Stefanie Y. Nishimura
Stanford University
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Featured researches published by Stefanie Y. Nishimura.
Biophysical Journal | 2002
Marija Vrljic; Stefanie Y. Nishimura; Sophie Brasselet; W. E. Moerner; Harden M. McConnell
Single-molecule epifluorescence microscopy was used to observe the translational motion of GPI-linked and native I-E(k) class II MHC membrane proteins in the plasma membrane of CHO cells. The purpose of the study was to look for deviations from Brownian diffusion that might arise from barriers to this motion. Detergent extraction had suggested that these proteins may be confined to lipid microdomains in the plasma membrane. The individual I-E(k) proteins were visualized with a Cy5-labeled peptide that binds to a specific extracytoplasmic site common to both proteins. Single-molecule trajectories were used to compute a radial distribution of displacements, yielding average diffusion coefficients equal to 0.22 (GPI-linked I-E(k)) and 0.18 microm(2)/s (native I-E(k)). The relative diffusion of pairs of proteins was also studied for intermolecular separations in the range 0.3-1.0 microm, to distinguish between free diffusion of a protein molecule and diffusion of proteins restricted to a rapidly diffusing small domain. Both analyses show that motion is predominantly Brownian. This study finds no strong evidence for significant confinement of either GPI-linked or native I-E(k) in the plasma membrane of CHO cells.
Biophysical Journal | 2008
Yasuhiro Umemura; Marija Vrljic; Stefanie Y. Nishimura; Takahiro K. Fujiwara; Kenichi Suzuki; Akihiro Kusumi
Previously, investigations using single-fluorescent-molecule tracking at frame rates of up to 65 Hz, showed that the transmembrane MHC class II protein and its GPI-anchored modified form expressed in CHO cells undergo simple Brownian diffusion, without any influence of actin depolymerization with cytochalasin D. These results are at apparent variance with the view that GPI-anchored proteins stay with cholesterol-enriched raft domains, as well as with the observation that both lipids and transmembrane proteins undergo short-term confined diffusion within a compartment and long-term hop diffusion between compartments. Here, this apparent discrepancy has been resolved by reexamining the same paradigm, by using both high-speed single-particle tracking (50 kHz) and single fluorescent-molecule tracking (30 Hz). Both molecules exhibited rapid hop diffusion between 40-nm compartments, with an average dwell time of 1-3 ms in each compartment. Cytochalasin D hardly affected the hop diffusion, consistent with previous observations, whereas latrunculin A increased the compartment sizes with concomitant decreases of the hop rates, which led to an approximately 50% increase in the median macroscopic diffusion coefficient. These results indicate that the actin-based membrane skeleton influences the diffusion of both transmembrane and GPI-anchored proteins.
Biophysical Journal | 2005
Marija Vrljic; Stefanie Y. Nishimura; W. E. Moerner; Harden M. McConnell
Biophysical Journal | 2006
Stefanie Y. Nishimura; Marija Vrljic; Lawrence O. Klein; Harden M. McConnell; W. E. Moerner
ChemPhysChem | 2009
Samuel J. Lord; Nicholas R. Conley; Hsiao-lu D. Lee; Stefanie Y. Nishimura; Andrea K. Pomerantz; Katherine A. Willets; Zhikuan Lu; Hui Wang; Na Liu; Reichel Samuel; Ryan Weber; Alexander N. Semyonov; Meng He; Robert J. Twieg; W. E. Moerner
Journal of Physical Chemistry A | 2007
Samuel J. Lord; Zhikuan Lu; Hui Wang; Katherine A. Willets; P. James Schuck; Hsiao-lu D. Lee; Stefanie Y. Nishimura; Robert J. Twieg; W. E. Moerner
Accounts of Chemical Research | 2005
Katherine A. Willets; Stefanie Y. Nishimura; P. James Schuck; Robert J. Twieg; W. E. Moerner
Journal of Physical Chemistry B | 2006
Stefanie Y. Nishimura; Samuel J. Lord; Lawrence O. Klein; Katherine A. Willets; Meng He; Zhikuan Lu; Robert J. Twieg; W. E. Moerner
Frontiers in Optics (2005), paper LTuC4 | 2005
W. E. Moerner; P. James Schuck; David P. Fromm; Anika Kinkhabwala; Samuel J. Lord; Stefanie Y. Nishimura; Katherine A. Willets; Arvind Sundaramurthy; Gordon S. Kino; Meng He; Zhikuan Lu; Robert J. Twieg
Journal of Physical Chemistry B | 1999
Stefanie Y. Nishimura; D. N. Aldrich; M. T. Hoerth; C. J. Ralston; N. J. Tro