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Dive into the research topics where Stefanie Y. Nishimura is active.

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Featured researches published by Stefanie Y. Nishimura.


Biophysical Journal | 2002

Translational diffusion of individual class II MHC membrane proteins in cells.

Marija Vrljic; Stefanie Y. Nishimura; Sophie Brasselet; W. E. Moerner; Harden M. McConnell

Single-molecule epifluorescence microscopy was used to observe the translational motion of GPI-linked and native I-E(k) class II MHC membrane proteins in the plasma membrane of CHO cells. The purpose of the study was to look for deviations from Brownian diffusion that might arise from barriers to this motion. Detergent extraction had suggested that these proteins may be confined to lipid microdomains in the plasma membrane. The individual I-E(k) proteins were visualized with a Cy5-labeled peptide that binds to a specific extracytoplasmic site common to both proteins. Single-molecule trajectories were used to compute a radial distribution of displacements, yielding average diffusion coefficients equal to 0.22 (GPI-linked I-E(k)) and 0.18 microm(2)/s (native I-E(k)). The relative diffusion of pairs of proteins was also studied for intermolecular separations in the range 0.3-1.0 microm, to distinguish between free diffusion of a protein molecule and diffusion of proteins restricted to a rapidly diffusing small domain. Both analyses show that motion is predominantly Brownian. This study finds no strong evidence for significant confinement of either GPI-linked or native I-E(k) in the plasma membrane of CHO cells.


Biophysical Journal | 2008

Both MHC Class II and its GPI-Anchored Form Undergo Hop Diffusion as Observed by Single-Molecule Tracking

Yasuhiro Umemura; Marija Vrljic; Stefanie Y. Nishimura; Takahiro K. Fujiwara; Kenichi Suzuki; Akihiro Kusumi

Previously, investigations using single-fluorescent-molecule tracking at frame rates of up to 65 Hz, showed that the transmembrane MHC class II protein and its GPI-anchored modified form expressed in CHO cells undergo simple Brownian diffusion, without any influence of actin depolymerization with cytochalasin D. These results are at apparent variance with the view that GPI-anchored proteins stay with cholesterol-enriched raft domains, as well as with the observation that both lipids and transmembrane proteins undergo short-term confined diffusion within a compartment and long-term hop diffusion between compartments. Here, this apparent discrepancy has been resolved by reexamining the same paradigm, by using both high-speed single-particle tracking (50 kHz) and single fluorescent-molecule tracking (30 Hz). Both molecules exhibited rapid hop diffusion between 40-nm compartments, with an average dwell time of 1-3 ms in each compartment. Cytochalasin D hardly affected the hop diffusion, consistent with previous observations, whereas latrunculin A increased the compartment sizes with concomitant decreases of the hop rates, which led to an approximately 50% increase in the median macroscopic diffusion coefficient. These results indicate that the actin-based membrane skeleton influences the diffusion of both transmembrane and GPI-anchored proteins.


Biophysical Journal | 2005

Cholesterol Depletion Suppresses the Translational Diffusion of Class II Major Histocompatibility Complex Proteins in the Plasma Membrane

Marija Vrljic; Stefanie Y. Nishimura; W. E. Moerner; Harden M. McConnell


Biophysical Journal | 2006

Cholesterol Depletion Induces Solid-like Regions in the Plasma Membrane

Stefanie Y. Nishimura; Marija Vrljic; Lawrence O. Klein; Harden M. McConnell; W. E. Moerner


ChemPhysChem | 2009

DCDHF Fluorophores for Single-Molecule Imaging in Cells**

Samuel J. Lord; Nicholas R. Conley; Hsiao-lu D. Lee; Stefanie Y. Nishimura; Andrea K. Pomerantz; Katherine A. Willets; Zhikuan Lu; Hui Wang; Na Liu; Reichel Samuel; Ryan Weber; Alexander N. Semyonov; Meng He; Robert J. Twieg; W. E. Moerner


Journal of Physical Chemistry A | 2007

Photophysical properties of acene DCDHF fluorophores : Long-wavelength single-molecule emitters designed for cellular imaging

Samuel J. Lord; Zhikuan Lu; Hui Wang; Katherine A. Willets; P. James Schuck; Hsiao-lu D. Lee; Stefanie Y. Nishimura; Robert J. Twieg; W. E. Moerner


Accounts of Chemical Research | 2005

Nonlinear Optical Chromophores as Nanoscale Emitters for Single-Molecule Spectroscopy

Katherine A. Willets; Stefanie Y. Nishimura; P. James Schuck; Robert J. Twieg; W. E. Moerner


Journal of Physical Chemistry B | 2006

Diffusion of lipid-like single-molecule fluorophores in the cell membrane

Stefanie Y. Nishimura; Samuel J. Lord; Lawrence O. Klein; Katherine A. Willets; Meng He; Zhikuan Lu; Robert J. Twieg; W. E. Moerner


Frontiers in Optics (2005), paper LTuC4 | 2005

Nanophotonics and Single Molecules

W. E. Moerner; P. James Schuck; David P. Fromm; Anika Kinkhabwala; Samuel J. Lord; Stefanie Y. Nishimura; Katherine A. Willets; Arvind Sundaramurthy; Gordon S. Kino; Meng He; Zhikuan Lu; Robert J. Twieg


Journal of Physical Chemistry B | 1999

PHOTOCHEMISTRY OF CH3I ADSORBED ON AL2O3(0001)

Stefanie Y. Nishimura; D. N. Aldrich; M. T. Hoerth; C. J. Ralston; N. J. Tro

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Katherine A. Willets

University of Texas at Austin

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Meng He

Kent State University

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P. James Schuck

Lawrence Berkeley National Laboratory

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