Songbai Zhang

Genome Sequence of Pyrethroid-Degrading Bacterium Rhodopseudomonas palustris Strain JSC-3b

ABSTRACT Rhodopseudomonas palustris strain JSC-3b is a facultative, thermophilic bacterium, which was isolated from water in a canal adjacent to a vegetable field. Strain JSC-3b biodegrades several varieties of pyrethroid residues effectively through cometabolic pathways. Here, we present the genome sequence of this biodegrader.

Isolation of Rhp-PSP, a member of YER057c/YjgF/UK114 protein family with antiviral properties, from the photosynthetic bacterium Rhodopseudomonas palustris strain JSC-3b

Rhodopseudomonas palustris strain JSC-3b isolated from a water canal adjacent to a vegetable field produces a protein that was purified by bioactivity-guided fractionation based on ammonium sulfate precipitation, ion-exchange absorption and size exclusion. The protein was further identified as an endoribonuclease L-PSP (Liver-Perchloric acid-soluble protein) by shotgun mass spectrometry analysis and gene identification, and it is member of YER057c/YjgF/UK114 protein family. Herein, this protein is designated Rhp-PSP. Rhp-PSP exhibited significant inhibitory activities against tobacco mosaic virus (TMV) in vivo and in vitro. To our knowledge, this represents the first report on the antiviral activity of a protein of the YER057c/YjgF/UK114 family and also the first antiviral protein isolated from R. palustris. Our research provides insight into the potential of photosynthetic bacterial resources in biological control of plant virus diseases and sustainable agriculture.

Photosynthetic bacterium Rhodopseudomonas palustris GJ-22 induces systemic resistance against viruses

Photosynthetic bacteria (PSB) have been extensively used in agriculture to promote plant growth and to improve crop quality. Their potential application in plant disease management, however, is largely overlooked. In this study, the PSB strain Rhodopseudomonas palustris GJ‐22 was investigated for its ability to induce resistance against a plant virus while promoting plant growth. In the field, a foliar spray of GJ‐22 suspension protected tobacco plants against tobacco mosaic virus (TMV). Under axenic conditions, GJ‐22 colonized the plant phyllosphere and induced resistance against TMV. Additionally, GJ‐22 produced two phytohormones, indole‐3‐acetic acid and 5‐aminolevulinic acid, which promote growth and germination in tobacco. Furthermore, GJ‐22‐inoculated plants elevated their immune response under subsequent TMV infection. This research may give rise to a novel biological agent with a dual function in disease management while promoting plant growth.

Biodegradation of fenpropathrin by a novel Rhodopseudomonas sp. strain PSB07-8

The aim of our study was to isolate a fenpropathrin-degrading bacterial strain and to determine its effectiveness in bioremediating fenpropathrin-contaminated soil in the laboratory. We isolated a bacterial strain from soils and named it as PSB07-8, and showed that this organism was able to degrade pyrethroid pesticide fenpropathrin. The organism was identified as a strain of Rhodopseudomonassp.The strain PSB07-8 degraded fenpropathrin in a co-metabolic way, and the optimal condition of degradation was at temperature of 30°C and pH value of 7. Moreover, the strain PSB07-8 could effectively degrade cypermethrin and bipthenthrin, but only slightly for deltemethrin, cyfluthrin and esfenralerate. We found that the degradation rate was negatively correlated with the fenpropathrin concentration in a certain range. In addition, our soil degradation test showed that in sterilised soils with 20 mg/l or 40 mg/l fenpropathrin, the strain PSB07-8 could complete 100% or achieve 44.7% of fenpropathrin degradation in 15 days. To our best knowledge, this is the first report of a strain of genus Rhodopseudomonas with an ability of degrading fenpropathrin in soil.

Cloning and characterization of a pyrethroid pesticide decomposing esterase gene, Est3385 , from Rhodopseudomonas palustris PSB-S

Full length open reading frame of pyrethroid detoxification gene, Est3385, contains 963 nucleotides. This gene was identified and cloned based on the genome sequence of Rhodopseudomonas palustris PSB-S available at the GneBank. The predicted amino acid sequence of Est3385 shared moderate identities (30–46%) with the known homologous esterases. Phylogenetic analysis revealed that Est3385 was a member in the esterase family I. Recombinant Est3385 was heterologous expressed in E. coli, purified and characterized for its substrate specificity, kinetics and stability under various conditions. The optimal temperature and pH for Est3385 were 35 °C and 6.0, respectively. This enzyme could detoxify various pyrethroid pesticides and degrade the optimal substrate fenpropathrin with a Km and Vmax value of 0.734 ± 0.013 mmol·l−1 and 0.918 ± 0.025 U·µg−1, respectively. No cofactor was found to affect Est3385 activity but substantial reduction of enzymatic activity was observed when metal ions were applied. Taken together, a new pyrethroid degradation esterase was identified and characterized. Modification of Est3385 with protein engineering toolsets should enhance its potential for field application to reduce the pesticide residue from agroecosystems.