Shu Lih Oh

A deep convolutional neural network model to classify heartbeats

The electrocardiogram (ECG) is a standard test used to monitor the activity of the heart. Many cardiac abnormalities will be manifested in the ECG including arrhythmia which is a general term that refers to an abnormal heart rhythm. The basis of arrhythmia diagnosis is the identification of normal versus abnormal individual heart beats, and their correct classification into different diagnoses, based on ECG morphology. Heartbeats can be sub-divided into five categories namely non-ectopic, supraventricular ectopic, ventricular ectopic, fusion, and unknown beats. It is challenging and time-consuming to distinguish these heartbeats on ECG as these signals are typically corrupted by noise. We developed a 9-layer deep convolutional neural network (CNN) to automatically identify 5 different categories of heartbeats in ECG signals. Our experiment was conducted in original and noise attenuated sets of ECG signals derived from a publicly available database. This set was artificially augmented to even out the number of instances the 5 classes of heartbeats and filtered to remove high-frequency noise. The CNN was trained using the augmented data and achieved an accuracy of 94.03% and 93.47% in the diagnostic classification of heartbeats in original and noise free ECGs, respectively. When the CNN was trained with highly imbalanced data (original dataset), the accuracy of the CNN reduced to 89.07%% and 89.3% in noisy and noise-free ECGs. When properly trained, the proposed CNN model can serve as a tool for screening of ECG to quickly identify different types and frequency of arrhythmic heartbeats.

Automated detection and localization of myocardial infarction using electrocardiogram

Identification and timely interpretation of changes occurring in the 12 electrocardiogram (ECG) leads is crucial to identify the types of myocardial infarction (MI). However, manual annotation of this complex nonlinear ECG signal is not only cumbersome and time consuming but also inaccurate. Hence, there is a need of computer aided techniques to be applied for the ECG signal analysis process. Going further, there is a need for incorporating this computerized software into the ECG equipment, so as to enable automated detection of MIs in clinics. Therefore, this paper proposes a novel method of automated detection and localization of MI by using ECG signal analysis. In our study, a total of 200 twelve lead ECG subjects (52 normal and 148 with MI) involving 611,405 beats (125,652 normal beats and 485,753 beats of MI ECG) are segmented from the 12 lead ECG signals. Firstly, ECG signal obtained from 12 ECG leads are subjected to discrete wavelet transform (DWT) up to four levels of decomposition. Then, 12 nonlinear features namely, approximate entropy ( E a x ), signal energy (?x), fuzzy entropy ( E f x ), Kolmogorov-Sinai entropy ( E k s x ), permutation entropy ( E p x ), Renyi entropy ( E r x ), Shannon entropy ( E s h x ), Tsallis entropy ( E t s x ), wavelet entropy ( E w x ), fractal dimension ( F D x ), Kolmogorov complexity ( C k x ), and largest Lyapunov exponent ( E L L E x ) are extracted from these DWT coefficients. The extracted features are then ranked based on the t value. Then these features are fed into the k-nearest neighbor (KNN) classifier one by one to get the highest classification performance by using minimum number of features. Our proposed method has achieved the highest average accuracy of 98.80%, sensitivity of 99.45% and specificity of 96.27% in classifying normal and MI ECG (two classes), by using 47 features obtained from lead 11 (V5). We have also obtained the highest average accuracy of 98.74%, sensitivity of 99.55% and specificity of 99.16% in differentiating the 10 types of MI and normal ECG beats (11 class), by using 25 features obtained from lead 9 (V3). In addition, our study results achieved an accuracy of 99.97% in locating inferior posterior infarction by using only lead 9 (V3) ECG signal. Our proposed method can be used as an automated diagnostic tool for (i) the detection of different (10 types of) MI by using 12 lead ECG signal, and also (ii) to locate the MI by analyzing only one lead without the need to analyze other leads. Thus, our proposed algorithm and computerized system software (incorporated into the ECG equipment) can aid the physicians and clinicians in accurate and faster location of MIs, and thereby providing adequate time available for the requisite treatment decision.

Deep convolutional neural network for the automated detection and diagnosis of seizure using EEG signals

An encephalogram (EEG) is a commonly used ancillary test to aide in the diagnosis of epilepsy. The EEG signal contains information about the electrical activity of the brain. Traditionally, neurologists employ direct visual inspection to identify epileptiform abnormalities. This technique can be time-consuming, limited by technical artifact, provides variable results secondary to reader expertise level, and is limited in identifying abnormalities. Therefore, it is essential to develop a computer-aided diagnosis (CAD) system to automatically distinguish the class of these EEG signals using machine learning techniques. This is the first study to employ the convolutional neural network (CNN) for analysis of EEG signals. In this work, a 13-layer deep convolutional neural network (CNN) algorithm is implemented to detect normal, preictal, and seizure classes. The proposed technique achieved an accuracy, specificity, and sensitivity of 88.67%, 90.00% and 95.00%, respectively.

Application of stacked convolutional and long short-term memory network for accurate identification of CAD ECG signals

Coronary artery disease (CAD) is the most common cause of heart disease globally. This is because there is no symptom exhibited in its initial phase until the disease progresses to an advanced stage. The electrocardiogram (ECG) is a widely accessible diagnostic tool to diagnose CAD that captures abnormal activity of the heart. However, it lacks diagnostic sensitivity. One reason is that, it is very challenging to visually interpret the ECG signal due to its very low amplitude. Hence, identification of abnormal ECG morphology by clinicians may be prone to error. Thus, it is essential to develop a software which can provide an automated and objective interpretation of the ECG signal. This paper proposes the implementation of long short-term memory (LSTM) network with convolutional neural network (CNN) to automatically diagnose CAD ECG signals accurately. Our proposed deep learning model is able to detect CAD ECG signals with a diagnostic accuracy of 99.85% with blindfold strategy. The developed prototype model is ready to be tested with an appropriate huge database before the clinical usage.

Automated diagnosis of congestive heart failure using dual tree complex wavelet transform and statistical features extracted from 2s of ECG signals

Identification of alarming features in the electrocardiogram (ECG) signal is extremely significant for the prediction of congestive heart failure (CHF). ECG signal analysis carried out using computer-aided techniques can speed up the diagnosis process and aid in the proper management of CHF patients. Therefore, in this work, dual tree complex wavelets transform (DTCWT)-based methodology is proposed for an automated identification of ECG signals exhibiting CHF from normal. In the experiment, we have performed a DTCWT on ECG segments of 2s duration up to six levels to obtain the coefficients. From these DTCWT coefficients, statistical features are extracted and ranked using Bhattacharyya, entropy, minimum redundancy maximum relevance (mRMR), receiver-operating characteristics (ROC), Wilcoxon, t-test and reliefF methods. Ranked features are subjected to k-nearest neighbor (KNN) and decision tree (DT) classifiers for automated differentiation of CHF and normal ECG signals. We have achieved 99.86% accuracy, 99.78% sensitivity and 99.94% specificity in the identification of CHF affected ECG signals using 45 features. The proposed method is able to detect CHF patients accurately using only 2s of ECG signal length and hence providing sufficient time for the clinicians to further investigate on the severity of CHF and treatments.

Automated EEG-based screening of depression using deep convolutional neural network

In recent years, advanced neurocomputing and machine learning techniques have been used for Electroencephalogram (EEG)-based diagnosis of various neurological disorders. In this paper, a novel computer model is presented for EEG-based screening of depression using a deep neural network machine learning approach, known as Convolutional Neural Network (CNN). The proposed technique does not require a semi-manually-selected set of features to be fed into a classifier for classification. It learns automatically and adaptively from the input EEG signals to differentiate EEGs obtained from depressive and normal subjects. The model was tested using EEGs obtained from 15 normal and 15 depressed patients. The algorithm attained accuracies of 93.5% and 96.0% using EEG signals from the left and right hemisphere, respectively. It was discovered in this research that the EEG signals from the right hemisphere are more distinctive in depression than those from the left hemisphere. This discovery is consistent with recent research and revelation that the depression is associated with a hyperactive right hemisphere. An exciting extension of this research would be diagnosis of different stages and severity of depression and development of a Depression Severity Index (DSI).

Characterization of Cardiovascular Diseases Using Wavelet Packet Decomposition and Nonlinear Measures of Electrocardiogram Signal

Cardiovascular diseases (CVDs) remain as the primary causes of disability and mortality worldwide and are predicted to continue rise in the future due to inadequate preventive actions. Electrocardiogram (ECG) signal contains vital clinical information that assists significantly in the diagnosis of CVDs. Assessment of subtle ECG parameters that indicate the presence of CVDs are extremely difficult and requires long hours of manual examination for accurate diagnosis. Hence, automated computer-aided diagnosis systems might help in overcoming these limitations. In this study, a novel algorithm is proposed based on the combination of wavelet packet decomposition (WPD) and nonlinear features. The proposed method achieved classification results of 97.98% accuracy, 99.61% sensitivity and 94.84% specificity with 8 reliefF ranked features. The proposed methodology is highly efficient in helping clinical staff to detect cardiac abnormalities using a single algorithm.

Automated diagnosis of arrhythmia using combination of CNN and LSTM techniques with variable length heart beats

Arrhythmia is a cardiac conduction disorder characterized by irregular heartbeats. Abnormalities in the conduction system can manifest in the electrocardiographic (ECG) signal. However, it can be challenging and time-consuming to visually assess the ECG signals due to the very low amplitudes. Implementing an automated system in the clinical setting can potentially help expedite diagnosis of arrhythmia, and improve the accuracies. In this paper, we propose an automated system using a combination of convolutional neural network (CNN) and long short-term memory (LSTM) for diagnosis of normal sinus rhythm, left bundle branch block (LBBB), right bundle branch block (RBBB), atrial premature beats (APB) and premature ventricular contraction (PVC) on ECG signals. The novelty of this work is that we used ECG segments of variable length from the MIT-BIT arrhythmia physio bank database. The proposed system demonstrated high classification performance in the handling of variable-length data, achieving an accuracy of 98.10%, sensitivity of 97.50% and specificity of 98.70% using ten-fold cross validation strategy. Our proposed model can aid clinicians to detect common arrhythmias accurately on routine screening ECG.

Automated Characterization of Cardiovascular Diseases Using Relative Wavelet Nonlinear Features Extracted from ECG Signals

Cardiovascular diseases (CVDs) are the leading cause of deaths worldwide. The rising mortality rate can be reduced by early detection and treatment interventions. Clinically, electrocardiogram (ECG) signal provides useful information about the cardiac abnormalities and hence employed as a diagnostic modality for the detection of various CVDs. However, subtle changes in these time series indicate a particular disease. Therefore, it may be monotonous, time-consuming and stressful to inspect these ECG beats manually. In order to overcome this limitation of manual ECG signal analysis, this paper uses a novel discrete wavelet transform (DWT) method combined with nonlinear features for automated characterization of CVDs. ECG signals of normal, and dilated cardiomyopathy (DCM), hypertrophic cardiomyopathy (HCM) and myocardial infarction (MI) are subjected to five levels of DWT. Relative wavelet of four nonlinear features such as fuzzy entropy, sample entropy, fractal dimension and signal energy are extracted from the DWT coefficients. These features are fed to sequential forward selection (SFS) technique and then ranked using ReliefF method. Our proposed methodology achieved maximum classification accuracy (acc) of 99.27%, sensitivity (sen) of 99.74%, and specificity (spec) of 98.08% with K-nearest neighbor (kNN) classifier using 15 features ranked by the ReliefF method. Our proposed methodology can be used by clinical staff to make faster and accurate diagnosis of CVDs. Thus, the chances of survival can be significantly increased by early detection and treatment of CVDs.

Deep convolutional neural network for the automated diagnosis of congestive heart failure using ECG signals

Congestive heart failure (CHF) is a chronic heart condition associated with debilitating symptoms that result in increased mortality, morbidity, healthcare expenditure and decreased quality of life. Electrocardiogram (ECG) is a noninvasive and simple diagnostic method that may demonstrate detectable changes in CHF. However, manual diagnosis of ECG signal is often subject to errors due to the small amplitude and duration of the ECG signals, and in isolation, is neither sensitive nor specific for CHF diagnosis. An automated computer-aided system may enhance the diagnostic objectivity and reliability of ECG signals in CHF. We present an 11-layer deep convolutional neural network (CNN) model for CHF diagnosis herein. This proposed CNN model requires minimum pre-processing of ECG signals, and no engineered features or classification are required. Four different sets of data (A, B, C and D) were used to train and test the proposed CNN model. Out of the four sets, Set B attained the highest accuracy of 98.97%, specificity and sensitivity of 99.01% and 98.87% respectively. The proposed CNN model can be put into practice and serve as a diagnostic aid for cardiologists by providing more objective and faster interpretation of ECG signals.