V. R. Srinivas
Indian Institute of Science
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Journal of Biological Chemistry | 1999
G Bhanuprakash Reddy; V. R. Srinivas; Nisar Ahmad; Avadhesha Surolia
A central question in biological chemistry is the minimal structural requirement of a protein that would determine its specificity and activity, the underlying basis being the importance of the entire structural element of a protein with regards to its activityvis à vis the overall integrity and stability of the protein. Although there are many reports on the characterization of protein folding/unfolding intermediates, with considerable secondary structural elements but substantial loss of tertiary structure, none of them have been reported to show any activity toward their respective ligands. This may be a result of the conditions under which such intermediates have been isolated or due to the importance of specific structural elements for the activity. In this paper we report such an intermediate in the unfolding of peanut agglutinin that seems to retain, to a considerable degree, its carbohydrate binding specificity and activity. This result has significant implications on the molten globule state during the folding pathway(s) of proteins in general and the quaternary association in legume lectins in particular, where precise subunit topology is required for their biologic activities.
FEBS Letters | 1998
V. R. Srinivas; Netai C. Singha; Fredrick P. Schwarz; A. Surolia
Differential scanning calorimetry of solutions of WBAII and in presence of sugar ligands shows that WBAII dimer dissociates to its constituent monomeric subunits at the denaturation temperature. The thermal denaturation of WBAII consists of the unfolding of two independent domains of WBAII similar to that of basic winged bean lectin and ECorL and in contrast to concanavalin A (conA), pea and lentil lectin, which unfold as single entities. Apparently, the glycosylation reduces the structural integrity of WBAII as compared to conA, pea and lentil lectin. The increase in the denaturation temperature of the sugar‐lectin complexes yields binding constants close to the binding constants extrapolated from the ITC results and confirms the mechanism proposed for its thermal unfolding.
FEBS Letters | 1999
V. R. Srinivas; G Bhanuprakash Reddy; A. Surolia
The thermodynamics of binding of winged bean (Psophocarpus tetragonolobus) acidic agglutinin to the H‐antigenic oligosaccharide (Fucα1‐2Galβ1‐4GlcNAc‐oMe) and its deoxy and methoxy congeners were determined by isothermal titration calorimetry. We report a relatively hydrophobically driven binding of winged bean acidic agglutinin to the congeners of the above sugar. This conclusion is arrived, from the binding parameters of the fucosyl congeners, the nature of the enthalpy‐entropy compensation plots and the temperature dependence of binding enthalpies of some of the congeners. Thus, the binding site of winged bean acidic agglutinin must be quite extended to accommodate the trisaccharide, with non‐polar loci that recognize the fucosyl moiety of the H‐antigenic determinant.
FEBS Letters | 1996
Vivek Sharma; V. R. Srinivas; Avadhesha Surolia
We report cloning of the DNA encoding winged bean basic agglutinin (WBA I). Using oligonucleotide primers corresponding to N‐ and C‐termini of the mature lectin, the complete coding sequence for WBA I could be amplified from genomic DNA. DNA sequence determination by the chain termination method revealed the absence of any intervening sequences in the gene. The DNA deduced amino acid sequence of WBA I displayed some differences with its primary structure established previously by chemical means. Comparison of the sequence of WBA I with that of other legume lectins highlighted several interesting features, including the existence of the largest specificity determining loop which might account for its oligosaccharide‐binding specificity and the presence of an additional N‐glycosylation site. These data also throw some light on the relationship between the primary structure of the protein and its probable mode of dimerization.
FEBS Letters | 2000
V. R. Srinivas; Shreeta Acharya; Suman Rawat; Vivek Sharma; Avadhesha Surolia
The amino acid sequence of the winged bean acidic lectin (WBA II) was determined by chemical means and by recombinant techniques. From the N‐ and C‐terminal sequence, obtained chemically, primers were designed for PCR amplification of the genomic DNA. The PCR product was cloned and sequenced to get the complete primary structure of WBA II. Peptide fragments for sequencing were also obtained by tryptic cleavages of the native lectin. The WBA II sequence showed a high degree of homology with that of WBA I and Erythrina corallodendron lectin (ECorL), especially in the regions involved in subunit association, where there is a very high conservation of residues. This perhaps implies the importance of this particular region in subunit interactions in this lectin. In addition, many of the residues, involved in carbohydrate binding in legume lectins, appear to be conserved in WBA II. The distinct differences in anomeric specificity observed amongst WBA I, WBA II, ECorL and peanut agglutinin (PNA) may be explained by subtle differences in sequence/structure of their D‐loops. WBA II binds adenine quite strongly; a putative adenine binding sequence has been identified.
Bioscience Reports | 1999
Mukesh Kumar; Aruna K. Behera; Sanjay Kumar; V. R. Srinivas; Hasi R. Das; Avadhesha Surolia; Rakha H. Das
Peanut (Arachis hypogaea) seed lectin, PNA is widely used to identify tumor specific antigen (T-antigen), Galβ1-3GalNAc on the eukaryotic cell surface. The functional amino acid coding region of a cDNA clone, pBSH-PN was PCR amplified and cloned downstream of the polyhedrin promoter in the Autographa californica nucleopolyhedrovirus (AcNPV) based transfer vector pVL1393. Co-transfection of Spodoptera frugiperda cells (Sf9) with the transfer vector, pAcPNA and AcRP6 (a recombinant AcNPV having B-gal downstream of the polyhedrin promoter) DNAs produced a recombinant virus, AcPNA which expresses PNA. Infection of suspension culture of Sf9 cells with plaque purified AcPNA produced as much as 9.8 mg PNA per liter (2.0 × 106 cells/ml) of serum-free medium. Intracellularly expressed protein (re-PNA) was purified to apparent homogeneity by affinity chromatography using ECD-Sepharose. Polyclonal antibodies against natural PNA (n-PNA) cross-reacted with re-PNA. The subunit molecular weight (30kDa), hemagglutination activity, and carbohydrate specificity of re-PNA were found to be identical to that of n-PNA, thus confirming the abundant production of a functionally active protein in the baculovirus expression system.
Bioscience Reports | 2001
V. R. Srinivas; Kiran Bachhawat-Sikder; Saman Habib; Seyed E. Hasnain; Avadhesha Surolia
In this paper we report the successful expression of the winged bean basic agglutinin (WBA I) in insect cells infected with a recombinant baculovirus carrying the WBA I gene and its characterization in terms of its carbohydrate binding properties. The expressed protein appears to have a lower molecular weight than the native counterpart which is consistent with the lack of glycosylation of the former. Moreover, the expressed protein maintains its dimeric nature. Hence, a role for glycosylation in modulation of dimerization of WBA I is ruled out unlike Erythrina corallodendron (EcorL). Despite this the protein is active, with its sugar specificity unaltered.
Biochimica et Biophysica Acta | 2001
V. R. Srinivas; G Bhanuprakash Reddy; Nisar Ahmad; Chittoor P. Swaminathan; Nivedita Mitra; Avadhesha Surolia
Biochemistry | 2002
Nivedita Mitra; V. R. Srinivas; T. N. C. Ramya; Nisar Ahmad; G. Bhanuprakash Reddy; Avadhesha Surolia
Biochemistry | 1998
Nisar Ahmad; V. R. Srinivas; G. Bhanuprakash Reddy; Avadhesha Surolia