-expressing transfectants was performed to obtain mAbs that recognized the native form of LGR6. Hybridomas were screened by flow cytometry using LGR6-transfected cells. Because the molecules of LGR4, LGR5, and LGR6 are 50% homologous at the amino acid level, specificity of the mAbs was confirmed by transfectants expressing LGR4, LGR5, or LGR6. Three LGR6-specific mAbs were generated. Two of the three mAbs (designated 43A6 and 43D10) recognized the large N-terminal extracellular domain of LGR6, and competitively blocked the binding of R-spondin 1, which is known to be the ligand for LGR6. The other mAb, 43A25, recognized the seven-pass transmembrane domain of LGR6, and was able to be used for immunoblot analysis. In addition, mAbs 43A6 and 43D10 detected endogenous expression of LGR6 in cancer cell lines. We expect that our mAbs will contribute to widening our understanding of LGR6-positive cells in humans.


Acta Histochemica Et Cytochemica | 2015

Intensive Immunofluorescence Staining Methods for Low Expression Protein: Detection of Intestinal Stem Cell Marker LGR5

Masaki Yamazaki; Atsuhiko Kato; Yoko Zaitsu; Takeshi Watanabe; Makoto Iimori; Shin-Ichi Funahashi; Hiroyuki Kitao; Hiroshi Saeki; Eiji Oki; Masami Suzuki

Leucine-rich repeat-containing G-protein coupled receptor 5, or LGR5, is a molecule that recognizes stem cells in multiple organs and also in colon cancer. Previously, we have developed monoclonal antibodies specific to LGR5 protein that can be used for immunofluorescence staining, but because a very low level of LGR5 protein is expressed, the visualization technique needed to be enhanced. To develop procedures to detect LGR5 protein in various specimens by immunofluorescence staining, we evaluated the Alexa-labeled streptavidin biotin (LSAB), the Qdot, and the tyramide methods. The detection sensitivity was highest in the tyramide method followed by the Qdot method, whereas subcellular localization of the protein was most clear in the Qdot method, because the Qdot method gave a high S/N ratio that could show a low background. Thus, the tyramide method is superior to the Q-dot method for intensifying the signal of a low expression protein, and the Qdot method is superior to the tyramide method for identifying the subcellular localization of the target protein. The results of the present study will be helpful in providing more insight into the pathophysiological roles of LGR5-positive cancer stem cells and in developing therapeutic approaches for targeting cancer stem cells.


Oncotarget | 2018

DGC-specific RHOA mutations maintained cancer cell survival and promoted cell migration via ROCK inactivation

Takashi Nishizawa; Kiyotaka Nakano; Aya Harada; Miwako Kakiuchi; Shin-Ichi Funahashi; Masami Suzuki; Shumpei Ishikawa; Hiroyuki Aburatani

RHOA missense mutations exist specifically in diffuse type gastric cancers (DGC) and are considered one of the DGC driver genes, but it is not fully understood how RHOA mutations contribute to DGC development. Here we examined how RHOA mutations affect cancer cell survival and cell motility. We revealed that cell survival was maintained by specific mutation sites, namely G17, Y42, and L57. Because these functional mutations suppressed MLC2 phosphorylation and actin stress fiber formation, we realized they act in a dominant-negative fashion against the ROCK pathway. Through the same inactivating mechanism that maintained cell survival, RHOA mutations also increased cell migration activity. Cell survival and migration studies on CLDN18-ARHGAP (CLG) fusions, which are known to be mutually exclusive to RHOA mutations, showed that CLG fusions complemented cell survival under RHOA knockdown condition and also induced cell migration. Site-directed mutagenesis analysis revealed the importance of the GAP domain and indicated that CLG fusions maintained RHOA in the inactive form. Taken together, these findings show that the inactivation of ROCK would be a key step in DGC development, so ROCK activation might provide novel therapeutic opportunities.


Journal of Toxicologic Pathology | 2018

Difference in morphology and interactome profiles between orthotopic and subcutaneous gastric cancer xenograft models

Kiyotaka Nakano; Takashi Nishizawa; Daisuke Komura; Etsuko Fujii; Makoto Monnai; Atsuhiko Kato; Shin-Ichi Funahashi; Shumpei Ishikawa; Masami Suzuki

In xenograft models, orthotopic (ORT) engraftment is thought to provide a different tumor microenvironment compared with subcutaneous (SC) engraftment. We attempted to characterize the biological difference between OE19 (adenocarcinoma of the gastroesophageal junction) SC and ORT models by pathological analysis and CASTIN (CAncer-STromal INteractome) analysis, which is a novel method developed to analyze the tumor-stroma interactome framework. In SC models, SCID mice were inoculated subcutaneously with OE19 cells, and tumor tissues were sampled at 3 weeks. In ORT models, SCID mice were inoculated under the serosal membrane of the stomach wall, and tumor tissues were sampled at 3 and 6 weeks after engraftment. Results from the two models were then compared. Histopathologically, the SC tumors were well circumscribed from the adjacent tissue, with scant stroma and the formation of large ductal structures. In contrast, the ORT tumors were less circumscribed, with small ductal structures invading into abundant stroma. Then we compared the transcriptome profiles of human tumor cells with the mouse stromal cells of each model by species-specific RNA sequencing. With CASTIN analysis, we successfully identified several interactions that are known to affect the tumor microenvironment as being selectively enhanced in the ORT model. In conclusion, pathological analysis and CASTIN analysis revealed that ORT models of OE19 cells have a more invasive character and enhanced interaction with stromal cells compared with SC models.


Journal of Biochemistry | 2018

Generation of an anti-desmoglein 3 antibody without pathogenic activity of pemphigus vulgaris for therapeutic application to squamous cell carcinoma

Shin-Ichi Funahashi; Shigeto Kawai; Etsuko Fujii; Kenji Taniguchi; Kiyotaka Nakano; Shumpei Ishikawa; Hiroyuki Aburatani; Masami Suzuki

&NA; It is ideal for the target antigen of a cytotoxic therapeutic antibody against cancer to be cancer‐specific, but such antigens are rare. Thus an alternative strategy for target selection is necessary. Desmoglein 3 (DSG3) is highly expressed in lung squamous cell carcinoma, while it is well‐known that anti‐DSG3 antibodies cause pemphigus vulgaris, an autoimmune disease. We evaluated DSG3 as a novel target by selecting an epitope that exerts efficacy against cancer with no pathogenic effects in normal tissues. Pathogenic anti‐DSG3 antibodies induce skin blisters by inhibiting the cell‐cell interaction in a Ca2+‐dependent manner. We screened anti‐DSG3 antibodies that bind DGS3 independent of Ca2+ and have high antibody‐dependent cell cytotoxicity (ADCC) activity against DSG3‐expressing cells. These selected antibodies did not inhibit cell‐cell interaction and showed ADCC activity against squamous cell carcinoma cell lines. Furthermore, one of the DSG3 antibodies showed anti‐tumour activity in tumour mouse models but did not induce adverse effects such as blister formation in the skin. Thus it was possible to generate an antibody against DSG3 by using an appropriate epitope that retained efficacy with no pathogenicity. This approach of epitope selection may expand the variety of druggable target molecules.


Journal of Immunological Methods | 2007

Viral envelope protein gp64 transgenic mouse facilitates the generation of monoclonal antibodies against exogenous membrane proteins displayed on baculovirus.

Ryoichi Saitoh; Toshihiko Ohtomo; Yoshiki Yamada; Nobuo Kamada; Jun-ichi Nezu; Naoki Kimura; Shin-Ichi Funahashi; Koh Furugaki; Takeshi Yoshino; Yosuke Kawase; Atsuhiko Kato; Otoya Ueda; Kou-ichi Jishage; Masami Suzuki; Rie Fukuda; Masahiro Arai; Hiroko Iwanari; Kazuaki Takahashi; Toshiko Sakihama; Iwao Ohizumi; Tatsuhiko Kodama; Masayuki Tsuchiya; Takao Hamakubo


Archive | 2005

Genes associated with the maintenance of differentiation of smooth muscle cells

Toshio Ota; Takao Isogai; Tetsuo Nishikawa; Kaoru Otsuka; Junichi Yamamoto; Shizuko Ishii; Tomoyasu Sugiyama; Ai Wakamatsu; Keiichi Nagai; Tetsuji Otsuki; Shin-Ichi Funahashi; Shoji Miyata; Kenji Sobue; Kenichiro Hayashi

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Hiroyuki Aburatani

Beth Israel Deaconess Medical Center

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Tetsuji Otsuki

Taisho Pharmaceutical Co.

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Tetsuo Nishikawa

National Institute of Advanced Industrial Science and Technology

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Tomoyasu Sugiyama

Railway Technical Research Institute

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Hiroyuki Aburatani

Beth Israel Deaconess Medical Center

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