Shuichiro Tagane

A new subfamily classification of the leguminosae based on a taxonomically comprehensive phylogeny

The classification of the legume family proposed here addresses the long-known non-monophyly of the traditionally recognised subfamily Caesalpinioideae, by recognising six robustly supported monophyletic subfamilies. This new classification uses as its framework the most comprehensive phylogenetic analyses of legumes to date, based on plastid matK gene sequences, and including near-complete sampling of genera (698 of the currently recognised 765 genera) and ca. 20% (3696) of known species. The matK gene region has been the most widely sequenced across the legumes, and in most legume lineages, this gene region is sufficiently variable to yield well-supported clades. This analysis resolves the same major clades as in other phylogenies of whole plastid and nuclear gene sets (with much sparser taxon sampling). Our analysis improves upon previous studies that have used large phylogenies of the Leguminosae for addressing evolutionary questions, because it maximises generic sampling and provides a phylogenetic tree that is based on a fully curated set of sequences that are vouchered and taxonomically validated. The phylogenetic trees obtained and the underlying data are available to browse and download, facilitating subsequent analyses that require evolutionary trees. Here we propose a new community-endorsed classification of the family that reflects the phylogenetic structure that is consistently resolved and recognises six subfamilies in Leguminosae: a recircumscribed Caesalpinioideae DC., Cercidoideae Legume Phylogeny Working Group (stat. nov.), Detarioideae Burmeist., Dialioideae Legume Phylogeny Working Group (stat. nov.), Duparquetioideae Legume Phylogeny Working Group (stat. nov.), and Papilionoideae DC. The traditionally recognised subfamily Mimosoideae is a distinct clade nested within the recircumscribed Caesalpinioideae and is referred to informally as the mimosoid clade pending a forthcoming formal tribal and/or cladebased classification of the new Caesalpinioideae. We provide a key for subfamily identification, descriptions with diagnostic charactertistics for the subfamilies, figures illustrating their floral and fruit diversity, and lists of genera by subfamily. This new classification of Leguminosae represents a consensus view of the international legume systematics community; it invokes both compromise and practicality of use.

Hybridization and asymmetric introgression between Rhododendron eriocarpum and R. indicum on Yakushima Island, southwest Japan.

We examined natural hybridization between two morphologically and ecologically divergent species on Yakushima Island—the light-purple flowered Rhododendron eriocarpum native to seaside habitats and the red flowered R. indicum native to riverside habitats. By investigation of morphological traits and amplified fragment length polymorphisms (AFLP) we found that hybrid individuals morphologically and genetically intermediate between the two species grow mainly in the seaside areas of the island. The degree of morphological and genetic variation was different among the seaside hybrid populations. Although most pollinator species were exclusive to one of the two flower color groups, the halictine bees of Lasioglossum were observed in both the color types. The crucial interspecific incompatibility after pollination has not been previously described. Geographic distance between the populations is likely to be an important primary factor in bringing about natural hybridization and determining the degree of introgression between R. eriocarpum and R. indicum. The fact that hybrids occur mostly in the seaside area on Yakushima Island indicates that asymmetrical introgression occurs from R. indicum to R. eriocarpum. Alternatively, strong habitat-mediated selection from recurrent floods may prevent the hybrids from colonizing riverside habitats.

effects of logging and recruitment on community phylogenetic structure in 32 permanent forest plots of kampong thom, cambodia

Ecological communities including tropical rainforest are rapidly changing under various disturbances caused by increasing human activities. Recently in Cambodia, illegal logging and clear-felling for agriculture have been increasing. Here, we study the effects of logging, mortality and recruitment of plot trees on phylogenetic community structure in 32 plots in Kampong Thom, Cambodia. Each plot was 0.25 ha; 28 plots were established in primary evergreen forests and four were established in secondary dry deciduous forests. Measurements were made in 1998, 2000, 2004 and 2010, and logging, recruitment and mortality of each tree were recorded. We estimated phylogeny using rbcL and matK gene sequences and quantified phylogenetic α and β diversity. Within communities, logging decreased phylogenetic diversity, and increased overall phylogenetic clustering and terminal phylogenetic evenness. Between communities, logging increased phylogenetic similarity between evergreen and deciduous plots. On the other hand, recruitment had opposite effects both within and between communities. The observed patterns can be explained by environmental homogenization under logging. Logging is biased to particular species and larger diameter at breast height, and forest patrol has been effective in decreasing logging.

Development of a National Land-Use/Cover Dataset to Estimate Biodiversity and Ecosystem Services

Land-use/cover data are essential to estimate biodiversity and ecosystem services. Although many data and maps have been produced in Japan, there is significant variation in their characteristics, such as publication year, spatial resolution, and land-use/cover classification categories because the purposes of the data and maps differ (e.g., resource inventory). Unfortunately, little attention has so far been paid to biodiversity and ecosystem services, which require preparation of new land-use/cover data. First, we searched existing public national data in Japan published by government sectors and researchers and evaluated their characteristics. Second, we briefly reviewed user needs (e.g., temporal coverage, spatial resolution, and classification categories) to estimate biodiversity and ecosystem services. We then integrated the information, and we present herein a procedure to prepare a new national land-use/cover dataset from existing datasets to bridge the gaps between data producers and users by determining the temporal coverage needed to reveal historic change, determining the spatial resolution suitable for estimation, and setting classification categories needed for estimation. The resultant land-use/cover data could contribute significantly to research and management related to conservation of biodiversity and provision of ecosystem services.

Strategies to Observe and Assess Changes of Terrestrial Biodiversity in the Asia-Pacific Regions

Biodiversity loss is one of the most critical threats to global environments that has already transgressed planetary boundaries (Rockstrom et al. 2009). Indeed, nonlinear, often abrupt changes can drive unacceptable and irreversible deterioration. Rockstrom et al. (2009) claimed that earth’s system cannot sustain the current rate of biodiversity loss without significant erosion of resilience. To halt this biodiversity loss, global efforts to achieve “by 2010 a significant reduction of the current rate of biodiversity loss at the global, regional, and national level,” called the 2010 biodiversity targets, have been made since the agreement by the world’s governments in 2002. However, the latest data on the status and trends of biodiversity summarized in the third edition of Global Biodiversity Outlook (GBO-3) show that the target had not been met (Secretariat of the Convention on Biological Diversity 2010).

Goniothalamus flagellistylus Tagane & V. S. Dang (Annonaceae), a new species from Mt. Hon Ba, Vietnam

Abstract A new species, Goniothalamus flagellistylus Tagane & V. S. Dang, sp. nov. from Hon Ba Nature Reserve in Khanh Hoa Province, South Vietnam is described and illustrated. This species is most similar to Goniothalamus tortilipetalus M.R.Hend., but distinct in having 308–336 stamens (vs. ca. 170–260) and ca.120 carpels (vs. ca. 50–100) per flower, and Stigma and pseudostyles ca.8.5 mm (vs. 4–4.5 mm) long.

Homalium glandulosum (Salicaceae), a new species from Vu Quang National Park, North Central Vietnam

Abstract Homalium glandulosum Tagane & V. H. Nguyen, from Vu Quang National Park in northern Vietnam, is newly described. This species is characterized by distinct glands, often stalked, at the base of the lamina and along the margin of the stipules and bracteoles. Illustrations, DNA barcodes of the two regions of rbcL and matK, and a key to the species of Homalium in Vietnam are also provided.

Characterization and taxonomical note about Thai Erianthus germplasm collection: the morphology, flowering phenology and biogeography among E. procerus and three types of E. arundinaceus

Erianthus, one of the genus in Saccharum complex, is important genetic resources for sugarcane improvement. The morphology and flowering phenology of 108 accessions belonging to Erianthus procerus and three types of E. arundinaceus collected from throughout Thailand were compared. PCA analysis based on 22 characteristics clearly supported the separation of Type II and Type III of E. arundinaceus from E. procerus and Type I of E. arundinaceus according to their morphological characteristics, particularly their bud size, and the development of root primordia, which greatly affected axis I of the PCA analysis. E. procerus and Type I showed overlapping in many of their characteristics including their flowering periods. Flower characteristics such as rachis joint length, which were used for previous taxonomic classifications, were not available for the classification of the Thai samples because of the wide variation and overlapping among them. Most of these phenotype similarities and differences are considered to have developed convergently as a result of niche adaptation. Type II and III inhabit riverbanks and streambeds where floods occur frequently, while E. procerus and Type I mainly grow in non-flooding areas such as mountainous grassland, the edge of forests, and beside fields. All Thai Erianthus show unique geographic distributions in Thailand. In particular, the biogeographic boundary between Type II and Type III appeared to be located at the Isthmus of Kra. Although some types showed morphological similarities, reproductive isolation among the four groups seemed to be maintained by differentiation in geographic distribution, habitat preference, and flowering timing.

Flora of Nam Kading National Protected Area I: a new species of yellow-flowered Strobilanthes (Acanthaceae), S. namkadingensis

Abstract A new species of Acanthaceae, Strobilanthes namkadingensis Soulad. & Tagane from Nam Kading National Protected Area, Bolikhamxay Province, central Laos, is described and illustrated. It is characterized by long spicate inflorescences consisting of 6-32 flowers, yellow corolla, the absence of long white hairs on the bracts and 4–6 seeds per capsule. Three DNA barcode regions of the partial genes for the large sub-unit ribulose-1,5-bisphosphate carboxylase oxygenase (rbcL) and maturase K (matK) and internal transcribed spacers (ITS) are also provided.

Callicarpa bachmaensis Soejima & Tagane (Lamiaceae), a new species from Bach Ma National Park in Thua Thien Hue Province, Central Vietnam

Abstract A new species, Callicarpa bachmaensis Soejima & Tagane, sp. nov., is described and illustrated from Bach Ma National Park in Thua Thien Hue Province, Central Vietnam. This species has a characteristic liana habit, white corolla, and narrowly elliptic to narrowly lanceolate, entire, occasionally subequal leaves, by which it is clearly distinguished from the other previously known species of this genus.