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Featured researches published by Soumik BasuRay.


PLOS ONE | 2010

Rab7 Mutants Associated with Charcot-Marie-Tooth Disease Exhibit Enhanced NGF-Stimulated Signaling

Soumik BasuRay; Sanchita Mukherjee; Elsa Romero; Michael C. Wilson; Angela Wandinger-Ness

Missense mutants in the late endosomal Rab7 GTPase cause the autosomal dominant peripheral neuropathy Charcot-Marie-Tooth disease type 2B (CMT2B). As yet, the pathological mechanisms connecting mutant Rab7 protein expression to altered neuronal function are undefined. Here, we analyze the effects Rab7 CMT2B mutants on nerve growth factor (NGF) dependent intracellular signaling in PC12 cells. The nerve growth factor receptor TrkA interacted similarly with Rab7 wild-type and CMT2B mutant proteins, but the mutant proteins significantly enhanced TrkA phosphorylation in response to brief NGF stimulation. Two downstream signaling pathways (Erk1/2 and Akt) that are directly activated in response to phospho-TrkA were differentially affected. Akt signaling, arising in response to activated TrkA at the plasma membrane was unaffected. However Erk1/2 phosphorylation, triggered on signaling endosomes, was increased. Cytoplasmic phospho-Erk1/2 persisted at elevated levels relative to control samples for up to 24 h following NGF stimulation. Nuclear shuttling of phospho Erk1/2, which is required to induce MAPK phosphatase expression and down regulate signaling, was greatly reduced by the Rab7 CMT2B mutants and explains the previously reported inhibition in PC12 neurite outgrowth. In conclusion, the data demonstrate a mechanistic link between Rab7 CMT2B mutants and altered TrkA and Erk1/2 signaling from endosomes.


Journal of Biological Chemistry | 2013

Rab7 Mutants Associated with Charcot-Marie-Tooth Disease Cause Delayed Growth Factor Receptor Transport and Altered Endosomal and Nuclear Signaling

Soumik BasuRay; Sanchita Mukherjee; Elsa Romero; Matthew N.J. Seaman; Angela Wandinger-Ness

Background: Four Rab7 GTPase missense mutants cause autosomal dominant peripheral neuropathy Charcot-Marie-Tooth type 2B (CMT2B) disease. Results: Rab7 CMT2B mutants impair epidermal growth factor receptor degradation, alter endosomal MAPK signaling, and down-regulate c-fos and Egr-1 expression. Conclusion: Impaired endosomal trafficking alters transcriptional regulation that is important for axonal survival. Significance: Rab7 CMT2B mutants affect a common pathway in CMT2B disease pathogenesis. Rab7 belongs to the Ras superfamily of small GTPases and is a master regulator of early to late endocytic membrane transport. Four missense mutations in the late endosomal Rab7 GTPase (L129F, K157N, N161T, and V162M) cause the autosomal dominant peripheral neuropathy Charcot-Marie-Tooth type 2B (CMT2B) disease. As yet, the pathological mechanisms connecting mutant Rab7 protein expression to altered neuronal function are undefined. Here, we analyze the effects of Rab7 CMT2B mutants on epidermal growth factor (EGF)-dependent intracellular signaling and trafficking. Three different cell lines expressing Rab7 CMT2B mutants and stimulated with EGF exhibited delayed trafficking of EGF to LAMP1-positive late endosomes and lysosomes and slowed EGF receptor (EGFR) degradation. Expression of all Rab7 CMT2B mutants altered the Rab7 activation cycle, leading to enhanced and prolonged EGFR signaling as well as variable increases in p38 and ERK1/2 activation. However, due to reduced nuclear translocation of p38 and ERK1/2, the downstream nuclear activation of Elk-1 was decreased along with the expression of immediate early genes like c-fos and Egr-1 by the disease mutants. In conclusion, our results demonstrate that Rab7 CMT2B mutants impair growth factor receptor trafficking and, in turn, alter p38 and ERK1/2 signaling from perinuclear, clustered signaling endosomes. The resulting down-regulation of EGFR-dependent nuclear transcription that is crucial for normal axon outgrowth and peripheral innervation offers a crucial new mechanistic insight into disease pathogenesis that is relevant to other neurodegenerative diseases.


Analytical Biochemistry | 2013

Rapid parallel flow cytometry assays of active GTPases using effector beads

Tione Buranda; Soumik BasuRay; Scarlett Swanson; Jacob O. Agola; Virginie Bondu; Angela Wandinger-Ness

We describe a rapid assay for measuring the cellular activity of small guanine triphosphatases (GTPases) in response to a specific stimulus. Effector-functionalized beads are used to quantify in parallel multiple GTP-bound GTPases in the same cell lysate by flow cytometry. In a biologically relevant example, five different Ras family GTPases are shown for the first time to be involved in a concerted signaling cascade downstream of receptor ligation by Sin Nombre hantavirus.


PLOS ONE | 2015

A Pan-GTPase Inhibitor as a Molecular Probe.

Lin Hong; Yuna Guo; Soumik BasuRay; Jacob O. Agola; Elsa Romero; Denise S. Simpson; Chad E. Schroeder; Peter C. Simons; Anna Waller; Matthew Garcia; Mark B. Carter; Oleg Ursu; Kristine Gouveia; Jennifer E. Golden; Jeffrey Aubé; Angela Wandinger-Ness; Larry A. Sklar

Overactive GTPases have often been linked to human diseases. The available inhibitors are limited and have not progressed far in clinical trials. We report here a first-in-class small molecule pan-GTPase inhibitor discovered from a high throughput screening campaign. The compound CID1067700 inhibits multiple GTPases in biochemical, cellular protein and protein interaction, as well as cellular functional assays. In the biochemical and protein interaction assays, representative GTPases from Rho, Ras, and Rab, the three most generic subfamilies of the GTPases, were probed, while in the functional assays, physiological processes regulated by each of the three subfamilies of the GTPases were examined. The chemical functionalities essential for the activity of the compound were identified through structural derivatization. The compound is validated as a useful molecular probe upon which GTPase-targeting inhibitors with drug potentials might be developed.


Archive | 2013

A small molecule pan-inhibitor of Ras-superfamily GTPases with high efficacy towards Rab7

Lin Hong; Peter C. Simons; Anna Waller; Juan Strouse; Zurab Surviladze; Oleg Ursu; Cristian G. Bologa; Kristine Gouveia; Jacob O. Agola; Soumik BasuRay; Angela Wandinger-Ness; Larry A. Sklar; Denise S. Simpson; Chad E. Schroeder; Jennifer E. Golden; Jeffrey Aubé


Archive | 2013

Figure 2, Graph depicting stability of ML282 after 48 h in PBS (no additives)

Lin Hong; Peter C. Simons; Anna Waller; Juan Strouse; Zurab Surviladze; Oleg Ursu; Cristian Bologa; Kristine Gouveia; Jacob O. Agola; Soumik BasuRay; Angela Wandinger-Ness; Larry A. Sklar; Denise S. Simpson; Chad E. Schroeder; Jennifer E. Golden; Jeffrey Aubé


Archive | 2013

[Table, Experimental Results].

Lin Hong; Peter C. Simons; Anna Waller; Juan Strouse; Zurab Surviladze; Oleg Ursu; Cristian Bologa; Kristine Gouveia; Jacob O. Agola; Soumik BasuRay; Angela Wandinger-Ness; Larry A. Sklar; Denise S. Simpson; Chad E. Schroeder; Jennifer E. Golden; Jeffrey Aubé


Archive | 2013

Table 1, Probe ML282 Assay Data Summary

Lin Hong; Peter C. Simons; Anna Waller; Juan Strouse; Zurab Surviladze; Oleg Ursu; Cristian Bologa; Kristine Gouveia; Jacob O. Agola; Soumik BasuRay; Angela Wandinger-Ness; Larry A. Sklar; Denise S. Simpson; Chad E. Schroeder; Jennifer E. Golden; Jeffrey Aubé


Archive | 2013

Figure 4, Dose-response curves of ML282 (CID 1067700) with different GTPases

Lin Hong; Peter C. Simons; Anna Waller; Juan Strouse; Zurab Surviladze; Oleg Ursu; Cristian Bologa; Kristine Gouveia; Jacob O. Agola; Soumik BasuRay; Angela Wandinger-Ness; Larry A. Sklar; Denise S. Simpson; Chad E. Schroeder; Jennifer E. Golden; Jeffrey Aubé


Archive | 2013

Table 2, Solubility for ML282 in Assay Media

Lin Hong; Peter C. Simons; Anna Waller; Juan Strouse; Zurab Surviladze; Oleg Ursu; Cristian Bologa; Kristine Gouveia; Jacob O. Agola; Soumik BasuRay; Angela Wandinger-Ness; Larry A. Sklar; Denise S. Simpson; Chad E. Schroeder; Jennifer E. Golden; Jeffrey Aubé

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Anna Waller

University of New Mexico

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Larry A. Sklar

Vanderbilt University Medical Center

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Lin Hong

University of New Mexico

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Oleg Ursu

University of New Mexico

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