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Dive into the research topics where Shireen D. Geimer is active.

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Featured researches published by Shireen D. Geimer.


Applied Optics | 2001

Three-dimensional simulation of near-infrared diffusion in tissue: boundary condition and geometry analysis for finite-element image reconstruction

Brian W. Pogue; Shireen D. Geimer; Troy O. McBride; Shudong Jiang; Ulf Österberg; Keith D. Paulsen

Imaging of tissue with near-infrared spectral tomography is emerging as a practicable method to map hemoglobin concentrations within tissue. However, the accurate recovery of images by using modeling methods requires a good match between experiments and the model prediction of light transport in tissue. We illustrate the potential for a match between (i) three-dimensional (3-D) frequency-domain diffusion theory, (ii) two-dimensional diffusion theory, (iii) Monte Carlo simulations, and (iv) experimental data from tissue-simulating phantoms. Robin-type boundary conditions are imposed in the 3-D model, which can be implemented with a scalar coupling coefficient relating the flux through the surface to the diffuse fluence rate at the same location. A comparison of 3-D mesh geometries for breast imaging indicates that relative measurements are sufficiently similar when calculated on either cylindrical or female breast shapes, suggesting that accurate reconstruction may be achieved with the simpler cylindrical mesh. Simulation studies directly assess the effects from objects extending out of the image plane, with results suggesting that spherically shaped objects reconstruct at lower contrast when their diameters are less than 15-20 mm. The algorithm presented here illustrates that a 3-D forward diffusion model can be used with circular tomographic measurements to reconstruct two-dimensional images of the interior absorption coefficient.


IEEE Transactions on Medical Imaging | 2004

Microwave image reconstruction from 3-D fields coupled to 2-D parameter estimation

Qianqian Fang; Paul M. Meaney; Shireen D. Geimer; A. V. Streltsov; Keith D. Paulsen

An efficient Gauss-Newton iterative imaging technique utilizing a three-dimensional (3-D) field solution coupled to a two-dimensional (2-D) parameter estimation scheme (3-D/2-D) is presented for microwave tomographic imaging in medical applications. While electromagnetic wave propagation is described fully by a 3-D vector field, a 3-D scalar model has been applied to improve the efficiency of the iterative reconstruction process with apparently limited reduction in accuracy. In addition, the image recovery has been restricted to 2-D but is generalizable to three dimensions. Image artifacts related primarily to 3-D effects are reduced when compared with results from an entirely two- dimensional inversion (2-D/2-D). Important advances in terms of improving algorithmic efficiency include use of a block solver for computing the field solutions and application of the dual mesh scheme and adjoint approach for Jacobian construction. Methods which enhance the image quality such as the log-magnitude/unwrapped phase minimization were also applied. Results obtained from synthetic measurement data show that the new 3-D/2-D algorithm consistently outperforms its 2-D/2-D counterpart in terms of reducing the effective imaging slice thickness in both permittivity and conductivity images over a range of inclusion sizes and background medium contrasts.


International Journal of Hyperthermia | 1999

Optimization of pelvic heating rate distributions with electromagnetic phased arrays

Keith D. Paulsen; Shireen D. Geimer; Jingwu Tang; William E. Boyse

Deep heating of pelvic tumours with electromagnetic phased arrays has recently been reported to improve local tumour control when combined with radiotherapy in a randomized clinical trial despite the fact that rather modest elevations in tumour temperatures were achieved. It is reasonable to surmise that improvements in temperature elevation could lead to even better tumour response rates, motivating studies which attempt to explore the parameter space associated with heating rate delivery in the pelvis. Computational models which are based on detailed three-dimensional patient anatomy are readily available and lend themselves to this type of investigation. In this paper, volume average SAR is optimized in a predefined target volume subject to a maximum allowable volume average SAR outside this zone. Variables under study include the position of the target zone, the number and distribution of radiators and the applicator operating frequency. The results show a clear preference for increasing frequency beyond 100 MHz, which is typically applied clinically, especially as the number of antennae increases. Increasing both the number of antennae per circumferential distance around the patient, as well as the number of independently functioning antenna bands along the patient length, is important in this regard, although improvements were found to be more significant with increasing circumferential antenna density. However, there is considerable site specific variation and cases occur where lower numbers of antennae spread out over multiple longitudinal bands are more advantageous. The results presented here have been normalized relative to an optimized set of antenna array amplitudes and phases operating at 100 MHz which is a common clinical configuration. The intent is to provide some indications of avenues for improving the heating rate distributions achievable with current technology.


Breast Cancer Research | 2013

Microwave imaging for neoadjuvant chemotherapy monitoring: initial clinical experience

Paul M. Meaney; Peter A. Kaufman; Lori Muffly; Michael Click; Stephen P Poplack; Wendy A. Wells; Gary N. Schwartz; Roberta M. di Florio-Alexander; Tor D. Tosteson; Zhongze Li; Shireen D. Geimer; Margaret W. Fanning; Tian Zhou; Neil R. Epstein; Keith D. Paulsen

IntroductionMicrowave tomography recovers images of tissue dielectric properties, which appear to be specific for breast cancer, with low-cost technology that does not present an exposure risk, suggesting the modality may be a good candidate for monitoring neoadjuvant chemotherapy.MethodsEight patients undergoing neoadjuvant chemotherapy for locally advanced breast cancer were imaged longitudinally five to eight times during the course of treatment. At the start of therapy, regions of interest (ROIs) were identified from contrast-enhanced magnetic resonance imaging studies. During subsequent microwave examinations, subjects were positioned with their breasts pendant in a coupling fluid and surrounded by an immersed antenna array. Microwave property values were extracted from the ROIs through an automated procedure and statistical analyses were performed to assess short term (30 days) and longer term (four to six months) dielectric property changes.ResultsTwo patient cases (one complete and one partial response) are presented in detail and demonstrate changes in microwave properties commensurate with the degree of treatment response observed pathologically. Normalized mean conductivity in ROIs from patients with complete pathological responses was significantly different from that of partial responders (P value = 0.004). In addition, the normalized conductivity measure also correlated well with complete pathological response at 30 days (P value = 0.002).ConclusionsThese preliminary findings suggest that both early and late conductivity property changes correlate well with overall treatment response to neoadjuvant therapy in locally advanced breast cancer. This result is consistent with earlier clinical outcomes that lesion conductivity is specific to differentiating breast cancer from benign lesions and normal tissue.


IEEE Transactions on Biomedical Engineering | 2012

Clinical Microwave Tomographic Imaging of the Calcaneus: A First-in-Human Case Study of Two Subjects

Paul M. Meaney; Douglas W. Goodwin; Amir H. Golnabi; Tian Zhou; Matthew J. Pallone; Shireen D. Geimer; Gregory Burke; Keith D. Paulsen

We have acquired 2-D and 3-D microwave tomographic images of the calcaneus bones of two patients to assess correlation of the microwave properties with X-ray density measures. The two volunteers were selected because each had one leg immobilized for at least six weeks during recovery from a lower leg injury. A soft-prior regularization technique was incorporated with the microwave imaging to quantitatively assess the bulk dielectric properties within the bone region. Good correlation was observed between both permittivity and conductivity and the computed tomography-derived density measures. These results represent the first clinical examples of microwave images of the calcaneus and some of the first 3-D tomographic images of any anatomical site in the living human.


IEEE Transactions on Biomedical Engineering | 2002

Quantification of 3-D field effects during 2-D microwave imaging

Paul M. Meaney; Keith D. Paulsen; Shireen D. Geimer; Shah A. Haider; Margaret W. Fanning

Two-dimensional (2-D) approaches to microwave imaging have dominated the research landscape primarily due to the moderate levels of measurement data, data-acquisition time, and computational costs required. Three-dimensional (3-D) approaches have been investigated in simulation, phantom, and animal experiments. While 3-D approaches are certainly important in terms of the potential to improve image quality, their associated costs are significant at this time. In addition, benchmarks are needed to evaluate these new generation systems as more 3-D methods begin to appear. In this paper, we present a systematic series of experiments which assess the capability of our 2-D system to image classical 3-D geometries. We demonstrate where current methods suffer from 3-D effects but also identify situations where they remain quite useful. Comparisons between reconstructions utilizing phantom measurements and simulated 3-D data are also shown to validate the results. These findings suggest that for certain biomedical applications, 2-D approaches remain quite attractive.


Medical Physics | 2013

Integration of microwave tomography with magnetic resonance for improved breast imaging

Paul M. Meaney; Amir H. Golnabi; Neil R. Epstein; Shireen D. Geimer; Margaret W. Fanning; John B. Weaver; Keith D. Paulsen

PURPOSE Breast magnetic resonance imaging is highly sensitive but not very specific for the detection of breast cancer. Opportunities exist to supplement the image acquisition with a more specific modality provided the technical challenges of meeting space limitations inside the bore, restricted breast access, and electromagnetic compatibility requirements can be overcome. Magnetic resonance (MR) and microwave tomography (MT) are complementary and synergistic because the high resolution of MR is used to encode spatial priors on breast geometry and internal parenchymal features that have distinct electrical properties (i.e., fat vs fibroglandular tissue) for microwave tomography. METHODS The authors have overcome integration challenges associated with combining MT with MR to produce a new coregistered, multimodality breast imaging platform--magnetic resonance microwave tomography, including: substantial illumination tank size reduction specific to the confined MR bore diameter, minimization of metal content and composition, reduction of metal artifacts in the MR images, and suppression of unwanted MT multipath signals. RESULTS MR SNR exceeding 40 dB can be obtained. Proper filtering of MR signals reduces MT data degradation allowing MT SNR of 20 dB to be obtained, which is sufficient for image reconstruction. When MR spatial priors are incorporated into the recovery of MT property estimates, the errors between the recovered versus actual dielectric properties approach 5%. CONCLUSIONS The phantom and human subject exams presented here are the first demonstration of combining MT with MR to improve the accuracy of the reconstructed MT images.


2011 IEEE Topical Conference on Biomedical Wireless Technologies, Networks, and Sensing Systems | 2011

Microwave imaging for breast cancer detection and therapy monitoring

Amir H. Golnabi; Paul M. Meaney; Shireen D. Geimer; Keith D. Paulsen

Microwave imaging is based on recovering the electrical properties, namely permittivity and conductivity, of materials. Microwave imaging for biomedical applications is particularly interesting, because the available range of dielectric properties of different tissues can provide substantial functional information about their health. Breast cancer detection and treatment response monitoring are areas where microwave imaging is becoming a promising alternative/complementary technique to current imaging modalities, mainly due to the significant dielectric property contrast between normal and malignant breast tissues. In this paper, we present our latest clinical microwave imaging system along with some 2D and 3D reconstructed images from different phantom experiments and patient data.


Journal of Medical Physics | 2011

Comparison of no-prior and soft-prior regularization in biomedical microwave imaging

Amir H. Golnabi; Paul M. Meaney; Shireen D. Geimer; Keith D. Paulsen

Microwave imaging for medical applications is attractive because the range of dielectric properties of different soft tissues can be substantial. Breast cancer detection and monitoring of treatment response are areas where this technology could be important because of the contrast between normal and malignant tissue. Unfortunately, the technique is unable to achieve the high spatial resolution at depth in tissue which is available from other conventional modalities such as x-ray computed tomography (CT) or magnetic resonance imaging (MRI). We have incorporated a soft-prior regularization strategy within our microwave reconstruction algorithm and compared it with the images obtained with traditional no-prior (Levenberg-Marquardt) regularization. Initial simulation and phantom results show a significant improvement of the recovered electrical properties. Specifically, errors in the microwave property estimates were improved by as much as 95%. The effects of a false-inclusion region were also evaluated and the results show that a small residual property bias of 6% in permittivity and 15% in conductivity can occur that does not otherwise degrade the property recovery accuracy of inclusions that actually exist. The work sets the stage for integrating microwave imaging with MR for improved resolution and functional imaging of the breast in the future.


Biomedical Optics Express | 2011

Importance of phase unwrapping for the reconstruction of microwave tomographic images.

Tomasz M. Grzegorczyk; Paul M. Meaney; Soon Ik Jeon; Shireen D. Geimer; Keith D. Paulsen

Microwave image reconstruction is typically based on a regularized least-square minimization of either the complex-valued field difference between recorded and modeled data or the logarithmic transformation of these field differences. Prior work has shown anecdotally that the latter outperforms the former in limited surveys of simulated and experimental phantom results. In this paper, we provide a theoretical explanation of these empirical findings by developing closed form solutions for the field and the inverted electromagnetic property parameters in one dimension which reveal the dependency of the estimated permittivity and conductivity on the absolute (unwrapped) phase of the measured signal at the receivers relative to the source transmission. The analysis predicts the poor performance of complex-valued field minimization as target size and/or frequency and electromagnetic contrast increase. Such poor performance is avoided by logarithmic transformation and preservation of absolute measured signal phase. Two-dimensional experiments based on both synthetic and clinical data are used to confirm these findings. Robustness of the logarithmic transformation to variation in the initial guess of the reconstructed target properties is also shown. The results are generalizable to three dimensions and indicate that the minimization form with logarithmic transformation offers image reconstruction performance characteristics that are much more desirable for medial microwave imaging applications relative to minimizing differences in complex-valued field quantities.

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