Tomas Tamulevičius

Implementation of diffractive optical element in four-wave mixing scheme for ex situ characterization of hydride vapor phase epitaxy-grown GaN layers.

A holographic beam splitter has been integrated into a picosecond four-wave mixing (FWM) scheme. This modification significantly simplified the procedure of dynamic grating recording, thus making the FWM technique an easy-to-use tool for the holographic characterization of wide band gap materials. The novel FWM scheme was applied for characterization of hydride vapor phase epitaxy-grown undoped GaN layers of different thickness. It allowed the determination of carrier lifetime, diffusion coefficient, and carrier diffusion length by optical means, as well as the study of carrier recombination peculiarities with respect to dislocation and excess carrier density.

Numerical implementation of the S-matrix algorithm for modeling of relief diffraction gratings

A new numerical implementation is developed to calculate the diffraction efficiency of relief diffraction gratings. In the new formulation, vectors containing the expansion coefficients of electric and magnetic fields on boundaries of the grating layer are expressed by additional constants. An S-matrix algorithm has been systematically described in detail and adapted to a simple matrix form. This implementation is suitable for the study of optical characteristics of periodic structures by using modern object-oriented programming languages and different standard mathematical software. The modeling program has been developed on the basis of this numerical implementation and tested by comparison with other commercially available programs and experimental data. Numerical examples are given to show the usefulness of the new implementation.

Numerical and experimental analysis of optical response of sub-wavelength period structure in carbonaceous film for refractive index sensing

The resonance structure coupling the light into the leaky guided modes, which are visible in the reflection spectra as sharp peaks (Woods anomalies), is analyzed experimentally and numerically. The guided mode resonance structure of 428 nm period patterned in a carbonaceous film demonstrated sensitivity of 70 nm/RIU. The calculated mode diagram explained the nature and positions of the peaks registered experimentally. The reflection spectra, near/far field distributions and field penetration depth for the analyzed structure were simulated employing three numerical solvers. The set of weak Rayleighs anomalies was indentified from the simulations and the experimental data.

Note: a microfluidic chip setup for capillarity-assisted particle assembly.

We developed a microfluidic chip setup for capillarity-assisted particle assembly (CAPA). A capillary bridge is formed between the aperture of a silicon chip and the assembly template. The bridge is fed with particle suspension through a microfluidic channel on the chip top side. With this setup, we can control the particle assembly location and tune the suspension composition during particle assembly. In this note, we describe the chip setup, the CAPA process using the microfluidic chip, and results of complex particle assemblies, such as composite particle arrays and particle gradients, that could not be obtained using a conventional CAPA setup.

Relevance of HCN2-expressing human mesenchymal stem cells for the generation of biological pacemakers

BackgroundThe transfection of human mesenchymal stem cells (hMSCs) with the hyperpolarization-activated cyclic nucleotide-gated ion channel 2 (HCN2) gene has been demonstrated to provide biological pacing in dogs with complete heart block. The mechanism appears to be the generation of the ion current (If) by the HCN2-expressing hMSCs. However, it is not clear how the transfection process and/or the HCN2 gene affect the growth functions of the hMSCs. Therefore, we investigated survival, proliferation, cell cycle, and growth on a Kapton® scaffold of HCN2-expressing hMSCs.MethodshMSCs were isolated from the bone marrow of healthy volunteers applying a selective cell adhesion procedure and were identified by their expression of specific surface markers. Cells from passages 2–3 were transfected by electroporation using commercial transfection kits and a pIRES2-EGFP vector carrying the pacemaker gene, mouse HCN2 (mHCN2). Transfection efficiency was confirmed by enhanced green fluorescent protein (EGFP) fluorescence, quantitative real-time polymerase chain reaction (RT-qPCR) and enzyme-linked immunosorbent assay (ELISA). After hMSCs were transfected, their viability, proliferation, If generation, apoptosis, cell cycle, and expression of transcription factors were measured and compared with non-transfected cells and cells transfected with pIRES2-EGFP vector alone.ResultsIntracellular mHCN2 expression after transfection increased from 22.14 to 62.66 ng/mg protein (p < 0.05). Transfection efficiency was 45 ± 5 %. The viability of mHCN2-transfected cells was 82 ± 5 %; they grew stably for more than 3 weeks and induced If current. mHCN2-transfected cells had low mitotic activity (10.4 ± 1.24 % in G2/M and 83.6 ± 2.5 % in G1 phases) as compared with non-transfected cells (52–53 % in G2/M and 31–35 % in G1 phases). Transfected cells showed increased activation of nine cell cycle-regulating transcription factors: the most prominent upregulation was of AMP-dependent transcription factor ATF3 (7.11-fold, p = 0.00056) which regulates the G1 phase. mHCN2-expressing hMSCs were attached and made anchorage-dependent connection with other cells without transmigration through a 12.7-μm thick Kapton® HN film with micromachined 1–3 μm diameter pores.ConclusionsmHCN2-expressing hMSCs preserved the major cell functions required for the generation of biological pacemakers: high viability, functional activity, but low proliferation rate through the arrest of cell cycle in the G1 phase. mHCN2-expressing hMSCs attached and grew on a Kapton® scaffold without transmigration, confirming the relevance of these cells for the generation of biological pacemakers.

Antimicrobial Properties of Diamond-Like Carbon/Silver Nanocomposite Thin Films Deposited on Textiles: Towards Smart Bandages

In the current work, a new antibacterial bandage was proposed where diamond-like carbon with silver nanoparticle (DLC:Ag)-coated synthetic silk tissue was used as a building block. The DLC:Ag structure, the dimensions of nanoparticles, the silver concentration and the silver ion release were studied systematically employing scanning electron microscopy, energy dispersive X-ray spectroscopy and atomic absorption spectroscopy, respectively. Antimicrobial properties were investigated using microbiological tests (disk diffusion method and spread-plate technique). The DLC:Ag layer was stabilized on the surface of the bandage using a thin layer of medical grade gelatin and cellulose. Four different strains of Staphylococcus aureus extracted from humans’ and animals’ infected wounds were used. It is demonstrated that the efficiency of the Ag+ ion release to the aqueous media can be increased by further RF oxygen plasma etching of the nanocomposite. It was obtained that the best antibacterial properties were demonstrated by the plasma-processed DLC:Ag layer having a 3.12 at % Ag surface concentration with the dominating linear dimensions of nanoparticles being 23.7 nm. An extra protective layer made from cellulose and gelatin with agar contributed to the accumulation and efficient release of silver ions to the aqueous media, increasing bandage antimicrobial efficiency up to 50% as compared to the single DLC:Ag layer on textile.

Femtosecond laser micro‐machined polyimide films for cell scaffold applications

Engineering of sophisticated synthetic 3D scaffolds that allow controlling behaviour and location of the cells requires advanced micro/nano‐fabrication techniques. Ultrafast laser micro‐machining employing a 1030‐nm wavelength Yb:KGW femtosecond laser and a micro‐fabrication workstation for micro‐machining of commercially available 12.7 and 25.4 μm thickness polyimide (PI) film was applied. Mechanical properties of the fabricated scaffolds, i.e. arrays of differently spaced holes, were examined via custom‐built uniaxial micro‐tensile testing and finite element method simulations. We demonstrate that experimental micro‐tensile testing results could be numerically simulated and explained by two‐material model, assuming that 2–6 μm width rings around the holes possessed up to five times higher Youngs modulus and yield stress compared with the rest of the laser intacted PI film areas of ‘dog‐bone’‐shaped specimens. That was attributed to material modification around the micro‐machined holes in the vicinity of the position of the focused laser beam track during trepanning drilling. We demonstrate that virgin PI films provide a suitable environment for the mobility, proliferation and intercellular communication of human bone marrow mesenchymal stem cells, and discuss how cell behaviour varies on the micro‐machined PI films with holes of different diameters (3.1, 8.4 and 16.7 μm) and hole spacing (30, 35, 40 and 45 μm). We conclude that the holes of 3.1 μm diameter were sufficient for metabolic and genetic communication through membranous tunneling tubes between cells residing on the opposite sides of PI film, but prevented the trans‐migration of cells through the holes. Copyright

Nitrogen-doped twisted graphene grown on copper by atmospheric pressure CVD from a decane precursor

We present Raman studies of graphene films grown on copper foil by atmospheric pressure CVD with n-decane as a precursor, a mixture of nitrogen and hydrogen as the carrier gas, under different hydrogen flow rates. A novel approach for the processing of the Raman spectroscopy data was employed. It was found that in particular cases, the various parameters of the Raman spectra can be assigned to fractions of the films with different thicknesses. In particular, such quantities as the full width at half maximum of the 2D peak and the position of the 2D graphene band were successfully applied for the elaborated approach. Both the G- and 2D-band positions of single layer fractions were blue-shifted, which could be associated with the nitrogen doping of studied films. The XPS study revealed the characteristics of incorporated nitrogen, which was found to have a binding energy around 402 eV. Moreover, based on the statistical analysis of spectral parameters and the observation of a G-resonance, the twisted nature of the double-layer fraction of graphene grown with a lower hydrogen feeding rate was demonstrated. The impact of the varied hydrogen flow rate on the structural properties of graphene and the nitrogen concentration is also discussed.

Periodic structures modified with silver nanoparticles for novel plasmonic application

Forming structures similar to or smaller than the optical wavelength offers a wide range of possibilities to modify the optical properties of materials. Tunable optical nanostructures can be applied as materials for surface-enhanced spectroscopy, optical filters, plasmonic devices, and sensors. In this work we present experimental results on technology and properties of periodical, polymer based optical structures modified by ordered adsorption of silver nanoparticles. These structures were formed combining UV hardening and dip coating from colloidal solutions. We have investigated the influence of silver nanoparticles assembly on the ambient conditions (deposition temperature and time) and surface features (periodicities and shape) of the template micro structures. Optical absorbance as well as morphology of the structures containing silver nanoparticles were investigated by UV-VIS spectroscopy, AFM, SEM and optical microscopy. The influence of silver nanoparticles on the optical properties of the structures was investigated by polarized light spectroscopy (Grating Light Reflection Spectroscopy - GLRS). From the results of this study we propose a low cost procedure for fabricating structures that could be potentially new type of plasmonic sensors exploiting surface enhanced plasmon resonance in silver nano structures.

Optical Properties of DLC-Ag Nanocomposite and Grating Structures on their Base

We present the study based on extended Maxwell-Garnett effective medium theory for the effective dielectric function of the diamond like carbon film with embedded silver nanoparticles (DLC-Ag) and rigorous coupled-wave analysis to evaluate resonance characteristics in a visible range of periodic 1-D grating structure on their base. The relief sub-wavelength grating structures on base DLC-Ag nanocomposite have been investigated for sensing applications.