Shirin Ilkhanizadeh
University of California, San Francisco
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Publication
Featured researches published by Shirin Ilkhanizadeh.
Cancer Cell | 2017
Qi-Wen Fan; Ozlem Aksoy; Robyn Wong; Shirin Ilkhanizadeh; Chris J. Novotny; William Clay Gustafson; Albert Truong; Geraldine Cayanan; Erin F. Simonds; Daphne A. Haas-Kogan; Joanna J. Phillips; Theodore Nicolaides; Masanori Okaniwa; Kevan M. Shokat; William A. Weiss
Although signaling from phosphatidylinositol 3-kinase (PI3K) and AKT to mechanistic target of rapamycin (mTOR) is prominently dysregulated in high-grade glial brain tumors, blockade of PI3K or AKT minimally affects downstream mTOR activity in glioma. Allosteric mTOR inhibitors, such as rapamycin, incompletely block mTORC1 compared with mTOR kinase inhibitors (TORKi). Here, we compared RapaLink-1, a TORKi linked to rapamycin, with earlier-generation mTOR inhibitors. Compared with rapamycin and Rapalink-1, TORKi showed poor durability. RapaLink-1 associated with FKBP12, an abundant mTOR-interacting protein, enabling accumulation of RapaLink-1. RapaLink-1 showed better efficacy than rapamycin or TORKi, potently blocking cancer-derived, activating mutants of mTOR. Our study re-establishes mTOR as a central target in glioma and traces the failure of existing drugs to incomplete/nondurable inhibition of mTORC1.
Cancer Research | 2015
Jasmine Lau; Shirin Ilkhanizadeh; Susan Wang; Yekaterina A. Miroshnikova; Nicolas A. Salvatierra; Robyn Wong; Christin Schmidt; Valerie M. Weaver; William A. Weiss; Anders Persson
High grade gliomas (HGG) are classified into four subgroups based on transcriptional signatures and phenotypic characteristics. In particular, the proneural-to-mesenchymal transition (PMT) is associated with increased malignancy, poor prognosis, and disease recurrence, but the underlying causes of PMT are still unclear. In this study, we investigated whether radiotherapy promotes PMT using a genetically engineered mouse model of proneural HGG. We found that cranial ionizing radiation induced robust and durable PMT in tumors. Additionally, we isolated primary proneural HGG cells from mouse and human tumors and demonstrate that radiation induced a sustained cell-intrinsic mesenchymal transition associated with increased invasiveness and resistance to the alkylating agent temozolomide. Expectedly, irradiation-induced PMT was also associated with activation of the STAT3 transcription factor, and the combination of STAT3 blockade using JAK2 inhibitors with radiation abrogated the mesenchymal transition and extended survival of mice. Taken together, our data suggest that clinical JAK2 inhibitors should be tested in conjunction with radiation in patients with proneural HGG as a new strategy for blocking the emergence of therapy-resistant mesenchymal tumors at relapse.
Scientific Reports | 2016
Miller Huang; Matthew L. Miller; Lauren K. McHenry; Tina Zheng; Qiqi Zhen; Shirin Ilkhanizadeh; Bruce R. Conklin; Marianne E. Bronner; William A. Weiss
Neural crest cells (NCC) are stem cells that generate different lineages, including neuroendocrine, melanocytic, cartilage, and bone. The differentiation potential of NCC varies according to the level from which cells emerge along the neural tube. For example, only anterior “cranial” NCC form craniofacial bone, whereas solely posterior “trunk” NCC contribute to sympathoadrenal cells. Importantly, the isolation of human fetal NCC carries ethical and scientific challenges, as NCC induction typically occur before pregnancy is detectable. As a result, current knowledge of NCC biology derives primarily from non-human organisms. Important differences between human and non-human NCC, such as expression of HNK1 in human but not mouse NCC, suggest a need to study human NCC directly. Here, we demonstrate that current protocols to differentiate human pluripotent stem cells (PSC) to NCC are biased toward cranial NCC. Addition of retinoic acid drove trunk-related markers and HOX genes characteristic of a posterior identity. Subsequent treatment with bone morphogenetic proteins (BMPs) enhanced differentiation to sympathoadrenal cells. Our approach provides methodology for detailed studies of human NCC, and clarifies roles for retinoids and BMPs in the differentiation of human PSC to trunk NCC and to sympathoadrenal lineages.
Molecular Cancer Research | 2018
Shirin Ilkhanizadeh; Hanna Sabelstrom; Yekaterina A. Miroshnikova; Aaron Frantz; Wen Zhu; Aurora Idilli; Johnathon N. Lakins; Christin Schmidt; David A. Quigley; Trenten Fenster; Edith Yuan; Jacqueline R Trzeciak; Supna Saxena; Olle R. Lindberg; Janna K. Mouw; Jason A. Burdick; Sergey Magnitsky; Mitchel S. Berger; Joanna J. Phillips; Daniele Arosio; Dandan Sun; Valerie M. Weaver; William A. Weiss; Anders Persson
Interstitial fluid pressure (IFP) presents a barrier to drug uptake in solid tumors, including the aggressive primary brain tumor glioblastoma (GBM). It remains unclear how fluid dynamics impacts tumor progression and can be targeted therapeutically. To address this issue, a novel telemetry-based approach was developed to measure changes in IFP during progression of GBM xenografts. Antisecretory factor (AF) is an endogenous protein that displays antisecretory effects in animals and patients. Here, endogenous induction of AF protein or exogenous administration of AF peptide reduced IFP and increased drug uptake in GBM xenografts. AF inhibited cell volume regulation of GBM cells, an effect that was phenocopied in vitro by the sodium-potassium-chloride cotransporter 1 (SLC12A2/NKCC1) inhibitor bumetanide. As a result, AF induced apoptosis and increased survival in GBM models. In vitro, the ability of AF to reduce GBM cell proliferation was phenocopied by bumetanide and NKCC1 knockdown. Next, AFs ability to sensitize GBM cells to the alkylating agent temozolomide, standard of care in GBM patients, was evaluated. Importantly, combination of AF induction and temozolomide treatment blocked regrowth in GBM xenografts. Thus, AF-mediated inhibition of cell volume regulation represents a novel strategy to increase drug uptake and improve outcome in GBM. Mol Cancer Res; 16(5); 777–90. ©2018 AACR.
Nature Neuroscience | 2013
Shirin Ilkhanizadeh; William A. Weiss
High-grade glioblastomas survive glucose-poor environments by becoming more stem cell–like. Increased glucose uptake by the transporter Glut3, a new biomarker of poor clinical outcome, drives this enhanced malignant progression.
Neuro-oncology | 2014
William A. Weiss; Robyn Wong; Qi-Wen Fan; Shirin Ilkhanizadeh; Mimi Lu; Janine Beyer; Nikhil Dube; John Forsayeth; Adrian P. Kells; Ting Xu; Krystof S. Bankiewicz; Greg Ducker; Morri Feldman; Kevan M. Shokat
Abstracts: AACR Special Conference on Translational Control of Cancer: A New Frontier in Cancer Biology and Therapy; October 27-30, 2016; San Francisco, CA | 2017
QiWen Fan; Ozlem Aksoy; Robyn Wong; Shirin Ilkhanizadeh; Chris J. Novotny; William Clay Gustafson; Albert Tuong; Geraldine Cayanan; Erin F. Simonds; Daphne A. Haas-Kogan; Joanna J. Phillips; Theo Nicolaides; Masanori Okaniwa; Kevan M. Shokat; William Weiss
Neuro-oncology | 2014
Shirin Ilkhanizadeh; Yekaterina A. Miroshnikova; Aaron Frantz; David James; Mitchel S. Berger; Tracy R. McKnight; Valerie M. Weaver; William A. Weiss; Anders Persson
Neuro-oncology | 2014
Anders Persson; Shirin Ilkhanizadeh; Yekaterina A. Miroshnikova; Aaron Frantz; John N. Lakins; C. David James; Tracy R. McKnight; Mitchel S. Berger; Gabriele Bergers; William A. Weiss; Valerie M. Weaver