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Featured researches published by Thomas Trenkle.


Molecular and Cellular Biology | 2000

Vav3 Mediates Receptor Protein Tyrosine Kinase Signaling, Regulates GTPase Activity, Modulates Cell Morphology, and Induces Cell Transformation

Liyu Zeng; Pallavi Sachdev; Lunbiao Yan; Joseph L.-K. Chan; Thomas Trenkle; Michael McClelland; John Welsh; Lu-Hai Wang

ABSTRACT A recently reported new member of the Vav family proteins, Vav3 has been identified as a Ros receptor protein tyrosine kinase (RPTK) interacting protein by yeast two-hybrid screening. Northern analysis shows that Vav3 has a broad tissue expression profile that is distinct from those of Vav and Vav2. Two species of Vav3 transcripts, 3.4 and 5.4 kb, were detected with a differential expression pattern in various tissues. Transient expression of Vav in 293T and NIH 3T3 cells demonstrated that ligand stimulation of several RPTKs (epidermal growth factor receptor [EGFR], Ros, insulin receptor [IR], and insulin-like growth factor I receptor [IGFR]) led to tyrosine phosphorylation of Vav3 and its association with the receptors as well as their downstream signaling molecules, including Shc, Grb2, phospholipase C (PLC-γ), and phosphatidylinositol 3 kinase. In vitro binding assays using glutathione S-transferase-fusion polypeptides containing the GTPase-binding domains of Rok-α, Pak, or Ack revealed that overexpression of Vav3 in NIH 3T3 cells resulted in the activation of Rac-1 and Cdc42 whereas a deletion mutant lacking the N-terminal calponin homology and acidic region domains activated RhoA and Rac-1 but lost the ability to activate Cdc42. Vav3 induced marked membrane ruffles and microspikes in NIH 3T3 cells, while the N-terminal truncation mutants of Vav3 significantly enhanced membrane ruffle formation but had a reduced ability to induce microspikes. Activation of IR further enhanced the ability of Vav3 to induce membrane ruffles, but IGFR activation specifically promoted Vav3-mediated microspike formation. N-terminal truncation of Vav3 activated its transforming potential, as measured by focus-formation assays. We conclude that Vav3 mediates RPTK signaling and regulates GTPase activity, its native and mutant forms are able to modulate cell morphology, and it has the potential to induce cell transformation.


Methods in Enzymology | 1999

Reduced complexity probes for DNA arrays.

Thomas Trenkle; Françoise Mathieu-Daudé; John Welsh; Michael McClelland

Publisher Summary There have been many advances in methods to manufacture and probe arrays of DNAs. Membranes with hundreds or thousands of polymerase chain reaction (PCR) products from cDNA clones are commercially available. Any cDNA clones on the array that are from the most abundant few thousand of mRNAs in a cell can easily be detected using a radiolabeled probe containing the full complexity of the mRNA population in the cell. The only limitation is background hybridization to all clones. This chapter explains a strategy based on cDNA fingerprints generated by RNA arbitrarily primed PCR (RAP-PCR). This method generates different subsets of the mRNA population, depending on the primers used. Some of the mRNAs that are difficult to detect using total cDNA probes are sufficiently represented in these reduced complexity probes to be easily detected on arrays of colonies. This method has the further advantage that it generates a labeled probe using hundreds-fold less RNA than is currently used by any other array probing methods. The chapter discusses the use of statistically primed PCR (SP-PCR) to generate probes.


Nucleic Acids Research | 1998

Non-stoichiometric reduced complexity probes for cDNA arrays

Thomas Trenkle; John Welsh; Barbara Jung; Françoise Mathieu-Daudé; Michael McClelland


Gene | 2000

Major transcript variants of VAV3, a new member of the VAV family of guanine nucleotide exchange factors

Thomas Trenkle; Michael McClelland; Kathrin Adlkofer; John Welsh


BioTechniques | 1999

Differential Display Probes for cDNA Arrays

Thomas Trenkle; John Welsh; Michael McClelland


BioTechniques | 1998

GeneUp: A program to select short PCR primer pairs that occur in multiple members of sequence lists

Pesole G; Liuni S; Grillo G; Belichard P; Thomas Trenkle; John Welsh; Michael McClelland


Archive | 1999

Reduced complexity nucleic acid targets and methods of using same

Michael McClelland; John Welsh; Thomas Trenkle


Carcinogenesis | 1998

Estrogen-responsive RING finger mRNA induction in gastrointestinal carcinoma cells following bile acid treatment.

Barbara Jung; Thomas Vogt; Françoise Mathieu-Daudé; John Welsh; Michael McClelland; Thomas Trenkle; Christoph Weitzel; Frank Kullmann


Archive | 1999

Cibles d'acide nucleique de moindre complexite et leurs methodes d'utilisation

Michael McClelland; John Welsh; Thomas Trenkle


Archive | 1999

Zielnukleinsäure mit reduzierter komplexität und verfahren zu ihrer verwendung

Michael McClelland; Thomas Trenkle; John Welsh

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John Welsh

Indiana University Bloomington

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Françoise Mathieu-Daudé

Institut de recherche pour le développement

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Barbara Jung

University of California

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Joseph L.-K. Chan

Icahn School of Medicine at Mount Sinai

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Kathrin Adlkofer

Salk Institute for Biological Studies

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Liyu Zeng

Icahn School of Medicine at Mount Sinai

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Lu-Hai Wang

Icahn School of Medicine at Mount Sinai

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Pallavi Sachdev

Icahn School of Medicine at Mount Sinai

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