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Dive into the research topics where Tomomi Kaku is active.

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Featured researches published by Tomomi Kaku.


Molecular Plant | 2009

Xyloglucan for Generating Tensile Stress to Bend Tree Stem

Kei'ichi Baba; Yong Woo Park; Tomomi Kaku; Rumi Kaida; Miyuki Takeuchi; Masato Yoshida; Yoshihiro Hosoo; Yasuhisa Ojio; Takashi Okuyama; Toru Taniguchi; Yasunori Ohmiya; Teiji Kondo; Ziv Shani; Oded Shoseyov; Tatsuya Awano; Satoshi Serada; Naoko Norioka; Shigemi Norioka; Takahisa Hayashi

In response to environmental variation, angiosperm trees bend their stems by forming tension wood, which consists of a cellulose-rich G (gelatinous)-layer in the walls of fiber cells and generates abnormal tensile stress in the secondary xylem. We produced transgenic poplar plants overexpressing several endoglycanases to reduce each specific polysaccharide in the cell wall, as the secondary xylem consists of primary and secondary wall layers. When placed horizontally, the basal regions of stems of transgenic poplars overexpressing xyloglucanase alone could not bend upward due to low strain in the tension side of the xylem. In the wild-type plants, xyloglucan was found in the inner surface of G-layers during multiple layering. In situ xyloglucan endotransglucosylase (XET) activity showed that the incorporation of whole xyloglucan, potentially for wall tightening, began at the inner surface layers S1 and S2 and was retained throughout G-layer development, while the incorporation of xyloglucan heptasaccharide (XXXG) for wall loosening occurred in the primary wall of the expanding zone. We propose that the xyloglucan network is reinforced by XET to form a further connection between wall-bound and secreted xyloglucans in order to withstand the tensile stress created within the cellulose G-layer microfibrils.


Molecular Plant | 2009

Loosening xyloglucan accelerates the enzymatic degradation of cellulose in wood.

Rumi Kaida; Tomomi Kaku; Kei'ichi Baba; Masafumi Oyadomari; Takashi Watanabe; Koji Nishida; Toshiji Kanaya; Ziv Shani; Oded Shoseyov; Takahisa Hayashi

In order to create trees in which cellulose, the most abundant component in biomass, can be enzymatically hydrolyzed highly for the production of bioethanol, we examined the saccharification of xylem from several transgenic poplars, each overexpressing either xyloglucanase, cellulase, xylanase, or galactanase. The level of cellulose degradation achieved by a cellulase preparation was markedly greater in the xylem overexpressing xyloglucanase and much greater in the xylems overexpressing xylanase and cellulase than in the xylem of the wild-type plant. Although a high degree of degradation occurred in all xylems at all loci, the crystalline region of the cellulose microfibrils was highly degraded in the xylem overexpressing xyloglucanase. Since the complex between microfibrils and xyloglucans could be one region that is particularly resistant to cellulose degradation, loosening xyloglucan could facilitate the enzymatic hydrolysis of cellulose in wood.


Journal of Wood Science | 2009

Proteomic analysis of the G-layer in poplar tension wood

Tomomi Kaku; Satoshi Serada; Kei’ichi Baba; Fumio Tanaka; Takahisa Hayashi

Angiosperm trees bend their stems by forming tension wood at the upper side of leaning stems. Most tension wood has a cellulose-rich G-layer in the innermost surface of the fiber cell wall. Strong tensile stress is considered to occur in the G-layer. This study undertook to identify the proteins involved in G-layer formation and function through a proteomic analysis of G-layer-localized protein. G-layers of poplar were loosened by sonication and isolated as doughnut-shaped pieces of thinly sliced transverse sections. The proteins, once extracted with urea/detergent solution, were separated by two-dimensional polyacrylamide gel electrophoresis, and 110 spots were subjected to liquid chromatography tandem mass spectrometry (LC/MS/MS). A database search for these spots’ mass spectrum patterns identified 72 proteins. In addition, all peptide digestion mixtures of G-layer proteins were separated by strong cation exchange chromatography and 39 proteins were identified using LC/MS/MS analysis. Proteins involved in wall formation, such as lignin biosynthesis-related protein, xyloglucan endotransglucosylase, and fasciclin-like arabinogalactan protein, were notably detected in the G-layer.


Plant Physiology | 2009

Activation of β-Glucan Synthases by Wall-Bound Purple Acid Phosphatase in Tobacco Cells

Rumi Kaida; Yumi Satoh; Vincent Bulone; Yohko Yamada; Tomomi Kaku; Takahisa Hayashi; Takako Kaneko

Wall-bound purple acid phosphatases have been shown to be potentially involved in the regulation of plant cell growth. The aim of this work was to further investigate the function of one of these phosphatases in tobacco (Nicotiana tabacum), NtPAP12, using transgenic cells overexpressing the enzyme. The transgenic cells exhibited a higher level of phosphatase activity in their walls. The corresponding protoplasts regenerating a cell wall exhibited a higher rate of β-glucan synthesis and cellulose deposition was increased in the walls of the transgenic cells. A higher level of plasma membrane glucan synthase activities was also measured in detergent extracts of membrane fractions from the transgenic line, while no activation of Golgi-bound glycan synthases was detected. Enzymatic hydrolysis and methylation analysis were performed on the products synthesized in vitro by the plasma membrane enzymes from the wild-type and transgenic lines extracted with digitonin and incubated with radioactive UDP-glucose. The data showed that the glucans consisted of callose and cellulose and that the amount of each glucan synthesized by the enzyme preparation from the transgenic cells was significantly higher than in the case of the wild-type cells. The demonstration that callose and cellulose synthases are activated in cells overexpressing the wall-bound phosphatase NtPAP12 suggests a regulation of these carbohydrate synthases by a phosphorylation/dephosphorylation process, as well as a role of wall-bound phosphatases in the regulation of cell wall biosynthesis.


Plant Physiology | 2008

Overexpression of Poplar Cellulase Accelerates Growth and Disturbs the Closing Movements of Leaves in Sengon

Sri Hartati; Enny Sudarmonowati; Yong Woo Park; Tomomi Kaku; Rumi Kaida; Kei'ichi Baba; Takahisa Hayashi

In this study, poplar (Populus alba) cellulase (PaPopCel1) was overexpressed in a tropical Leguminosae tree, sengon (Paraserianthes falcataria), by the Agrobacterium tumefaciens method. PaPopCel1 overexpression increased the length and width of stems with larger leaves, which showed a moderately higher density of green color than leaves of the wild type. The pairs of leaves on the transgenic plants closed more slowly during sunset than those on the wild-type plants. When main veins from each genotype were excised and placed on a paper towel, however, the leaves of the transgenic plants closed more rapidly than those of the wild-type plant. Based on carbohydrate analyses of cell walls, the leaves of the transgenic plants contained less wall-bound xyloglucan than those of the wild-type plants. In situ xyloglucan endotransglucosylase activity showed that the incorporation of whole xyloglucan, potentially for wall tightening, occurred in the parenchyma cells (motor cells) of the petiolule pulvinus attached to the main vein, although the transgenic plant incorporated less whole xyloglucan than the wild-type plant. These observations support the hypothesis that the paracrystalline sites of cellulose microfibrils are attacked by poplar cellulase, which loosens xyloglucan intercalation, resulting in an irreversible wall modification. This process could be the reason why the overexpression of poplar cellulase both promotes plant growth and disturbs the biological clock of the plant by altering the closing movements of the leaves of the plant.


Russian Journal of Plant Physiology | 2010

Loosening xyloglucan prevents tensile stress in tree stem bending but accelerates the enzymatic degradation of cellulose

Takahisa Hayashi; Rumi Kaida; Tomomi Kaku; Kei'ichi Baba

In response to environmental variation, xyloglucan could fix the microfibrils to the inner surface of the wall to withstand the tensile stress generated within the G-layer. This would explain why the basal regions of stems of transgenic poplars overexpressing xyloglucanase could not bend upward. This finding has ramifications for the production of bioethanol, which requires tree cellulose to be enzymatically hydrolyzed. The level of cellulose degradation with enzymes was markedly increased in the xylem overexpressing xyloglucanase. We propose that xyloglucan serves as a key hemicellulose and a tightening tether of cellulose microfibrils in the secondary walls.


Phycological Research | 2008

Presence of xyloglucan‐like polysaccharide in Spirogyra and possible involvement in cell–cell attachment

Hisato Ikegaya; Takahisa Hayashi; Tomomi Kaku; Kazuyoshi Iwata; Seiji Sonobe; Teruo Shimmen

By methylation analysis, it was found that the cell walls of Spirogyra contained 4,6‐linked glucose, 4‐linked glucose and terminal xylose, which could be components of xyloglucan. Immunocytochemical analysis was carried out using an anti‐serum against xyloglucan. After removal of pectic substances, the cell walls of both rhizoid cells and inner cells were stained. Crude protein extract from Spirogyra had a hydrolase activity for xyloglucans. In addition, the exogenously applied xyloglucan prevented the detachment of the cell wall of the severed cell. Involvement of xyloglucan‐like polysaccharide in cell–cell attachment was discussed.


Journal of Wood Science | 2009

Enzymatic saccharification and ethanol production of Acacia mangium and Paraserianthes falcataria wood, and Elaeis guineensis trunk

Rumi Kaida; Tomomi Kaku; Kei’ichi Baba; Masafumi Oyadomari; Takashi Watanabe; Sri Hartati; Enny Sudarmonowati; Takahisa Hayashi

We examined the saccharification and fermentation of meals from Acacia mangium wood, Paraserianthes falcataria wood, and Elaeis guineensis trunk. The levels of enzymatic hydrolysis of cellulose and ethanol production were highest for P. falcataria wood and lowest for A. mangium wood. Ultrasonication pretreatment of meal further increased the rates of hydrolysis and ethanol production in meal from P. falcataria wood. Through this pretreatment, hemicelluloses (xylan and xyloglucan) and cellulose were released in the meal from P. falcataria wood. Loosening of hemicellulose associations can be expected to make P. falcataria wood more useful for bioethanol production.


Journal of Wood Science | 2011

Improvement of fermentable sugar yields of mangium through transgenic overexpression of xyloglucanase

Tomomi Kaku; Rumi Kaida; Kei’ichi Baba; Sri Hartati; Enny Sudarmonowati; Takahisa Hayashi

Recalcitrance to saccharifi cation is a major limiting factor of the conversion of lignocellulosic biomass to ethanol. Levels of wood saccharification and subsequent ethanol production were higher in transgenic mangium (Acacia mangium) trees overexpressing xyloglucanase than in wild-type plants, even after delignification of the wood. We propose that a decrease in the quantity of xyloglucan that is intercalated into cellulose microfibrils could facilitate the process of saccharification.


Journal of Wood Science | 2009

Enhancement of saccharification by overexpression of poplar cellulase in sengon

Rumi Kaida; Tomomi Kaku; Kei’ichi Baba; Sri Hartati; Enny Sudarmonowati; Takahisa Hayashi

Lignocellulosic material from trees has great potential to form the basis of the second generation for bioethanol production because trees produce most of the biomass on the earth. We modified the wall structure of sengon (Paraserianthes falcataria) through overexpression of poplar cellulase in the cell walls. The overexpression did not decrease cellulose content but caused a decrease in xyloglucan bound to the walls. The level of saccharification and successive ethanol production was increased in the wood of the transgenic sengon overexpressing poplar cellulase compared with that of the wild type plant, and even after delignification of the wood. We propose that a xyloglucan intercalated into cellulose microfibrils could be one of the recalcitrant components in the saccharification of lignocelluloses.

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Enny Sudarmonowati

Indonesian Institute of Sciences

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Sri Hartati

Indonesian Institute of Sciences

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