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Featured researches published by Simone Brandt.


Nature Methods | 2014

Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry

Charlotte Giesen; Hao A. O. Wang; Denis Schapiro; Nevena Zivanovic; Bodo Hattendorf; Peter J. Schüffler; Daniel Grolimund; Joachim M. Buhmann; Simone Brandt; Zsuzsanna Varga; Peter Wild; Detlef Günther; Bernd Bodenmiller

Mass cytometry enables high-dimensional, single-cell analysis of cell type and state. In mass cytometry, rare earth metals are used as reporters on antibodies. Analysis of metal abundances using the mass cytometer allows determination of marker expression in individual cells. Mass cytometry has previously been applied only to cell suspensions. To gain spatial information, we have coupled immunohistochemical and immunocytochemical methods with high-resolution laser ablation to CyTOF mass cytometry. This approach enables the simultaneous imaging of 32 proteins and protein modifications at subcellular resolution; with the availability of additional isotopes, measurement of over 100 markers will be possible. We applied imaging mass cytometry to human breast cancer samples, allowing delineation of cell subpopulations and cell-cell interactions and highlighting tumor heterogeneity. Imaging mass cytometry complements existing imaging approaches. It will enable basic studies of tissue heterogeneity and function and support the transition of medicine toward individualized molecularly targeted diagnosis and therapies.


Physics Letters B | 1978

A study of jets in electron positron annihilation into hadrons in the energy range 3.1 to 9.5 GeV

Christoph Berger; R. Maschuw; Simone Brandt; W. Lackas; G.G. Winter; H. Meyer; H. C. Dehne; G. Flugge; H. Kapitza; L. Criegee; G. Zech; L. Boesten; J. Burger; E. Lehmann; G. Horlitz; V. Blobel; A. Backer; A. F. Garfinkel; E. Hackmack; K. Derikum; S. Wolff; G. Wetjen; W. Zimmermann; H. Spitzer; H. Daumann; R. Devenish; Th. Kahl; W. Lührsen; M. Rossler; G. Franke

Abstract From an analysis of data taken with the detector PLUTO and the DORIS storage rings we have obtained evidence for jet structure in e + e − annihilation with hadrons. Results for mean sphericity, mean thrust, the angular dependence of the jet axis and for 〈 p t 〉 and 〈 p ∥ 〉 with respect to the jet axis are presented. At 9.4 GeV we also discuss the angular dependence of the charged and neutral deposited energy with respect to the jet axis.


Immunology | 2009

Plasma cell toll-like receptor (TLR) expression differs from that of B cells, and plasma cell TLR triggering enhances immunoglobulin production

Marcus Dorner; Simone Brandt; Marianne Tinguely; Franziska Zucol; Jean-Pierre Bourquin; Christoph Berger; Michele Bernasconi; Roberto F. Speck; David Nadal

Toll‐like receptors (TLRs) are key receptors of the innate immune system and show cell subset‐specific expression. We investigated the messenger RNA (mRNA) expression of TLR genes in human haematopoietic stem cells (HSC), in naïve B cells, in memory B cells, in plasma cells from palatine tonsils and in plasma cells from peripheral blood. HSC and plasma cells showed unrestricted expression of TLR1–TLR9, in contrast to B cells which lacked TLR3, TLR4 and TLR8 but expressed mRNA of all other TLRs. We demonstrated, for the first time, that TLR triggering of terminally differentiated plasma cells augments immunoglobulin production. Thus, boosting the immediate antibody response by plasma cells upon pathogen recognition may point to a novel role of TLRs.


Physics Letters B | 1979

Jet analysis of the ϒ(9.46) decay into charged hadrons

Ch. Berger; W. Lackas; F. Raupach; Wolfgang Wagner; Gideon Alexander; L. Criegee; H. C. Dehne; K. Derikum; R. Devenish; G. Flügge; G. Franke; Ch. Gerke; E. Hackmack; P. Harms; G. Horlitz; Th. Kahl; G. Knies; E. Lehmann; B. Neumann; R.L. Thompson; U. Timm; P. Waloschek; G.G. Winter; S. Wolff; W. Zimmermann; O. Achterberg; V. Blobel; L. Boesten; H. Daumann; A. F. Garfinkel

Abstract The direct decay into four and more charged particles of the ϒ(9.46) formed in e+e− collisions is analysed for hadron-jet configurations. The results are compared with the expectations of phase space, a q q two-jet model and a QCD three-gluon decay mechanism. Out of these three models, the three-gluon decay describes best the data.


Journal of Clinical Investigation | 2015

A versatile modular vector system for rapid combinatorial mammalian genetics

Joachim Albers; Claudia Danzer; Markus Rechsteiner; Holger Lehmann; Laura P. Brandt; Tomas Hejhal; Antonella Catalano; Philipp Busenhart; Ana Filipa Gonçalves; Simone Brandt; Peter Bode; Beata Bode‐Lesniewska; Peter Wild; Ian J. Frew

Here, we describe the multiple lentiviral expression (MuLE) system that allows multiple genetic alterations to be introduced simultaneously into mammalian cells. We created a toolbox of MuLE vectors that constitute a flexible, modular system for the rapid engineering of complex polycistronic lentiviruses, allowing combinatorial gene overexpression, gene knockdown, Cre-mediated gene deletion, or CRISPR/Cas9-mediated (where CRISPR indicates clustered regularly interspaced short palindromic repeats) gene mutation, together with expression of fluorescent or enzymatic reporters for cellular assays and animal imaging. Examples of tumor engineering were used to illustrate the speed and versatility of performing combinatorial genetics using the MuLE system. By transducing cultured primary mouse cells with single MuLE lentiviruses, we engineered tumors containing up to 5 different genetic alterations, identified genetic dependencies of molecularly defined tumors, conducted genetic interaction screens, and induced the simultaneous CRISPR/Cas9-mediated knockout of 3 tumor-suppressor genes. Intramuscular injection of MuLE viruses expressing oncogenic H-RasG12V together with combinations of knockdowns of the tumor suppressors cyclin-dependent kinase inhibitor 2A (Cdkn2a), transformation-related protein 53 (Trp53), and phosphatase and tensin homolog (Pten) allowed the generation of 3 murine sarcoma models, demonstrating that genetically defined autochthonous tumors can be rapidly generated and quantitatively monitored via direct injection of polycistronic MuLE lentiviruses into mouse tissues. Together, our results demonstrate that the MuLE system provides genetic power for the systematic investigation of the molecular mechanisms that underlie human diseases.


Nuclear Medicine and Biology | 2015

Folate receptor-targeted radionuclide therapy: preclinical investigation of anti-tumor effects and potential radionephropathy

Stephanie Haller; Josefine Reber; Simone Brandt; Peter Bernhardt; Viola Groehn; Roger Schibli; Cristina Müller

INTRODUCTIONnApplication of therapeutic folate radioconjugates is a promising option for the treatment of folate receptor (FR)-positive tumors, although high uptake of radiofolates in the kidneys remains a critical issue. Recently, it was shown that enhancing the blood circulation of radiofolates results in increased tumor uptake and reduced retention of radioactivity in the kidneys. In this study, we investigated and compared the anti-tumor effects and potential long-term damage to the kidneys after application of an albumin-binding ((177)Lu-cm09), and a conventional ((177)Lu-EC0800) folate radioconjugate.nnnMETHODSnIn vivo studies were performed with KB tumor-bearing nude mice. (177)Lu-EC0800 and (177)Lu-cm09 were applied at variable quantities (10-30 MBq/mouse), and the tumor growth was monitored over time. Mice without tumors were injected with the same radiofolates and investigated over eight months by determination of creatinine and blood urea nitrogen plasma levels and by measuring renal uptake of (99m)Tc-DMSA using SPECT. At the study end, the morphological changes were examined on renal tissue sections using variable staining methods.nnnRESULTSnCompared to untreated controls, dose-dependent tumor growth inhibition and prolonged survival was observed in all treated mice. In line with the resulting absorbed dose, the treatment was more effective with (177)Lu-cm09 than with (177)Lu-EC0800, enabling complete tumor remission after application of ≥20MBq (≥28Gy). Application of radiofolates with an absorbed renal dose ≥23 Gy showed increased levels of renal plasma parameters and reduced renal uptake of (99m)Tc-DSMA. Morphological changes observed on tissue sections confirmed radionephropathy of variable stages.nnnCONCLUSIONSn(177)Lu-cm09 showed more favorable anti-tumor effects and significantly less damage to the kidneys compared to (177)Lu-EC0800 as was expected based on improved tumor-to-kidney ratios. It was demonstrated that enhancing the blood circulation time of radiofolates was favorable regarding the risk-benefit profile of a therapeutic application. These results hold promise for future translation of the albumin-binder concept to the clinics, potentially enabling FR-targeted radionuclide therapy in patients.


The Journal of Pathology | 2014

KPNA2 is overexpressed in human and mouse endometrial cancers and promotes cellular proliferation

Kristian Ikenberg; Nadejda Valtcheva; Simone Brandt; Qing Zhong; Christine Wong; Aurelia Noske; Markus Rechsteiner; Jan H. Rueschoff; Rosmarie Caduff; Athanassios Dellas; Ellen C. Obermann; Daniel Fink; Thomas J. Fuchs; Wilhelm Krek; Holger Moch; Ian J. Frew; Peter Wild

Endometrial cancer is the most frequently occurring malignancy of the female genital tract in Western countries. Although in many cases surgically curable, about 30% of the tumours represent an aggressive and untreatable disease. In an attempt to establish a reliable prognostic marker for endometrial carcinomas disregarding their histological diversity, we investigated the expression of KPNA2, a mediator of nucleocytoplasmic transport, and other cell proliferation‐associated proteins and their correlation with cancer progression. We analysed patient tissue microarrays (TMAs) assembled from 527 endometrial cancer tissue specimens and uterus samples from a Trp53 knockout mouse model of endometrial cancer. Our data show that KPNA2 expression was significantly up‐regulated in human endometrial carcinomas and associated with higher tumour grade (p = 0.026), higher FIGO stage (p = 0.027), p53 overexpression (p < 0.001), activation of the PI3K/AKT pathway, and epithelial–mesenchymal transition. Increased nuclear KPNA2 immunoreactivity was identified as a novel predictor of overall survival, independent of well‐established prognostic factors in Cox regression analyses (hazard ratio 1.7, 95% CI 1.13–2.56, p = 0.01). No significant association between KPNA2 expression and endometrial cancer subtype was detected. In the mouse model, KPNA2 showed increased expression levels from precancerous (EmgD, EIC) to far‐advanced invasive lesions. We further investigated the cell proliferation capacity after siRNA‐mediated KPNA2 knockdown in the human endometrial cancer cell line MFE‐296. KPNA2 silencing led to decreased proliferation of the cancer cells, suggesting interplay of the protein with the cell cycle. Taken together, increased expression of KPNA2 is an independent prognostic marker for poor survival. The mechanism of enhanced nucleocytoplasmic transport by KPNA2 overexpression seems a common event in aggressive cancers since we have shown a significant correlation of KPNA2 expression and tumour aggressiveness in a large variety of other solid tumour entities. Introducing KPNA2 immunohistochemistry in routine diagnostics may allow for the identification of patients who need more aggressive treatment regimens. Copyright


Modern Pathology | 2014

Cancer testis antigen expression in testicular germ cell tumorigenesis.

Peter Bode; Andrea Thielken; Simone Brandt; André Barghorn; Bernd Lohe; Alexander Knuth; Holger Moch

Cancer testis antigens are encoded by germ line-associated genes that are present in normal germ cells of testis and ovary but not in differentiated tissues. Their expression in various human cancer types has been interpreted as ‘re-expression’ or as intratumoral progenitor cell signature. Cancer testis antigen expression patterns have not yet been studied in germ cell tumorigenesis with specific emphasis on intratubular germ cell neoplasia unclassified as a precursor lesion for testicular germ cell tumors. Immunohistochemistry was used to study MAGEA3, MAGEA4, MAGEC1, GAGE1 and CTAG1B expression in 325 primary testicular germ cell tumors, including 94 mixed germ cell tumors. Seminomatous and non-seminomatous components were separately arranged and evaluated on tissue microarrays. Spermatogonia in the normal testis were positive, whereas intratubular germ cell neoplasia unclassified was negative for all five CT antigens. Cancer testis antigen expression was only found in 3% (CTAG1B), 10% (GAGE1, MAGEA4), 33% (MAGEA3) and 40% (MAGEC1) of classic seminoma but not in non-seminomatous testicular germ cell tumors. In contrast, all spermatocytic seminomas were positive for cancer testis antigens. These data are consistent with a different cell origin in spermatocytic seminoma compared with classic seminoma and support a progression model with loss of cancer testis antigens in early tumorigenesis of testicular germ cell tumors and later re-expression in a subset of seminomas.


European Physical Journal A | 1980

Topology of the Υ-decay

Ch. Berger; W. Lackas; F. Raupach; Gideon Alexander; J. Bürger; L. Criegee; H. C. Dehne; R. Devenish; G. Flügge; G. Franke; Ch. Gerke; G. Knies; E. Lehmann; B. Stella; U. Timm; W. Wagner; Waloschek; G.G. Winter; W. Zimmermann; O. Achterberg; V. Blobel; L. Boesten; H. Kapitza; B. Koppitz; W. Lührsen; H. Spitzer; R. van Staa; A. Bäcker; Simone Brandt; K. Derikum

Multihadron events resulting frome+e− annihilation at the Υ-resonance are analysed with respect to lowest order QCD which predicts a dominant Υ decay into three vector gluons. Smearing effects due to the gluon fragmentation are so large, however, that no clear 3-jet structure or flatness is expected in the hadron final state. Instead, Monte Carlo simulations predict event structures with thrust and triplicity distributions distinctly different from those of two quark-jet and of phase space like decay mechanisms. The data are in perfect agreement with the 3-vector gluon decay as predicted by QCD and exclude dominantly phase space like or 2-quark jet decays. Also, the decay into scalar gluons is excluded by the data. An upper limit for the Υ-decay into one photon and two gluons is obtained.


Nature Communications | 2017

Evidence of renal angiomyolipoma neoplastic stem cells arising from renal epithelial cells

Ana Filipa Gonçalves; Mojca Adlesic; Simone Brandt; Tomas Hejhal; Sabine Harlander; Lukas Sommer; Olga Shakhova; Peter Wild; Ian J. Frew

Renal angiomyolipomas (AML) contain an admixture of clonal tumour cells with features of several different mesenchymal lineages, implying the existence of an unidentified AML neoplastic stem cell. Biallelic inactivation of TSC2 or TSC1 is believed to represent the driving event in these tumours. Here we show that TSC2 knockdown transforms senescence-resistant cultured mouse and human renal epithelial cells into neoplastic stem cells that serially propagate renal AML-like tumours in mice. mTOR inhibitory therapy of mouse AML allografts mimics the clinical responses of human renal AMLs. Deletion of Tsc1 in mouse renal epithelia causes differentiation in vivo into cells expressing characteristic AML markers. Human renal AML and a renal AML cell line express proximal tubule markers. We describe the first mouse models of renal AML and provide evidence that these mesenchymal tumours originate from renal proximal tubule epithelial cells, uncovering an unexpected pathological differentiation plasticity of the proximal tubule.Renal angiomyolipomas (AML) contain a mix of clonal tumour cells. Here, through reverse tumour engineering experiments, mouse genetics and analyses of human AML tumours, the authors provide evidence that these mesenchymal tumours originate from renal proximal tubule epithelial cells.

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V. Blobel

University of Hamburg

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W. Lackas

RWTH Aachen University

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