Takeshi Tokida

Rice cultivar responses to elevated CO2 at two free-air CO2 enrichment (FACE) sites in Japan

There is some evidence that rice cultivars respond differently to elevated CO2 concentrations ([CO2]), but [CO2]×cultivar interaction has never been tested under open-field conditions across different sites. Here, we report on trials conducted at free-air CO2 enrichment (FACE) facilities at two sites in Japan, Shizukuishi (2007 and 2008) and Tsukuba (2010). The average growing-season air temperature was more than 5°C warmer at Tsukuba than at Shizukuishi. For four cultivars tested at both sites, the [CO2]×cultivar interaction was significant for brown rice yield, but there was no significant interaction with site-year. Higher-yielding cultivars with a large sink size showed a greater [CO2] response. The Tsukuba FACE experiment, which included eight cultivars, revealed a wider range of yield enhancement (3-36%) than the multi-site experiment. All of the tested yield components contributed to this enhancement, but there was a highly significant [CO2]×cultivar interaction for percentage of ripened spikelets. These results suggest that a large sink is a prerequisite for higher productivity under elevated [CO2], but that improving carbon allocation by increasing grain setting may also be a practical way of increasing the yield response to elevated [CO2].

Soil and Water Warming Accelerates Phenology and Down-Regulation of Leaf Photosynthesis of Rice Plants Grown Under Free-Air CO2 Enrichment (FACE)

To enable prediction of future rice production in a changing climate, we need to understand the interactive effects of temperature and elevated [CO2] (E[CO2]). We therefore examined if the effect of E[CO2] on the light-saturated leaf photosynthetic rate (Asat) was affected by soil and water temperature (NT, normal; ET, elevated) under open-field conditions at the rice free-air CO2 enrichment (FACE) facility in Shizukuishi, Japan, in 2007 and 2008. Season-long E[CO2] (+200 µmol mol−1) increased Asat by 26%, when averaged over two years, temperature regimes and growth stages. The effect of ET (+2°C) on Asat was not significant at active tillering and heading, but became negative and significant at mid-grain filling; Asat in E[CO2]–ET was higher than in ambient [CO2] (A[CO2])–NT by only 4%. Photosynthetic down-regulation at E[CO2] also became apparent at mid-grain filling; Asat compared at the same [CO2] in the leaf cuvette was significantly lower in plants grown in E[CO2] than in those grown in A[CO2]. The additive effects of E[CO2] and ET decreased Asat by 23% compared with that of A[CO2]–NT plants. Although total crop nitrogen (N) uptake was increased by ET, N allocation to the leaves and to Rubisco was reduced under ET and E[CO2] at mid-grain filling, which resulted in a significant decrease (32%) in the maximum rate of ribulose-1,5-bisphosphate carboxylation on a leaf area basis. Because the change in N allocation was associated with the accelerated phenology in E[CO2]–ET plants, we conclude that soil and water warming accelerates photosynthetic down-regulation at E[CO2].

Appropriate frequency and time of day to measure methane emissions from an irrigated rice paddy in Japan using the manual closed chamber method

Rice agriculture is a large anthropogenic source of atmospheric methane (CH4). The reliable estimation of CH4 emissions requires frequent measurements to trace diurnal and seasonal variations. To evaluate the appropriate intervals and optimal time of day to measure CH4 emissions using the manual closed chamber method, this study analysed four datasets of CH4 fluxes in a Japanese irrigated rice paddy measured at 2-hour intervals using the automated closed chamber method. The typical diurnal variation in the CH4 flux was observed after the rices heading stage, during which the daily time-weighted mean CH4 flux was observed twice, in the 08:00–11:59 and 18:00–21:59 time windows. During the flooded rice-growing period, the CH4 emissions, which were estimated by weekly measurements once per day during the 10:00–11:59 time window, corresponded to 93–106% of the emissions calculated using the automated measurement method. In contrast, no regular measurement strategies produced a satisfactory estimate of the CH4 emissions during the non-flooded rice-growing period because of a sharp increase in the CH4 flux just after the drainage. Consequently, the combination of weekly measurements once per day at approximately 10:00 as local mean time for the flooded rice-growing period and daily measurements once per day during the daytime for 1 week after each drainage event is recommended as a strategy to obtain the estimation with a ±10% error.

Do the rich always become richer? Characterizing the leaf physiological response of the high-yielding rice cultivar Takanari to free-air CO2 enrichment.

The development of crops which are well suited to growth under future environmental conditions such as higher atmospheric CO2 concentrations ([CO2]) is essential to meeting the challenge of ensuring food security in the face of the growing human population and changing climate. A high-yielding indica rice variety (Oryza sativa L. cv. Takanari) has been recently identified as a potential candidate for such breeding, due to its high productivity in present [CO2]. To test if it could further increase its productivity under elevated [CO2] (eCO2), Takanari was grown in the paddy field under season-long free-air CO2 enrichment (FACE, approximately 200 µmol mol−1 above ambient [CO2]) and its leaf physiology was compared with the representative japonica variety ‘Koshihikari’. Takanari showed consistently higher midday photosynthesis and stomatal conductance than Koshihikari under both ambient and FACE growth conditions over 2 years. Maximum ribulose-1,5-bisphosphate carboxylation and electron transport rates were higher for Takanari at the mid-grain filling stage in both years. Mesophyll conductance was higher in Takanari than in Koshihikari at the late grain-filling stage. In contrast to Koshihikari, Takanari grown under FACE conditions showed no decrease in total leaf nitrogen on an area basis relative to ambient-grown plants. Chl content was higher in Takanari than in Koshihikari at the same leaf nitrogen level. These results indicate that Takanari maintains its superiority over Koshihikari in regards to its leaf-level productivity when grown in elevated [CO2] and it may be a valuable resource for rice breeding programs which seek to increase crop productivity under current and future [CO2].

Heat-tolerant rice cultivars retain grain appearance quality under free-air CO2 enrichment

BackgroundHeat-tolerant rice cultivars have been developed as a countermeasure to poor grain appearance quality under high temperatures. Recent studies showed that elevated CO2 concentrations (E-[CO2]) also reduce grain quality. To determine whether heat-tolerant cultivars also tolerate E-[CO2], we conducted a free-air CO2 enrichment (FACE) experiment with 12 rice cultivars differing in heat tolerance.ResultsThe percentage of undamaged grains of five standard cultivars (Akitakomachi, Kinuhikari, Koshihikari, Matsuribare, Nipponbare) averaged 61.7% in the ambient [CO2] (AMB) plot and 51.7% in the FACE plot, whereas that of heat-tolerant cultivars (Eminokizuna, Wa2398, Kanto 257, Toyama 80, Mineharuka, Kanto 259, Saikai 290) averaged 73.5% in AMB and 71.3% in FACE. This resulted in a significant [CO2] by cultivar interaction. The percentage of white-base or white-back grains increased from 8.4% in AMB to 17.1% in FACE in the sensitive cultivars, but from only 2.1% in AMB to only 4.4% in FACE in the heat-tolerant cultivars.ConclusionHeat-tolerant cultivars retained their grain appearance quality at E-[CO2] under present air temperatures. Further improvements in appearance quality under present conditions will be needed to achieve improvements under E-[CO2], because E-[CO2] will likely lower the threshold temperature for heat stress.

Effects of Elevated Carbon Dioxide, Elevated Temperature, and Rice Growth Stage on the Community Structure of Rice Root–Associated Bacteria

The effects of free-air carbon dioxide enrichment (FACE) and elevated soil and water temperature (warming) on the rice root–associated bacterial community were evaluated by clone library analysis of the 16S ribosomal RNA gene. Roots were sampled at the panicle initiation and ripening stages 41 and 92 days after transplanting (DAT), respectively. The relative abundances of the methanotrophs Methylosinus and Methylocystis were increased by warming and decreased by FACE at 92 DAT, which indicated that microbial methane (CH4) oxidation in rice roots may have been influenced by global warming. The relative abundance of Burkholderia kururiensis was increased by warming at 41 DAT and by FACE or warming at 92 DAT. The abundances of methanotrophs increased during rice growth, which was likely induced by an enhancement in the emission of CH4 from the paddy fields, suggesting that CH4 is one of the predominant factors affecting the structure of the microbial community in rice roots. Marked variations in the community structure were also observed during rice growth in other genera: Bradyrhizobium, Clostridium, and an unknown genus close to Epsilonproteobacteria were abundant at 92 DAT, whereas Achromobacter was abundant at 41 DAT. These results demonstrated that the community structures of rice root-associated bacteria were markedly affected by FACE, temperature, and the rice growth stage.

The effects of free-air CO2 enrichment (FACE) on carbon and nitrogen accumulation in grains of rice (Oryza sativa L.)

Rising atmospheric CO2 concentrations will probably increase rice (Oryza sativa L.) yield but decrease grain nitrogen (GN) concentration. Grains attached to different positions in the panicles differ greatly in weight and quality, but their responses to elevated CO2 (e[CO2]) are poorly understood, which limits our understanding of the mechanisms of yield enhancement and quality degradation. Thus a free-air CO2 enrichment experiment was conducted to examine the effects of e[CO2] on grain mass (GM), grain carbon (GC), and GN accumulation in the spikelets attached to the upper primary rachis branch (superior spikelets; SS) and those attached to the lower secondary rachis (inferior spikelets; IS). e[CO2] stimulated the rice yield by 13% but decreased the N concentration in the panicle by 7% when averaged over two levels of N fertilizations (P < 0.01). The responses of SS and IS to e[CO2] were different particularly under higher N supply. For SS, e[CO2] decreased GN by 24% (P < 0.01) but did not affect GM. For IS, e[CO2] increased GM by 13% (P < 0.05) but GN was not affected. The reduction of GN due to e[CO2] started to appear at the beginning of grain filling. These results suggest that future [CO2] levels probably stimulate the grain growth of IS, most of which are not marketable due to limited size, at the expense of GN reduction in SS. Translocation of N from SS to IS may be a possible mechanism for reduction in GN of SS. This may degrade the grain quality of marketable rice under e[CO2].

A Rice Gene for Microbial Symbiosis, Oryza sativa CCaMK, Reduces CH4 Flux in a Paddy Field with Low Nitrogen Input

ABSTRACT Plants have mutualistic symbiotic relationships with rhizobia and fungi by the common symbiosis pathway, of which Ca2+/calmodulin-dependent protein kinase (encoded by CCaMK) is a central component. Although Oryza sativa CCaMK (OsCCaMK) is required for fungal accommodation in rice roots, little is known about the role of OsCCaMK in rice symbiosis with bacteria. Here, we report the effect of a Tos17-induced OsCCaMK mutant (NE1115) on CH4 flux in low-nitrogen (LN) and standard-nitrogen (SN) paddy fields compared with wild-type (WT) Nipponbare. The growth of NE1115 was significantly decreased compared with that of the WT, especially in the LN field. The CH4 flux of NE1115 in the LN field was significantly greater (156 to 407% in 2011 and 170 to 816% in 2012) than that of the WT, although no difference was observed in the SN field. The copy number of pmoA (encodes methane monooxygenase in methanotrophs) was significantly higher in the roots and rhizosphere soil of the WT than in those of NE1115. However, the mcrA (encodes methyl coenzyme M reductase in methanogens) copy number did not differ between the WT and NE1115. These results were supported by a 13C-labeled CH4-feeding experiment. In addition, the natural abundance of 15N in WT shoots (3.05‰) was significantly lower than in NE1115 shoots (3.45‰), suggesting greater N2 fixation in the WT because of dilution with atmospheric N2 (0.00‰). Thus, CH4 oxidation and N2 fixation were simultaneously activated in the root zone of WT rice in the LN field and both processes are likely controlled by OsCCaMK.

Physical Controls on Ebullition Losses of Methane from Peatlands

Recent studies indicate that direct escaping of CH 4 -containing gas bubbles, i.e., ebullition, plays a considerable role in determining the total CH 4 emission from peatlands into the atmosphere. Although methane is a biological product, a large bubble-storage capacity of peat leads to a partial decoupling between the production and release of methane, allowing for physical factors to act as a trigger for the ebullition. Buoyancy-induced ebullition can be controlled by (1) atmospheric pressure, (2) peat temperature, and (3) water table level. Falling atmospheric pressure exerts a dominant role in determining the timing of ebullition in some peatlands. Rapid rise in water table position by rain would result in the suppression of the bubble volume, and hence, halting ebullition. Diurnal temperature modulation might affect ebullition; however, its significance is expected to depend heavily on the position of water table, thermal characteristics of the peat, and the depth distribution of the CH 4 -containing bubbles. Wind-induced surface turbulence also gives rise to ebullition as demonstrated by eddy covariance studies. Another type of ebullition includes a release of entrapped CH 4 accumulated during winter at spring-thaw period, but its significance is largely unknown. Further technical development is necessary to examine recently suggested massive CH 4 ebullition (>g CH 4 m -2 h -1 ) in terms of surface flux monitoring. Future research also needs to address subsurface behavior of the bubbles in relation to physical characteristics of peat and other transport modes.

Cropland soil–plant systems control production and consumption of methane and nitrous oxide and their emissions to the atmosphere

Abstract Croplands are an important source of atmospheric methane (CH4) and nitrous oxide (N2O), both potent greenhouse gases. Reduction of cropland CH4 and N2O emissions is expected to mitigate climate change. However, large uncertainty remains in the assessment and prediction of these emissions, which prevents us from establishing appropriate mitigation options and strategies. The uncertainty is attributed mainly to the high spatiotemporal variability in emissions (e.g., emission spikes of N2O). Understanding and quantifying how hotspots of CH4 and N2O production in soil and then hot moments of their emissions occur would help reduce the uncertainty. This review focuses on soil–plant systems, particularly the rhizosphere, as possible hotspots of production and consumption of CH4 and N2O. It is well known that the rhizosphere controls CH4 emission strongly, though each process of production and consumption remains to be quantified. On the other hand, surprisingly little attention has been paid to N2O, besides the fact that plant roots strongly control nitrification and denitrification. We review the current knowledge of cropland CH4 and N2O emissions, and conclude that soil–plant interactions strongly affect cropland emissions of both gases, in which functions of plant roots affecting biogeochemical factors (e.g., availability of oxygen, labile organic carbon and inorganic nitrogen) in the rhizosphere and phenological changes are particularly important. In relation to the status of current knowledge, we discuss future research needed.