Ulrich H.N. Dürr

The Magic of Bicelles Lights Up Membrane Protein Structure

1.1. Why Study Membranes and Membrane Proteins? Biological membranes and membrane proteins, responsible for numerous exciting biological processes, present one of the paramount challenges in biophysics today. Membranes are present in great number and variety in all organisms. They form the boundary between the inside and outside for any bacterium or cell, and they delimit the host of organelles that make up their inner subunits. Each biological membrane is made up of dozens of different types of lipids and sterols, and any particular type of membrane has a characteristic content of these different constituents. As a very basic example, we mention that prokaryotic membranes contain a notable component of negatively charged lipids but almost no cholesterol, while eukaryotic membranes are mostly zwitterionic but have a significant amount of cholesterol. Since the driving biophysical principles of membrane formation are very simple—they lie in the amphipathic properties of any lipid molecule—a single lipid type is sufficient to form membrane-like bilayers in an aqueous environment. Such model membranes are used extensively to study biophysical properties that are representative for most membrane systems. A particularly interesting effect is observed when detergent molecules are added to lipid bilayer samples: the detergents solubilize the bilayers, and in certain regimes so-called bilayered mixed micelles or “bicelles” are formed. In the simplest case, they can be described as microscopic disks where a bilayer patch is encircled by a “rim” of detergent molecules. Bicelles represent a new instance of lipid morphology and are extensively applicable to structural studies of lipid membranes and protein structure.1 Membranes delimit any cell and all of its compartments. They form natural borders for metabolic substances and signaling molecules. Membrane proteins are the porters and gatekeepers that make sure that only proper molecules or signals make it across the membrane. Since membrane proteins perform numerous key functions in cell metabolism and signaling, they contribute over 30% of the genes in typical eukaryotic genomes,2 and they form the targets for over 50% of drugs in use today.3 The number of elucidated structures of membrane proteins has grown exponentially after the first structure was published in 1985, thus equaling the rate at which structure determination of soluble proteins emerged early on.4 Still, the number of available high-resolution structures of membrane proteins is limited. There are Internet sites that keep track of newly published structures of membrane proteins. The crystallography-oriented Web site of Dr. Stephen White [http://blanco.biomol.uci.edu/mpstruc] has recently been joined by another site maintained by Dr. Dror Warschawski that is dedicated to structures of membrane proteins elucidated by nuclear magnetic resonance (NMR) spectroscopy [www.drorlist.com/nmr/MPNMR.html]. Another equally important site of Dr. Hartmut Michel [www.mpibp-frankfurt.mpg.de/michel/public/memprotstruct.html] with an emphasis on crystallization conditions is no longer updated, but states that access is still enabled. In this review article, we aim to give a general overview of lipid bicelles as employed in the study of protein structure. Recent advances in the field of protein structural biology that have been made possible by exploiting the unique properties of lipid bicelles, in both solution and solid-state NMR spectroscopy, will be discussed. During the last five years, review contributions have presented bicelles either within the far more general context of reconstitution media for solution NMR studies (see section 1.4) or have focused on macroscopically aligned bicelles as used for solid-state NMR studies.5,6 One very recent contribution has tackled the formidable task of reviewing all membrane mimetics employed in both solution and solid-state NMR studies.7 As mentioned above, we will limit the contents of this review article to applications of lipid bicelles, but will cover both the isotropic and the aligned bicelles as used in NMR studies. Some parts of this article can be viewed as an update on the review articles of Opella and Marassi,8 Marcotte and Auger,9 and Prosser et al.10 In addition, some of our own recent research involving bicelles is presented in detail.

Solid-State NMR Reveals the Hydrophobic-Core Location of Poly(amidoamine) Dendrimers in Biomembranes

Poly(amidoamine) (PAMAM) dendrimer nanobiotechnology shows great promise in targeted drug delivery and gene therapy. Because of the involvement of cell membrane lipids with the pharmacological activity of dendrimer nanomedicines, the interactions between dendrimers and lipids are of particular relevance to the pharmaceutical applications of dendrimers. In this study, solid-state NMR was used to obtain a molecular image of the complex of generation-5 (G5) PAMAM dendrimer with the lipid bilayer. Using (1)H radio frequency driven dipolar recoupling (RFDR) and (1)H magic angle spinning (MAS) nuclear Overhauser effect spectroscopy (NOESY) techniques, we show that dendrimers are thermodynamically stable when inserted into zwitterionic lipid bilayers. (14)N and (31)P NMR experiments on static samples and measurements of the mobility of C-H bonds using a 2D proton detected local field protocol under MAS corroborate these results. The localization of dendrimers in the hydrophobic core of lipid bilayers restricts the motion of bilayer lipid tails, with the smaller G5 dendrimer having more of an effect than the larger G7 dendrimer. Fragmentation of the membrane does not occur at low dendrimer concentrations in zwitterionic membranes. Because these results show that the amphipathic dendrimer molecule can be stably incorporated in the interior of the bilayer (as opposed to electrostatic binding at the surface), they are expected to be useful in the design of dendrimer-based nanobiotechnologies.

When detergent meets bilayer: birth and coming of age of lipid bicelles.

Lipids spontaneously form bilayered structures when brought into an aqueous environment. This is the foundation in the architecture of biological cell membranes. However, lipid bilayers do not lend themselves easily to common biophysical studies; be it of the bilayer itself or of embedded membrane proteins. Detergents, on the other hand, form small aggregates known as micelles that readily solubilize membrane proteins and are well-suited for numerous biophysical methods. However, they are not excellent models of biological membranes as they may denature the structure of a protein and the curvature of the micelle may impose a non-native protein folding. When lipid and detergent meet in an aqueous environment, entities with wholly different properties are formed: lipid bicelles. Bicelles are made of patches of lipid bilayers that are either encircled or perforated by detergent ‘rims’. They combine the advantages of both components alone (micelle and lipid bilayer), namely being good models for a biological membrane and having advantageous properties for biophysical experiments. An additional advantage of certain bicelle preparations is their tendency to macroscopically align when brought into a magnetic field. This fact has been exploited not only in the highresolution structural and dynamics studies of membrane proteins, but also for globular proteins using nuclear magnetic resonance (NMR) experiments. Fig. 1 gives a graphical introduction to the two types of bicellar phases most commonly employed. At a high detergent concentration and low temperatures, isotropically tumbling disk-like aggregates are formed, the so-called isotropic bicelles (Fig. 1B). At a high lipid concentration and in certain temperature ranges, extended bilayered lamellae are formed that are perforated or delimited by detergent, and have the potential for magnetic alignment (Fig. 1D). Cryo-transmission electron microscopy (TEM) micrographs (A, C) of bicelles taken from the literature [1] are also included in Fig. 1. Fig. 1 Lipid bicelles are supramolecular aggregates that are formed when appropriate amounts of lipids and detergents are mixed in an aqueous environment. The size and phase of bicellar aggregates depend on the [lipid]:[detergent] ratio as well as on the temperature. ... Since their first description in 1988, the great potential of bicelles in the study of membrane proteins and proteins in general has been realized. A steady stream of remarkable insights and applications has emerged that is still growing in size. In the present contribution, we will give an introduction to the properties of lipid bicelle phases with an emphasis on NMR experimental measurements. In addition, we will discuss some of the most exciting recent applications of bicelles in the structural and dynamic studies of membrane proteins.

Bicelle-Enabled Structural Studies on a Membrane-Associated Cytochrome b5 by Solid-State MAS NMR Spectroscopy†

membrane proteins still remain a great challenge, mainly because of the difficulty in finding a well-behaved model membrane. The use of multi-lamellar vesicles containing a transmembrane protein could enable the application of solidstate NMR spectroscopic techniques, but they are not usually suitable, as membrane proteins containing large soluble domains may not fold well to result in high-resolution spectra. Obtaining high-resolution spectra is a mandatory first step in solving the protein structure using NMR spectroscopy. In this study we demonstrate that bicelles [2] are suitable to overcome

Dynamic Interaction Between Membrane-Bound Full-Length Cytochrome P450 and Cytochrome b5 Observed by Solid-State NMR Spectroscopy

Microsomal monoxygenase enzymes of the cytochrome-P450 family are found in all biological kingdoms, and play a central role in the breakdown of metabolic as well as xenobiotic, toxic and 70% of the drugs in clinical use. Full-length cytochrome-b5 has been shown to be important for the catalytic activity of cytochrome-P450. Despite the significance in understanding the interactions between these two membrane-associated proteins, only limited high-resolution structural information on the full-length cytochrome-P450 and the cytochromes-b5-P450 complex is available. Here, we report a structural study on a functional ~72-kDa cytochromes-b5-P450 complex embedded in magnetically-aligned bicelles without having to freeze the sample. Functional and solid-state NMR (Nuclear Magnetic Resonance) data reveal interactions between the proteins in fluid lamellar phase bilayers. In addition, our data infer that the backbone structure and geometry of the transmembrane domain of cytochrome-b5 is not significantly altered due to its interaction with cytochrome-P450, whereas the mobility of cytochrome-b5 is considerably reduced.