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Featured researches published by T. Sweeney.


Journal of Clinical Microbiology | 2004

Discrimination between Scrapie and Bovine Spongiform Encephalopathy in Sheep by Molecular Size, Immunoreactivity, and Glycoprofile of Prion Protein

C. M. A. Thuring; Jo Hf Erkens; J.G. Jacobs; Alex Bossers; L.J.M. van Keulen; G.J. Garssen; F.G. van Zijderveld; S. J. Ryder; Martin H. Groschup; T. Sweeney; Jan Langeveld

ABSTRACT A procedure for discrimination between scrapie and bovine spongiform encephalopathy (BSE) in sheep is of importance for establishing whether BSE has entered the sheep population. Since BSE has not yet been found in sheep at the farm level, such discrimination procedures can be developed only with experimental sheep BSE. Two distinctive molecular features of the prion protein (PrP)—molecular size and glycosylation profile—in proteinase K digests of brain stem tissue from sheep were used here; upon Western blotting, these features led to an unequivocal discrimination among natural scrapie, experimental scrapie, and experimental BSE. The higher electrophoretic mobility of PrP in sheep BSE could be best observed after deglycosylation treatment with N-glycosidase F. A simpler method for confirmation of this size difference involved comparison of the ratios for the binding of two monoclonal antibodies: P4 and 66.94b4. Based on epitope mapping studies with P4 and peptides, it appeared that N-terminal amino acid sequence WGQGGSH was intact only in sheep scrapie digests. Another feature typical for PrP in sheep BSE was the large fraction of diglycosylated PrP (70% or more). These data were obtained for a large group of positive sheep, consisting of 7 sheep with experimental BSE infection (genotypes: six ARQ/ARQ and one AHQ/AHQ), 48 sheep naturally infected with scrapie (six different genotypes), and 3 sheep with primary experimental scrapie infection. Routine tests of slaughter material serve well for the initial detection of both BSE and scrapie. With Western blotting as a rapid follow-up test, a 66.94b4/P4 antibody binding ratio above 1.5 is a practical indicator for serious suspicion of BSE infection in sheep.


Journal of Animal Science | 2010

Repeatability of feed efficiency, carcass ultrasound, feeding behavior, and blood metabolic variables in finishing heifers divergently selected for residual feed intake

A. K. Kelly; M. McGee; D. H. Crews; T. Sweeney; T.M. Boland; D. A. Kenny

This study examined the relationship between feed efficiency and performance, and feeding behavior, blood metabolic variables, and various ultrasonic measurements in finishing beef heifers. Within-animal repeatability estimates of feed intake and behavior, performance, feed efficiency, ultrasonic body measures, and plasma analytes across the growing and finishing stages of the lifespan of the animal were also calculated. Fifty heifers previously ranked as yearlings on phenotypic residual feed intake (RFI) were used. Animals [initial BW = 418 (SD = 31.5) kg] were offered a TMR diet consisting of 70:30 concentrate and corn silage on a DM basis (ME 10.7 MJ/kg of DM; DM 530 g/kg) for 84 d. Feeding duration (min/d) and feeding frequency (events/d) were calculated for each animal on a daily basis using a computerized feeding system. Ultrasonic kidney fat and lumbar and rump fat and muscle depths were recorded on 3 equally spaced occasions during the experimental period. Blood samples were collected by jugular venipuncture on 4 occasions during the experimental period and analyzed for plasma concentrations of IGF-I, insulin, and various metabolites. Phenotypic RFI was calculated for all animals as the residuals from a regression model regressing DMI on ADG and midtest BW(0.75). Repeatability was calculated for several traits both within and between production phase using intraclass correlation and Pearson correlation coefficients as appropriate. Overall ADG, DMI, G:F, and RFI were 1.17 kg/d (SD = 0.19), 10.81 kg/d (SD = 1.02), 0.11 kg of BW gain/kg of DM (SD = 0.02), and 0.00 kg of DM/d (SD 0.59). Daily feeding events and eating rate tended to be positively correlated (P = 0.08) with RFI. Ultrasonic kidney fat depth tended to be related to G:F (r = -0.28; P = 0.07), and kidney fat accretion tended to be related to RFI (r = 0.29; P = 0.08). Plasma urea (r = 0.38; P < 0.01), β-hydroxybutyrate (r = 0.40; P < 0.01), and insulin (r = 0.23; P = 0.07) concentrations were correlated with RFI. Plasma glucose (r = -0.25; P = 0.07), glucose:insulin (r = 0.33; P < 0.05), and insulin (r = -0.30; P < 0.05) were associated with G:F. However, systemic IGF-I was unrelated (P > 0.10) to any measure of feed efficiency. Repeatability estimates within the finishing period for DMI, feeding duration, feeding events, feed intake/feeding event, and eating rate were 0.34, 0.37, 0.60, 0.62, and 0.56, respectively. Repeatability estimates (P < 0.001) between the growing and finishing phases for DMI, G:F, and RFI were r = 0.61, r = 0.37, and r = 0.62, respectively. Moderate to strong repeatability values (ranging from r = 0.40 to 0.76; P < 0.001) were obtained for feeding behavior traits between the yearling and finishing phases. We conclude that RFI and feeding behavior are repeatable traits and that some plasma analytes may be potential indicators of RFI in beef cattle.


Animal | 2008

The effects of seaweed extract inclusion on gut morphology, selected intestinal microbiota, nutrient digestibility, volatile fatty acid concentrations and the immune status of the weaned pig

P. Reilly; J. V. O’Doherty; K.M. Pierce; J.J. Callan; J. T. O’Sullivan; T. Sweeney

An experiment (complete randomised design) was conducted to investigate the effects of Laminaria hyperborea and Laminaria digitata seaweed extract inclusion on gut morphology, selected intestinal microbiota populations, volatile fatty acid concentrations and the immune status of the weaned pig. Twenty-eight piglets (24 days of age, 6.5 ± 1.4 kg live weight) were assigned to one of four dietary treatments for 7 days and then sacrificed: (T1) basal diet (control); (T2) basal diet and 1.5 g/kg L. hyperborea seaweed extract; (T3) basal diet and 1.5 g/kg L. digitata seaweed extract; and (T4) basal diet and 1.5 g/kg of a combination of L. hyperborea and L. digitata seaweed extract. The seaweed extract contained both laminarin and fucoidan. Digesta samples were taken from the caecum and colon to measure the enterobacteria, bifidobacteria and lactobacilli populations and for volatile fatty acid analysis. Tissue samples were taken from the duodenum, jejunum and ileum for morphological examination. Blood samples were taken to determine the cytokine gene expression profile and to measure the phagocytotic capacity of the blood. Pigs offered diets containing L. hyperborea seaweed extract had less bifidobacteria in the colon (P < 0.05) and lactobacilli in the caecum (P < 0.05) and colon (P < 0.001). The inclusion of L. digitata seaweed extract resulted in lower populations of enterobacteria in the caecum and colon (P < 0.01), bifidobacteria in the caecum (P < 0.05), and lactobacilli in the caecum (P < 0.05) and colon (P < 0.001). Pigs offered the combination of L. hyperborea and L. digitata seaweed extracts had less enterobacteria (P < 0.05) and lactobacilli (P < 0.01) in the caecum and colon. Pigs offered the L. digitata-supplemented diet had a reduced villous height in the duodenum and jejunum (P < 0.05). The inclusion of the L. digitata seaweed extract increased the molar proportion of butyric acid in the colon (P < 0.05). There was a significant reduction in the ammonia concentration in the colon with the inclusion of L. hyperborea (P < 0.01) and L. digitata (P < 0.05) seaweed extracts. An increase in the expression of the Interleukin-8 mRNA was observed on day 6 with the supplementation of the combination of L. hyperborea and L. digitata seaweed extract (P < 0.05). The inclusion of L. hyperborea seaweed extract resulted in an increase in total monocyte number (P < 0.05). In conclusion, the supplementation of L. hyperborea and L. digitata seaweed extract alone and in combination reduced the enterobacteria, bifidobacteria and lactobacilli populations in the caecum and colon, while only marginal effects on the immune response was observed.


Animal Science | 2005

The effect of cereal type and exogenous enzyme supplementation in pig diets on nutrient digestibility, intestinal microflora, volatile fatty acid concentration and manure ammonia emissions from finisher pigs

J.M. O'Connell; T. Sweeney; J.J. Callan; J. V. O'Doherty

A 2 × 2 factorial experiment was conducted to investigate the interaction between cereal type (wheat v . barley) and an exogenous enzyme supplement (with or without) on nutrient digestibility, large intestinal microflora, volatile fatty acid profile and in vitro manure ammonia emissions from finisher pigs. The enzyme supplement used contained endo-1, 3-β-glucanase (EC 3·2·1·6) and endo-1, 4-β-xylanase (EC 3·2·1·8). The diets were formulated to contain similar concentrations of net energy (9·8 MJ/kg) and lysine (10·0 g/kg). Urine and faeces were collected over seven consecutive days from 16 boars (four boars per treatment, 80·0 kg live weight) that were housed in metabolism crates. After collections, the pigs were slaughtered and the contents of the intestinal tracts were removed for analysis. There was a significant interaction between cereal type and enzyme inclusion in the apparent total tract digestibility of dry matter (DMD), organic matter (OMD) and nitrogen. The inclusion of an enzyme supplement in barley-based diets increased ( P P in vitro ammonia emissions. In the absence of an enzyme supplement, barley-based diets reduced the proportion of isovaleric acid ( P P P


Animal Science | 2006

The effect of lactose and inulin on intestinal morphology, selected microbial populations and volatile fatty acid concentrations in the gastro-intestinal tract of the weanling pig

K.M. Pierce; T. Sweeney; P. O. Brophy; J.J. Callan; E. Fitzpatrick; P. McCarthy; J. V. O'Doherty

Twenty piglets (21 days, 7·8 kg live weight (LW)) were used in a 2×2 factorial to investigate interactions between lactose and inulin on intestinal morphology, microbiology and volatile fatty acid (VFA) production of the weanling pig. The piglets were offered the following diets for 6 days and then sacrificed: (T1) 150 g/kg lactose, (T2) 150 g/kg lactose +15 g/kg inulin, ( T3) 330 g/kg lactose, and ( T4) 330 g/kg lactose +15 g/kg inulin. Tissue samples were taken from the duodenum, jejunum and ileum for morphological measurements. Digesta samples were taken from the ileum, caecum and colon. There was an interaction ( P P 2 =0·45) and the jejunum ( P 2 =0·25). The inclusion of 330 g/kg lactose increased ( P P P


Applied and Environmental Microbiology | 2011

Serotypes and virulence profiles of non-O157 Shiga toxin-producing Escherichia coli isolates from bovine farms.

Áine Monaghan; B. Byrne; Séamus Fanning; T. Sweeney; D.A. McDowell; Declan Bolton

ABSTRACT Non-O157 Shiga toxin-producing Escherichia coli (STEC) strains are clinically significant food-borne pathogens. However, there is a dearth of information on serotype prevalence and virulence gene distribution, data essential for the development of public health protection monitoring and control activities for the meat and dairy industries. Thus, the objective of this study was to examine the prevalence of non-O157 STEC on beef and dairy farms and to characterize the isolates in terms of serotype and virulence markers. Bovine fecal samples (n = 1,200) and farm soil samples (n = 600) were collected from 20 farms throughout Ireland over a 12-month period. Shiga toxin-positive samples were cultured and colonies examined for the presence of stx 1 and/or stx 2 genes by PCR. Positive isolates were serotyped and examined for a range of virulence factors, including eaeA, hlyA, tir, espA, espB, katP, espP, etpD, saa, sab, toxB, iha, lpfA O157/OI-141, lpfA O113, and lpfA O157/OI-154. Shiga toxin and intimin genes were further examined for known variants. Significant numbers of fecal (40%) and soil (27%) samples were stx positive, with a surge observed in late summer-early autumn. One hundred seven STEC isolates were recovered, representing 17 serotypes. O26:H11 and O145:H28 were the most clinically significant, with O113:H4 being the most frequently isolated. However, O2:H27, O13/O15:H2, and ONT:H27 also carried stx 1 and/or stx 2 and eaeA and may be emerging pathogens.


Journal of the Science of Food and Agriculture | 2009

The effect of dietary Laminaria-derived laminarin and fucoidan on nutrient digestibility, nitrogen utilisation, intestinal microflora and volatile fatty acid concentration in pigs.

M.B. Lynch; T. Sweeney; J.J. Callan; John T. O'sullivan; J. V. O'Doherty

BACKGROUND In experiment 1, 30 boars were assigned to one of five treatments (n = 6): T1, 0 g kg(-1) seaweed extract (SWE); T2, 0.7 g kg(-1) SWE; T3, 1.4 g kg(-1) SWE; T4, 2.8 g kg(-1) SWE and T5, 5.6 g kg(-1) SWE. The extract contained laminarin and fucoidan only and was extracted from Laminaria spp. In experiment 2, 28 boars were assigned, in a 2 x 2 factorial to one of four treatments (n = 7): T1, control; T2, control plus 300 mg laminarin; T3, control plus 240 mg fucoidan; T4, control plus 300 mg laminarin and 240 mg fucoidan kg(-1) diet. RESULTS In experiment 1 there was a response to SWE on colonic Bifidobacterium spp. (P < 0.01 quadratic), Enterobacterium spp. (quadratic P < 0.05) and on caecal Enterobacterium spp. (quadratic P < 0.05). In experiment 2 there was an interaction (P < 0.05) between laminarin and fucoidan supplementation on Enterobacterium spp. in the proximal and distal colon. Pigs offered laminarin had reduced Enterobacterium spp. compared with pigs offered the control diet. However, the combination of laminarin and fucoidan had increased Enterobacterium spp. compared with alone. Pigs offered diets containing fucoidan had increased Lactobacilli spp. in the proximal colon (P < 0.05) and distal colon (P < 0.001) compared with non-fucoidan diets. CONCLUSION Overall, the reductions in intestinal Enterobacterium spp. and increases in Lactobacilli spp. obtained suggest that laminarin and fucoidan may provide a dietary means to improve gut health in pigs.


Animal Health Research Reviews | 2005

Gastrointestinal nematode infection in sheep – a review of the alternatives to anthelmintics in parasite control

G. Sayers; T. Sweeney

Abstract Efforts to curb production losses caused by nematode parasitism in sheep have led to the development of a number of control methods to complement or replace anthelmintics. The need for alternative control measures stems from the emergence of anthelmintic-resistant parasitic nematodes with reports of multi-class resistance to these drugs now emerging. A number of these control methods such as predacious microfungi, protein supplementation, plant extracts in feed and vaccines have demonstrated potential to control infection but require development and examination under natural conditions. Breeding for natural resistance to nematode infection has already shown success in controlling the disease under natural conditions. Selection for resistance is currently based on fecal egg count measurements but identification of genetic indicators of resistance will provide a more efficient method of selection. Current quantitative trait loci for nematode resistance include the MHC genes, interferon gamma gene, IgE gene and microsatellites on chromosome 1, 5 and 6. This paper reviews the current alternatives to anthelmintics to control infection, with an emphasis on breeding for host resistance and identification of genetic indicators of resistance.


Parasitology | 2005

Major Histocompatibility Complex DRB1 gene: its role in nematode resistance in Suffolk and Texel sheep breeds

G. Sayers; Barbara Good; J.P. Hanrahan; Marion T. Ryan; J. M. Angles; T. Sweeney

A potential control strategy for nematode infection in sheep is the implementation of a breeding programme to select for genes associated with resistance. The Texel breed is more resistant to gastrointestinal nematode infection than the Suffolk breed, based on faecal egg count, and this difference should enable the identification of some of the genes responsible for resistance. The objective of this study was to determine if variation at the ovine MHC-DRB1 locus was associated with variation in faecal egg count in Suffolk and Texel sheep. Ovar-DRB1 alleles and faecal egg count were determined for Texel (n = 105) and Suffolk (n = 71) lambs. Eight Ovar-DRB1 alleles, including 1 previously unknown allele, were identified in the Texel breed by sequence-base-typing. Seven Ovar-DRB1 alleles were identified in the Suffolk breed. Two Ovar-DRB1 alleles were common to both breeds, but were among the least frequent in the Suffolk population. In the Suffolk breed 1 Ovar-DRB1 allele was associated with a decrease in faecal egg count and 2 alleles with an increase in faecal egg count. This locus accounted for 14% of the natural variation in faecal egg count in Suffolks. There was no evidence for an association between Ovar-DRB1 alleles and faecal egg count in the Texel breed and the Ovar-DRB1 locus accounted for only 3% of the phenotypic variation in faecal egg count. These results suggest that the Ovar-DRB1 gene plays an important role in resistance to nematode infection in the Suffolk breed. The difference in faecal egg counts between these breeds may be attributable in part to the different allele profile at the Ovar-DRB1 locus.


Journal of Animal Science | 2010

Effect of maternal fish oil and seaweed extract supplementation on colostrum and milk composition, humoral immune response, and performance of suckled piglets

S. G. Leonard; T. Sweeney; Bojlul Bahar; B. P. Lynch; J. V. O'Doherty

An experiment with a 2 x 2 factorial arrangement of treatments (n = 10 sows/treatment) was conducted to investigate the effect of maternal dietary supplementation with seaweed extract (SWE: 0 vs. 10.0 g/d) and fish oil (FO) inclusion (0 vs. 100 g/d) from d 109 of gestation until weaning (d 26) on sow colostrum and milk composition, humoral immune response on d 5 and 12 of lactation, and suckling piglet performance. Furthermore, the influence of dietary treatment on the phagocytic activity of whole blood white cells at weaning was examined. The SWE (10 g) contained laminarin (1 g), fucoidan (0.8 g), and ash (8.2 g) and was extracted from a Laminaria spp. The FO contained approximately 40% eicosapentaenoic acid and 25% docosahexaenoic acid. The SWE-supplemented sows had greater colostrum IgG (P < 0.01) and milk protein (P < 0.05) concentrations on d 12 of lactation compared with non-SWE-supplemented sows. Piglets suckling SWE-supplemented sows had greater serum IgG (P < 0.01) and IgA (P < 0.05) concentrations on d 5 and IgG concentrations on d 12 (P < 0.05) of lactation compared with those suckling non SWE-supplemented sows. In contrast, FO supplementation exerted a suppressive effect on piglet serum IgA concentrations on d 5 of lactation (P < 0.05) compared with non-FO-supplemented diets. Dietary FO supplementation enhanced the n-3 PUFA proportion of sow milk (P < 0.001) and piglet serum at weaning (P < 0.001). Piglets suckling SWE-supplemented sows had a greater percentage of Escherichia coli phagocytizing leukocytes (P < 0.05) and a reduced percentage of E. coli phagocytizing lymphocytes (P < 0.01) compared with non-SWE-supplemented sows. Piglets suckling FO-supplemented sows had a greater percentage of leukocytes (P < 0.05) and lymphocytes (P < 0.05) phagocytizing E. coli compared with non-FO-supplemented sows. However, total leukocyte, lymphocyte, monocyte, and neutrophil numbers were not influenced by sow dietary treatment. Average piglet weaning weight and ADG between birth and weaning were not influenced by sow dietary treatment. In conclusion, the current study demonstrates that SWE supplementation from d 109 of gestation until weaning enhanced colostral IgG concentrations and circulatory IgG concentrations in suckled piglets on d 5 and 12 of lactation. Furthermore, the percentage of leukocytes and lymphocytes phagocytizing E. coli at weaning increased in piglets suckling FO-supplemented sows, indicating an enhancement of immune function against presenting pathogens. However, the combination of SWE and FO bestowed no positive effect on immune responses investigated in the current study.

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J. V. O'Doherty

University College Dublin

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Bojlul Bahar

University College Dublin

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Marion T. Ryan

University College Dublin

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C. J. O'Shea

University College Dublin

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J.J. Callan

University College Dublin

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A. Mukhopadhya

University College Dublin

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