Stanley K. Sessions

Developmental correlates of genome size in plethodontid salamanders and their implications for genome evolution

We present an analysis of the evolutionary relationship between genome size (C‐value, mass of DNA per haploid nucleus) and developmental rate using observations of limb regeneration in salamanders of the family Plethodontidae. Rates of growth and differentiation of regenerating limbs are reported for 27 plethodontid species whose C‐values range from 14 to 76 picograms. A phylogenetic analysis employing Felsensteins method of independent contrasts indicates that rate of differentiation is inversely proportional to genome size, although we have not identified any statistically significant association between genome size and the growth rate of regenerating tissue. Our results are consistent with an interpretation that genome size may place a limit on the maximum rate of regeneration attainable in plethodontid salamanders. The implications of our findings for the “junk DNA,” “nucleotypic DNA,” “selfish DNA,” and “skeletal DNA” hypotheses of genome evolution are discussed.

UNDERSTANDING THE NET EFFECTS OF PESTICIDES ON AMPHIBIAN TREMATODE INFECTIONS

Anthropogenic factors can have simultaneous positive and negative effects on parasite transmission, and thus it is important to quantify their net effects on disease risk. Net effects will be a product of changes in the survival and traits (e.g., susceptibility, infectivity) of both hosts and parasites. In separate laboratory experiments, we exposed cercariae of the trematode Echinostoma trivolvis, and its first and second intermediate hosts, snails (Planorbella trivolvis) and green frog tadpoles (Rana clamitans), respectively, to one of four common pesticides (atrazine, glyphosate, carbaryl, and malathion) at standardized, ecologically relevant concentrations (201.0, 3700.0, 33.5, and 9.6 microg/L, respectively). We measured effects of pesticide exposure on six mechanisms important to this host-parasite interaction: (1) survival of E. trivolvis cercariae over 26 hours, (2) tadpole survival over two weeks, (3) snail survival over four weeks, (4) snail growth and fecundity, (5) cercarial infectivity, and (6) tadpole susceptibility to a fixed number of cercariae. Pesticides, in general, caused significantly greater mortality of E. trivolvis cercariae than did control treatments, but atrazine was the lone chemical to significantly reduce cercarial survival (LC50 value = 267 mg/L) and then only at concentrations greater than commonly found in aquatic ecosystems (> or =200 microg/L). None of the pesticides significantly enhanced E. trivolvis virulence, decreased tadpole survival, or reduced snail survival, growth, or fecundity. Sublethal exposure of the cercariae to the pesticides (4 h) did not significantly affect trematode encystment in R. clamitans. In contrast, sublethal exposure of R. clamitans to each of the four pesticides increased their susceptibility as measured by the percentage of cercariae that encysted. The reduction in exposure to trematodes due to pesticide-induced cercarial mortality (a density-mediated effect) was smaller than the pesticide-induced increase in amphibian susceptibility (a trait-mediated effect), suggesting that the net effect of exposure to environmentally realistic levels of pesticides will be to elevate amphibian trematode infections. These findings highlight the importance of elucidating the lethal and sublethal effects of anthropogenic factors on both hosts and parasites to understand the mechanisms underlying changes in parasite transmission and virulence, an approach that is especially needed for amphibians, a taxon experiencing global disease-related declines.

Amphibian Cytogenetics and Evolution

James Kezer: A Pioneer in Amphibian Cytogenetics. The Phylogeny of Amphibians: Current Knowledge and the Role of Cytogenetics. Cytotaxonomy of Caecilians. Cytogenetics and Evolution of Hynobiid Salamanders. Evolutionary Cytogenetics of Bolitoglossine Salamanders (Family Plethodontidae). Cytogenetics of the European Plethodontid Salamanders, Genus. Repetitive DNA Sequences and the Evolution of Neotropical Plethodontid Salamanders. Chromosome Heteromorphism in Newts and Its Significance in Relation to Evolution and Devleopment. Evolutionary Cytogenetics of Newts of the Genus as Revealed Using Monoclonal Antibodies. Centremere Fusions and Telomere Fusions During Meiosis in Amphibia. The Influence of Life History of Karyotypic Evolution in Frogs. Polyploidy and Cytogenetic Variation in Forgs of the Genus. Chromosome Evolution in Holarctic Treefrogs. Supernumary Chromosomes in Amphibians. The Evolution of Heterochromatin in the Amphibian Genome. Sex Determining Mechanisms and Sex Chromosomes in Amphibia. Appendix I: Nomenclature for Chromosomes. Appendix II: Classification of World Amphibians. Index.

An integrative analysis of phylogenetic relationships among newts of the genus Triturus (family Salamandridae), using comparative biochemistry, cytogenetics and reproductive interactions

All the currently available data with regard to morphology, palaeontology, biochemical genetics, reproductive interactions and behaviour have been collated and analysed with combinations of phenetic and numerical phylogenetic methods, and integrated into a consensus evolutionary tree for European newts of the genus Triturus.

Chromosome variation in the plethodontid salamander, Aneides ferreus

Karyotype variation in the plethodontid salamander, Aneides ferreus, has been analysed. 358 individuals from 14 populations, representing the major portion of the range of this salamander, have been karyologically examined. In A. ferreus, n=14. When the chromosomes are arranged in a decreasing relative length series, the karyotype is heteromorphic with respect to chromosome number 13, which may be either telocentric (T) or subtelocentric (ST). Variation in the heteromorphism over the range of the species is sex related, and probably also reflects relative population sizes. The heteromorphism in the isolated populations of A. ferreus on Vancouver Island, British Columbia, Canada, resembles a WZfemale/ZZmale sex chromosome dimorphism, suggesting the possibility that chromosome number 13 may be involved in sex determination in this population. The possibility that chromosome number 13 is involved in sex determination in all populations of A. ferreus is discussed. Our data suggest that the ancestral A. ferreus karyotype was homomorphic for T (T/T), and that the ST was derived from the T by a pericentric inversion. In peripheral populations, only the “W homologue” has been affected, whereas in central populations both the “W” and the “Z” chromosomes have been rearranged. Comparisons are made with other species of Aneides for which karyological information is available, and it is concluded that chromosome rearrangements have played an important role in the evolution of the genus. In C-banded chromosomes of A. ferreus, staining is most intense at the centromere regions of the larger chromosomes and is absent only in some of the smaller chromosomes. Implications of this C-banding pattern are discussed.

Evolutionary cytogenetics in salamanders

Salamanders (Amphibia: Caudata/Urodela) have been the subject of numerous cytogenetic studies, and data on karyotypes and genome sizes are available for most groups. Salamanders show a more-or-less distinct dichotomy between families with large chromosome numbers and interspecific variation in chromosome number, relative size, and shape (i.e. position of the centromere), and those that exhibit very little variation in these karyological features. This dichotomy is the basis of a major model of karyotype evolution in salamanders involving a kind of ‘karyotypic orthoselection’. Salamanders are also characterized by extremely large genomes (in terms of absolute mass of nuclear DNA) and extensive variation in genome size (and overall size of the chromosomes), which transcends variation in chromosome number and shape. The biological significance and evolution of chromosome number and shape within the karyotype is not yet understood, but genome size variation has been found to have strong phenotypic, biogeographic, and phylogenetic correlates that reveal information about the biological significance of this cytogenetic variable. Urodeles also present the advantage of only 10 families and less than 600 species, which facilitates the analysis of patterns within the entire order. The purpose of this review is to present a summary of what is currently known about overall patterns of variation in karyology and genome size in salamanders. These patterns are discussed within an evolutionary context.

Effects of localized application of transforming growth factor β1 on developing chick limbs

The effects of exogenous transforming growth factor beta (TGF-beta) on chick limb development in vivo were studied by implanting carriers of TGF-beta 1 into developing wing buds. Agarose beads were soaked in solutions containing TGF-beta 1 and implanted into wing buds at stages 18 to 27. Localized application of TGF-beta 1 to distal regions of the wing bud caused specific skeletal elements in the limb to be reduced or absent. The particular proximal-distal limb element affected depended on the stage at which the bead was implanted. Position of the bead in the anterior-posterior axis also influenced the pattern of affected structures. Experiments in which TGF-beta 1 beads were implanted and then removed at 24- and 48-hr intervals indicate that there are specific periods during which a skeletal element appears to be sensitive to the effects of exogenous TGF-beta 1. In a few cases, beads placed in proximal positions in later staged limbs resulted in formation of ectopic cartilage near the bead. These results suggest that exposure to exogenous TGF-beta 1 in vivo influences the development of skeletal elements in the chick limb in a stage- and position-dependent manner.

Does the early frog catch the worm? Disentangling potential drivers of a parasite age-intensity relationship in tadpoles

The manner in which parasite intensity and aggregation varies with host age can provide insights into parasite dynamics and help identify potential means of controlling infections in humans and wildlife. A significant challenge is to distinguish among competing mechanistic hypotheses for the relationship between age and parasite intensity or aggregation. Because different mechanisms can generate similar relationships, testing among competing hypotheses can be difficult, particularly in wildlife hosts, and often requires a combination of experimental and model fitting approaches. We used field data, experiments, and model fitting to distinguish among ten plausible drivers of a curvilinear age–intensity relationship and increasing aggregation with host age for echinostome trematode infections of green frogs. We found little support for most of these proposed drivers but did find that the parsimonious explanation for the observed age–intensity relationship was seasonal exposure to echinostomes. The parsimonious explanation for the aggregated distribution of parasites in this host population was heterogeneity in exposure. A predictive model incorporating seasonal exposure indicated that tadpoles hatching early or late in the breeding season should have lower trematode burdens at metamorphosis, particularly with simulated warmer climates. Application of this multi-pronged approach (field surveys, lab experiments, and modeling) to additional parasite–host systems could lead to discovery of general patterns in the drivers of parasite age–intensity and age–distribution relationships.

Evidence for an association of most nuclear RNA with chromatin

Chromatin prepared from mouse myeloma cell nuclei under conditions of low ionic strength and with minimal shearing contains at least 80% of the nuclear RNA which is labeled during a 5 or 30-minute pulse with uridine, or during a 5-minute pulse followed by a 25-minute chase. The RNA remains associated with chromatin after shearing by sonication, as determined by sedimentation and equilibrium density-gradient analyses. It is released from chromatin by procedures developed elsewhere to extract ribonucleoprotein particles from intact nuclei. These results, and the results of reconstruction experiments, suggest that this association reflects the in vivo location of nuclear RNA and is not the result of non-specific binding during preparation. The chromatin-associated RNA includes RNA species which are known to be post-transcriptional; 32 S precursor ribosomal RNA and poly(A)-containing heterogeneous nuclear RNA. Fractions of chromatin enriched in associated RNA were obtained by two methods developed elsewhere, and in both of these the enrichment obtained (3 to 10-fold) appears to be independent of the age of the RNA. The implications of these results for models of RNA processing are discussed.

The meiotic structure and behavior of the strongly heteromorphic X/Y sex chromosomes of neotropical plethodontid salamanders of the genus Oedipina

Plethodontid salamanders in the genus Oedipina are characterized by a strongly heteromorphic sex-determining pair of X/Y chromosomes. The telocentric X chromosome and the subtelocentric Y chromosome are clearly distinguished from the autosomes and their behavior during meiosis can be sequentially followed in squash preparations of spermatocytes. In Oedipina the sex chromosomes are not obscured by an opaque “sex vesicle” during early meiotic stages, making it possible to observe details of sex bivalent structure and behavior not directly visible in other vertebrate groups. The sex chromosomes can first be distinguished from autosomal bivalents at the conclusion of zygotene, with X and Y synapsed only along a short segment at their non-centromeric ends, forming a bivalent that contrasts sharply with the completely synapsed autosomes. During pachytene, the XY bivalent becomes progressively shortened and more compact, disappearing as a visible structure when pachytene progresses into the diffuse stage of male meiosis. Diplotene bivalents gradually emerge from the diffuse nuclei, presumably by the return of the loops of chromatin into their respective chromomeres. During early diplotene, the X/Y bivalent is clearly visible with a single chiasma within the synapsed segment. This chiasma is terminalized by first meiotic metaphase with the X and Y appearing either in end-to-end synaptic contact or as univalents separated at opposite poles relative to the equatorially distributed autosomal bivalents. In C-banded preparations, the Y is entirely heterochromatic while the X contains a large centromeric C-band and another block of heterochromatin located at the telomeric end, in the region of synapsis with the Y. We find no cytological evidence of dosage compensation, such as differential staining of the X chromosomes or Barr bodies, in mitotic or interphase cells from female animals.