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Featured researches published by Tetsukazu Yahara.


Journal of Plant Research | 1999

Chromosomal Evolution in the Genus Brachyscome (Asteraceae, Astereae): Statistical Tests Regarding Correlation Between Changes in Karyotype and Habit Using Phylogenetic Information

Kuniaki Watanabe; Tetsukazu Yahara; Tetsuo Denda; Keiko Kosuge

Brachyscome and 8 taxa of its allied genera, Australian Astereae. Statistical tests regarding correlations between changes in chromosome number, total chromosome length, mean chromosome length, karyotypic asymmetry and chromosome length heterogeneity and changes in habit were performed based on the matK molecular phylogenetic tree. The reductions in chromosome number and total chromosome length, and the increases in mean chromosome length, chromosome length heterogeneity and karyotypic asymmetry were found to be correlated with the change in habit from perennial to annual. A reduction in total chromosome length is favored to shorten the mitotic cell cycle and to produce smaller cells conducive to more rapid development of smaller annuals under the time-limited environment. Stepwise dysploidal reductions in chromosome number were achieved through the translocation of large chromosome segments onto other chromosomes, followed by the loss of a centromere, resulting in one fewer linkage group and one fewer haploid chromosome. The correlations between the dysploidal reduction in chromosome number and the increases in mean chromosome length, length heterogeneity and asymmetry in karyotype can be attributed to this mode of chromosomal change. These changes occurred independently in several different lineages in Brachyscome.


Taxon | 2017

A new subfamily classification of the leguminosae based on a taxonomically comprehensive phylogeny

Nasim Azani; Marielle Babineau; C. Donovan Bailey; Hannah Banks; ArianeR. Barbosa; Rafael Barbosa Pinto; JamesS. Boatwright; LeonardoM. Borges; Gillian K. Brown; Anne Bruneau; Elisa Candido; Domingos Cardoso; Kuo-Fang Chung; RuthP. Clark; Adilva deS. Conceição; Michael D. Crisp; Paloma Cubas; Alfonso Delgado-Salinas; KyleG. Dexter; JeffJ. Doyle; Jérôme Duminil; AshleyN. Egan; Manuel de la Estrella; MarcusJ. Falcão; DmitryA. Filatov; Ana Paula Fortuna-Perez; RenéeH. Fortunato; Edeline Gagnon; Peter Gasson; Juliana Gastaldello Rando

The classification of the legume family proposed here addresses the long-known non-monophyly of the traditionally recognised subfamily Caesalpinioideae, by recognising six robustly supported monophyletic subfamilies. This new classification uses as its framework the most comprehensive phylogenetic analyses of legumes to date, based on plastid matK gene sequences, and including near-complete sampling of genera (698 of the currently recognised 765 genera) and ca. 20% (3696) of known species. The matK gene region has been the most widely sequenced across the legumes, and in most legume lineages, this gene region is sufficiently variable to yield well-supported clades. This analysis resolves the same major clades as in other phylogenies of whole plastid and nuclear gene sets (with much sparser taxon sampling). Our analysis improves upon previous studies that have used large phylogenies of the Leguminosae for addressing evolutionary questions, because it maximises generic sampling and provides a phylogenetic tree that is based on a fully curated set of sequences that are vouchered and taxonomically validated. The phylogenetic trees obtained and the underlying data are available to browse and download, facilitating subsequent analyses that require evolutionary trees. Here we propose a new community-endorsed classification of the family that reflects the phylogenetic structure that is consistently resolved and recognises six subfamilies in Leguminosae: a recircumscribed Caesalpinioideae DC., Cercidoideae Legume Phylogeny Working Group (stat. nov.), Detarioideae Burmeist., Dialioideae Legume Phylogeny Working Group (stat. nov.), Duparquetioideae Legume Phylogeny Working Group (stat. nov.), and Papilionoideae DC. The traditionally recognised subfamily Mimosoideae is a distinct clade nested within the recircumscribed Caesalpinioideae and is referred to informally as the mimosoid clade pending a forthcoming formal tribal and/or cladebased classification of the new Caesalpinioideae. We provide a key for subfamily identification, descriptions with diagnostic charactertistics for the subfamilies, figures illustrating their floral and fruit diversity, and lists of genera by subfamily. This new classification of Leguminosae represents a consensus view of the international legume systematics community; it invokes both compromise and practicality of use.


American Journal of Botany | 1998

EFFECTS OF VARIATION IN FLOWER NUMBER ON POLLINATOR VISITS IN CIRSIUM PURPURATUM (ASTERACEAE)

Kazuharu Ohashi; Tetsukazu Yahara

We examined the functional relationships between floral display and two types of bumble bee response, the visitation rate per plant and the number of flowers visited on a plant, in an artificially arranged field population of Cirsium purpuratum. To reduce the variance in data, we collected data for each day separately and adopted a Latin square design in selecting the focal plants within a day. We then tested several types of regressions to each set of data to find the best-fitting line accounting for the observed relationship between pollinator response and display size. We found that the visitation rate of bumble bees per plant was a decelerating function of floral display, and that the number of flowering heads visited on a plant increased linearly with display size. Predicted from the above two functions, the visitation rate per head was independent of floral display and nearly constant within each day. Our results suggest that conventional methods in collecting and analyzing data on pollinator visitation may yield large variance in data derived from temporal and spatial heterogeneity and that improved methods employed here are effective in reducing the variance and estimating patterns of pollinator response to floral display more accurately.


Chromosoma | 2002

Trends in site-number change of rDNA loci during polyploid evolution in Sanguisorba (Rosaceae)

Misako Mishima; Nobuko Ohmido; Kiichi Fukui; Tetsukazu Yahara

Abstract. To elucidate the evolutionary dynamics of rDNA site number in polyploid plants, we determined 5S and 18S-5.8S-26S rDNA sites for ten species of Sanguisorba (2n=14, 28, 56) and a single species of each of three outgroup genera, Agrimonia (2n=28), Rosa (2n=14), and Rubus (2n=14) by the fluorescence in situ hybridization (FISH) method. We also estimated phylogenetic relationships among these species using matK chloroplast DNA (cpDNA) sequences, and reconstructed the evolutionary history of rDNA site number based on the maximum parsimony method. The 2n=14 and 2n=28 plants of all genera except Rosa carried two 5S rDNA sites, whereas Rosa and 2n=56 plants carried four sites. The 2n=14 plants had two 18S-5.8S-26S rDNA sites, whereas Sanguisorbaannua and 2n=28 plants had four or six sites. Phylogenetic analysis showed that polyploidization from 2n=14 to 2n=28 has occurred once or three times in Sanguisorba and Agrimonia. The 5S rDNA sites duplicated during each ancestral polyploidization were evidently lost after each polyploidization. However, the duplicated 18S-5.8S-26S rDNA sites were all conserved after each polyploidization. Thus, the duplicated 5S rDNA sites tend to have been eliminated, whereas those of 18S-5.8S-26S rDNA tend to have been conserved in Sanguisorba. In the most parsimonious hypothesis, 2n=14 in S. annua is a secondary, putatively dysploid state, reduced from 2n=28.


Evolution | 2010

Evolutionary biology in biodiversity science, conservation, and policy: A call to action

Andrew P. Hendry; Lúcia G. Lohmann; Elena Conti; Joel Cracraft; Keith A. Crandall; Daniel P. Faith; Christoph Häuser; Carlos Alfredo Joly; Kazuhiro Kogure; Anne Larigauderie; Susana Magallón; Craig Moritz; Simon Tillier; Rafael Zardoya; Anne Hélène Prieur-Richard; Bruno A. Walther; Tetsukazu Yahara; Michael J. Donoghue

Evolutionary biologists have long endeavored to document how many species exist on Earth, to understand the processes by which biodiversity waxes and wanes, to document and interpret spatial patterns of biodiversity, and to infer evolutionary relationships. Despite the great potential of this knowledge to improve biodiversity science, conservation, and policy, evolutionary biologists have generally devoted limited attention to these broader implications. Likewise, many workers in biodiversity science have underappreciated the fundamental relevance of evolutionary biology. The aim of this article is to summarize and illustrate some ways in which evolutionary biology is directly relevant. We do so in the context of four broad areas: (1) discovering and documenting biodiversity, (2) understanding the causes of diversification, (3) evaluating evolutionary responses to human disturbances, and (4) implications for ecological communities, ecosystems, and humans. We also introduce bioGENESIS, a new project within DIVERSITAS launched to explore the potential practical contributions of evolutionary biology. In addition to fostering the integration of evolutionary thinking into biodiversity science, bioGENESIS provides practical recommendations to policy makers for incorporating evolutionary perspectives into biodiversity agendas and conservation. We solicit your involvement in developing innovative ways of using evolutionary biology to better comprehend and stem the loss of biodiversity.


Journal of Plant Research | 1998

Floral scents of hawkmoth-pollinated flowers in Japan

Takashi Miyake; Ryohei Yamaoka; Tetsukazu Yahara

Similarity among the floral scents of hawkmoth-pollinated plants was investigated with headspace samplings. Six of seven plant species belonging to different families were found to be rich in isoprenoids, among which linalool was the most common compound. Linalool showed rhythmicity with a nocturnal increase inLonicera japonica. These findings suggest that linalool is a common attractant for nocturnal hawkmoths. However, the composition of other isoprenoids, benzenoids and fatty acid derivatives varied markedly among the plant species examined. There was a significant correlation between species composition of flower-visiting hawkmoths and specific floral scents, suggesting that attractiveness to each hawkmoth species is dependent upon floral scent.


American Journal of Botany | 1997

Effects of virus infection and growth irradiance on fitness components and photosynthetic properties of Eupatorium makinoi (Compositae).

Sachiko Funayama; Kouki Hikosaka; Tetsukazu Yahara

We examined the effects of geminivirus infection on fitness components and on photosynthetic properties of the host plant, Eupatorium makinoi, grown at two irradiance levels in a natural-light greenhouse. Under the low-light condition (13% full sunlight), more than a half of the infected plants died during the 9-mo experiment, while most of uninfected plants survived. Growth rate was also lowered by infection. At high light (50% full sunlight), by contrast, virus infection did not cause mortality despite slight decrease in growth rate. Flowering occurred only at high light, and reproductive outputs of the plants were markedly reduced by the infection. Infected leaves had distinct yellow variegations and, when compared with uninfected leaves, they showed (1) comparable light-saturated photosynthetic rate per unit area, but (2) lower initial slope of light-response curve of photosynthesis on an incident irradiance basis. The lower initial slope was mainly due to reduction of light-harvesting chlorophyll-protein complexes in the variegated parts. Since the differences in plant performance, depending both on infection and on growth irradiance, were largely explained by the differences in growth rate and/or plant size, the reduced photosynthetic production in the infected plants would be a major factor explaining the inferior performance of the host plants.


American Journal of Botany | 1999

Trade-offs between flower number and investment to a flower in selfing and outcrossing varieties of Impatiens hypophylla (Balsaminaceae).

Hisashi Sato; Tetsukazu Yahara

Floral resource allocation was compared on a whole-plant basis between two varieties of Impatiens hypophylla that differ in flower size. There were significant negative correlations between flower number and investments to a flower at both the within-population and between-variety levels. In individual flowers, var. hypophylla with larger flowers invested significantly more resources to male and pollinator-attractive functions, whereas investments to female function did not differ between the varieties. In experimental populations placed in the field, pollinators preferred the larger flowers of var. hypophylla even within the same habitat of var. microhypophylla, which has smaller flowers. There was a significant lack of observed heterozygosity only in var. microhypophylla. Thus, the outcrossing variety had more attractive but fewer flowers, while the selfing variety had less attractive but more abundant flowers.


Evolution | 1992

Graphical analysis of mating system evolution in plants

Tetsukazu Yahara

The calculations were speeded by setting up tables of W(i, j) and Pti, j; k) beforehand. Most of the results were produced by a program written in Pascal; as a check on rounding errors, some calculations were repeated using a Mathematica notebook (Wolfram, 1988), with increased precision. There were no discrepancies. The threshold migration rate was found by a binary search. The migration rate started at the theoretical prediction, 1/(2en). Two values, m+ and m_, were then chosen around this value, such that the new combination was fixed for the upper value, but not the lower. m., = (m+ + m_)I2, was then tried; if the new combination was fixed, m ; was replaced by m a; otherwise ms replaced m_. This continued until (m+ m_) < (m_ + m+)/40, guaranteeing an estimate within 5% of the true value. The criterion for ending a run was that allele frequency had changed by less than 1O-4 (m+ m_) for 10 consecutive generations: this allows for the slower evolution of the system when m and s are low. The new combination was deemed to have fixed ifthe final allele frequency was above 0.9. These criteria are similar to those used by Crow et al. (1990), but give more accurate results for large numbers ofloci and low migration rates. Numerical values of the critical migration rate, which were kindly supplied by Crow et al., agree with the simulations described here, to within the margin of error of the search algorithms. NOTES AND COMMENTS


Oecologia | 1993

Effects of virus infection on demographic traits of an agamospermous population of Eupatorium chinense (Asteraceae)

Tetsukazu Yahara; Ken Oyama

There are few studies of the interaction between wild plants and viruses. In this paper, the incidence of a geminivirus (tobacco leaf curl virus, TLCV) infection, and its effects on mortality, growth and reproduction of its host-plant, Eupatorium chinense, are reported. A total of 221 plants of an agamospermous population of E. chinense were chosen and their demographic behaviour followed over 2 years (1991–1992). The proportion of infected plants differed between years, with fewer plants infected in 1991 than in 1992. Under low virus incidence (35.3% in 1991), infection was significantly associated with taller plants (>80 cm). However, when the incidence of infected plants increased by almost two times (69.1%) in 1992, this tendency disappeared and small plants were also infected. Virus infection had significant effects on mortality of agamospermous plants. Almost half of the initial number of marked plants (n=221) died after 1 year of observations. Of those dead plants (n=105), 86 plants (82%) were infected in 1991, indicating that virus infection was an important, but not the sole cause of mortality. In 1992, 116 plants were alive, and of these, 40% were infected in 1991, indicating that some infected plants survived 1 year. Agamospermous plants were classified in three groups according to the extent of virus infection (plants infected in 2 years, infected in 1 year and uninfected plants) to detect the effect of virus infection on growth of plants of E. chinense. Infected plants had significantly lower growth rates than healthy plants. Infected plants also produced significantly fewer seeds than uninfected plants. Virus infection, however, had no significant effect on the probability of reproduction in plants of E. chinense, suggesting that infected plants may reproduce but with a lower seed output. In this study, we showed that virus infection may have a strong effect on demographic traits and, as a consequence, on fitness components of plants of E. chinense. These effects were higher than those sometimes observed in other plant-herbivore or plant-pathogen interactions.

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Akiyo Naiki

University of the Ryukyus

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