V. K. Shumny

The role of alternative translation start sites in the generation of human protein diversity

According to the scanning model, 40S ribosomal subunits initiate translation at the first (5′ proximal) AUG codon they encounter. However, if the first AUG is in a suboptimal context, it may not be recognized, and translation can then initiate at downstream AUG(s). In this way, a single RNA can produce several variant products. Earlier experiments suggested that some of these additional protein variants might be functionally important. We have analysed human mRNAs that have AUG triplets in 5′ untranslated regions and mRNAs in which the annotated translational start codon is located in a suboptimal context. It was found that 3% of human mRNAs have the potential to encode N-terminally extended variants of the annotated proteins and 12% could code for N-truncated variants. The predicted subcellular localizations of these protein variants were compared: 31% of the N-extended proteins and 30% of the N-truncated proteins were predicted to localize to subcellular compartments that differed from those targeted by the annotated protein forms. These results suggest that additional AUGs may frequently be exploited for the synthesis of proteins that possess novel functional properties.

Characteristics of the cytomictic channel formation in Nicotiana tabacum L. pollen mother cells

Electron-microscopic analysis of cytomictic channels formation in the pollen mother cells in tobacco at the stage of meiosis prophase I of anthers has been conducted. The cytomictic channels in the pollen mother cells in tobacco have been established to be formed under the basis of both single plasmodesmata and de novo with the involvement of specific electron-dense bodies. The role of cytomictic channels in microsporogenesis regulation is discussed.

Peculiarities of cytomixis in pollen mother cells of transgenic tobacco plants (Nicotiana tabacum L.) with mutant phenotype

The frequency characteristics and cytological picture of cytomixis in the course of male meiosis are described in transgenic tobacco plants (Nicotiana tabacum L.) with altered flower morphology and male sterility. Effects of cytomixis on qualitative composition of meiotic products are studied (formation of cytoplasts and polyads). Doubling of the chromosome number was established to increase frequency of cytomixis in the studied plants.

[Production of wheat-rye substitution lines and identification of chromosome composition of karyotypes using C-banding, GISH, and SSR markers].

Based on the cross (Triticum aestivum L. × Secale cereale L.) × T. aestivum L., wheat-rye substitution lines (2n = 42) were produced with karyotypes containing, instead of a pair of homologous wheat chromosomes, a homeologous pair of rye chromosomes. The chromosome composition of these lines was described by GISH and C-banding methods, and SSR analysis. The results of genomic in situ hybridization demonstrated that karyotype of these lines included one pair of rye chromosomes each and lacked wheat-rye translocations. C-banding and SSR markers were used to identify rye chromosomes and determine the wheat chromosomes at which the substitution occurred. The lines were designated 1R(1D), 2R(2D)2, 2R(2D)3, 3R(3B), 6R(6A)2. The chromosome composition of lines 1R(1A), 2R(W)1, 5R(W), 5R(5A), and 6R(W)1, which were earlier obtained according to the same scheme for crossing, was characterized using methods of telocentric analysis, GISH, C-banding, and SSR analysis. These lines were identified as 1R(1A), 2R(2D)1, 5R(5D), 5R(5A), and 6R(6A)1, C-banding of chromosomes belonging to line 1R(1A) revealed the presence of two translocated chromosomes (3DS.3DL-del. and 4AL.W) during simultaneous amplification of SSR markers located on 3DL and 4AS arms. The “combined” long arm of the newly derived chromosome 4A is assumed to be formed from the long arm of chromosome 4AS itself and a deleted segment 3DL. All examined lines are cytologically stable, except for 3R(3B), which does not affect the stability of rye 3R chromosome transfer. Chromosome identification and classification of the lines will permit them to be models for genetic studies that can be used thereafter as promising “secondary gene pools” for the purpose of plant breeding.

Protection of transgenic tobacco plants expressing bovine pancreatic ribonuclease against tobacco mosaic virus

Transgenic tobacco plants (Nicotiana tabacum cv. SR1) expressing extracellular pancreatic ribonuclease from Bos taurus and characterized by an increased level of ribonuclease activity in leaf extracts were challenged with tobacco mosaic virus. The transgenic plants exhibited a significantly higher level of protection against the virus infection than the control non-transformed plants. The protection was evidenced by the absence (or significant delay) of the appearance of typical mosaic symptoms and the retarded accumulation of infectious virus and viral antigen. These results demonstrate that modulation of extracellular nuclease expression can be efficiently used in promoting protection against viral diseases.

Tobacco Transformants Bearing Antisense Suppressor of Proline Dehydrogenase Gene, Are Characterized by Higher Proline Content and Cytoplasm Osmotic Pressure

The antisense suppressor was constructed for proline dehydrogenase gene (PDH; a fragment of PDH from Arabidopsis in antisense orientation and under the control of 35S promoter of cauliflower mosaic virus, CMV). In Nicotiana tabacum SR1 tobacco transformants bearing antisense suppressor for PDH, the proline content and the cytoplasm osmotic pressure were increased. The proline content in these transformants varied, whereas cytoplasm osmotic pressure was stable, which seems to reflect complicated relationships between these characteristics of the plant cell.

Meiotic restitution in amphihaploids in the tribe Triticeae

In haploid and diploid organisms of the plant kingdom, meiotic division of diploid cells proceeds in two consecutive stages, with DNA replicating only once. In amphihaploids (interspecific or intergeneric hybrids), where homologs are absent, the reduction of the chromosome number does not occur, meiosis is abnormal, and the plants are sterile. Gamete viability in F1 hybrids is ensured by a single division when chromosomes are separated into sister chromatids in either the first or the second division. Such gametes ensure partial fertility of amphihaploids, thereby facilitating their survival and stabilization of the polygenome. The frequency of the formation of viable gametes varies from a few cases to 98.8% in different anthers of the hybrids. Here, studies on the cytological mechanisms and genetic control of chromosome unreduction or restitution in different amphihaploids of the tribe Triticeae are reviewed. The current notions on the control of formation of restitution nuclei based on the principles of a prolonged metaphase I and different types of meiocytes. The main terms used for systematization of restitution mechanisms are first-division restitution (FDR), single-division meiosis (SDM), and unreductional meiotic cell division (UMCD). It has been assumed that archesporial cells of wide hybrids may have two cell division programs, the meiotic and the mitoyic ones The possible approaches to the analysis of the genetic control of chromosome restitution in amphihaploids are discussed.

Evolutionary History of Wheats—the Main Cereal of Mankind

An attempt in integrating the results of different comparative-genetic analyses of wheats and their molecular taxonomy has been made; the correspondence of earlier evolutionary specifications to the phylogeny within the genus Triticum species has been estimated. The relationships have been established based on chloroplast and nuclear DNA sequence data. One phylogenetic tree has been constructed based on the chloroplast sequences, and several phylogenetic groups have been found within the genera Triticum and Aegilops. It has been shown that Aegilops speltoides was a donor of the plasmon for all polyploid wheat species, whereas the chloroplast genomes of the diploid Triticum species are close to other Aegilops species. Nuclear Acc-1 and Pgk-1 genes have been used as molecular markers for the A and B genomes of the Triticum species. No variability has been found in these genes within polyploid wheats. In contrast, three variants of these genes have been detected in diploid A genome Triticum. The detailed analysis showed that one of these variants was a progenitor for all A genomes of all polyploid Triticum species; the second variant is close to the B genomes of Ae. speltoides; and the third one is unique for wild diploid wheats. The inheritance of two domesticated and taxonomically important characters was studied in the ancient hexaploid wheat Triticum antiquorum. It was shown that the recessive gene controlling spherical grain was allelic to the s gene determining the same character in the endemic Indian species T. sphaerococcum. The dominant genes of T. antiquorum and T. sphaerococcum controlling compact ears were proved to be non-allelic to the corresponding T. compactum gene. Results of molecular analysis indicated the close relationship of all hexaploid wheat species.

PR-proteins with ribonuclease activity and plant resistance against pathogenic fungi

Pathogenesis-related (PR) proteins participate in complex plant defense responses to pathogens. It is known that members of two PR-protein families (PR4 and PR10) exhibit ribonuclease activity in some cases. These proteins were found to be able to inhibit the growth of pathogenic fungi, and ribonuclease activity is necessary for the manifestation of this effect. This paper presents current data on molecular mechanisms governing the antifungal activity of PR-ribonucleases, associated both with their direct cytotoxic impact on pathogen cells and with their possible participation in the induction of plant cell apoptosis and development of hypersensitive reactions (HR).

Role of Microtubular Cytoskeleton and Callose Walls in the Manifestation of Cytomixis in Pollen Mother Cells of Tobacco Nicotiana tabacum L.

The structure and dynamics of microtubular cytoskeleton and of callose walls in normal pollen mother cells (PMC) of tobacco N. tabacum L. and in cells with intercellular translocation of nuclear material (cytomictic) was studied in the course of the cell cycle. The microtubular cytoskeleton was established as playing no obvious role in the process of cytomixis. The elevated level of cytomictic seems to be due to disturbances of synthesis of callose walls as a result of their attenuation and perforation. Possible causes of cytomictic in tobacco PMC at the cellular level are discussed.