Wade H. Elmer

A review of the use of engineered nanomaterials to suppress plant disease and enhance crop yield

Nanotechnology has the potential to play a critical role in global food production, food security, and food safety. The applications of nanotechnology in agriculture include fertilizers to increase plant growth and yield, pesticides for pest and disease management, and sensors for monitoring soil quality and plant health. Over the past decade, a number of patents and products incorporating nanomaterials into agricultural practices (e.g., nanopesticides, nanofertilizers, and nanosensors) have been developed. The collective goal of all of these approaches is to enhance the efficiency and sustainability of agricultural practices by requiring less input and generating less waste than conventional products and approaches. This review evaluates the current literature on the use of nanoscale nutrients (metals, metal oxides, carbon) to suppress crop disease and subsequently enhance growth and yield. Notably, this enhanced yield may not only be directly linked to the reduced presence of pathogenic organisms, but also to the potential nutritional value of the nanoparticles themselves, especially for the essential micronutrients necessary for host defense. We also posit that these positive effects are likely a result of the greater availability of the nutrients in the “nano” form. Last, we offer comments on the current regulatory perspective for such applications.

One fungus, one name

In this letter, we advocate recognizing the genus Fusarium as the sole name for a group that includes virtually all Fusarium species of importance in plant pathology, mycotoxicology, medicine, and basic research. This phylogenetically guided circumscription will free scientists from any obligation to use other genus names, including teleomorphs, for species nested within this clade, and preserve the application of the name Fusarium in the way it has been used for almost a century. Due to recent changes in the International Code of Nomenclature for algae, fungi, and plants, this is an urgent matter that requires community attention. The alternative is to break the longstanding concept of Fusarium into nine or more genera, and remove important taxa such as those in the F. solani species complex from the genus, a move we believe is unnecessary. Here we present taxonomic and nomenclatural proposals that will preserve established research connections and facilitate communication within and between research communities, and at the same time support strong scientific principles and good taxonomic practice.

Effect of Biochar Amendments on Mycorrhizal Associations and Fusarium Crown and Root Rot of Asparagus in Replant Soils

Pyrolyzed biomass waste, commonly called biochar, has attracted interest as a soil amendment. A commercial prototype biochar produced by fast pyrolysis of hardwood dust was examined in soils to determine if it could reduce the damaging effect of allelopathy on arbuscular mycorrhizal (AM) root colonization and on Fusarium crown and root rot of asparagus. In greenhouse studies, biochar added at 1.5 and 3.0% (wt/wt) to asparagus field soil caused proportional increases in root weights and linear reductions in the percentage of root lesions caused by Fusarium oxysporum f. sp. asparagi and F. proliferatum compared with a control. Concomitant with these effects was a 100% increase in root colonization by AM fungi at the 3.0% rate. Addition of aromatic acids (cinnamic, coumaric, and ferulic) that are known allelopathic agents affecting asparagus reduced AM colonization but the deleterious effects were not observed following the application of biochar at the higher rate. When dried, ground, asparagus root and crown tissues infested with Fusarium spp. were added to soilless potting mix at 0, 1, or 5 g/liter of potting mix and then planted with asparagus, there was a decrease in asparagus root weight and increase in disease at 1 g/liter of potting mix but results were inconsistent at the higher residue rate. However, when biochar was added at 35 g/liter of potting mix (roughly 10%, vol/vol), these adverse effects on root weight and disease were equal to the nontreated controls. A small demonstration was conducted in field microplots. Those plots amended with biochar (3.5% [wt/wt] soil) produced asparagus plants with more AM colonization in the first year of growth but, in the subsequent year, biochar-treated plants were reduced in size, possibly due to greater than average precipitation and the ability of biochar to retain moisture that, in turn, may have created conditions conducive to root rot. These studies provide evidence that biochar may be useful in overcoming the deleterious effects of allelopathic residues in replant soils on asparagus.

One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use.

In this letter, we advocate recognizing the genus Fusarium as the sole name for a group that includes virtually all Fusarium species of importance in plant pathology, mycotoxicology, medicine, and basic research. This phylogenetically guided circumscription will free scientists from any obligation to use other genus names, including teleomorphs, for species nested within this clade, and preserve the application of the name Fusarium in the way it has been used for almost a century. Due to recent changes in the International Code of Nomenclature for algae, fungi, and plants, this is an urgent matter that requires community attention. The alternative is to break the longstanding concept of Fusarium into nine or more genera, and remove important taxa such as those in the F. solani species complex from the genus, a move we believe is unnecessary. Here we present taxonomic and nomenclatural proposals that will preserve established research connections and facilitate communication within and between research communities, and at the same time support strong scientific principles and good taxonomic practice.

Effect of Compost Amendment or Straw Mulch on Potato Early Dying Disease

Single potato plants (Solanum tuberosum) cv. Superior were grown in field microplots to evaluate the effects of spent mushroom compost or straw mulch on early dying of potato caused by Verticillium dahliae and/or Pratylenchus penetrans. Prior to planting, soil was fumigated, placed in field microplots, and then infested with pathogens. Area under the senescence progress curve (AUSPC) was greater for plots infested with V. dahliae and/or P. penetrans than for noninfested plots. Plants grown in soil infested with both pathogens developed symptoms earlier than plants grown in soil infested with a single pathogen. Both V. dahliae and P. penetrans reduced yields; the combination of pathogens reduced marketable tuber yields by 22 to 44% (A- and B-sized tubers). Although the total number of tubers of all sizes was not affected by cultural or pathogen treatments, the addition of compost increased marketable tuber weight and decreased AUSPC. Soil amendment with spent mushroom compost may be a means of reducing the effects of potato early dying and increasing tuber yield when one or both pathogens are present.

Integrated management of strawberry pests by rotation and intercropping

Abstract ‘Saia’ oats ( Avena strigosa ) and ‘Triple S’ sorgho-sudangrass ( Sorghum bicolor x S. sudanense ) were investigated as rotation crops and as interplanted companion crops the following year for their individual and combined effects on strawberry root pathogens, weed species composition and density, weevil and white grub densities in soil, rhizosphere microbial populations, nutrient content of crowns, and strawberry yield. Treatments were compared with ‘Garry’ oats ( Avena sativa ) or continuous ‘Honeoye’ strawberries at two sites in Connecticut. Lesion nematode ( Pratylenchus penetrans ) recovery was greater from Garry oats than for strawberry, Saia oats or sorgho-sudangrass. Bait root infection by Rhizoctonia fragariae was highest for strawberry. Weed density was inversely related to rotation crop density. White grub larvae were most common in strawberry. Rotation crop did not affect isolation of Rhizoctonia or Pythium in 1996 or 1997. Weed growth in plots in 1996 was suppressed after sorgho-sudangrass in 1995, but not in 1997. Intercropping was similar to herbicide application, but only when the intercrop was present. Rotation crop did not affect pathogen recovery from roots of 2-year old strawberry crowns. Numbers of European chafer larvae were greatest in Saia oats, which may have been attractive to gravid females. Japanese and Asiatic garden beetle populations were positively correlated with soil organic matter. Rhizosphere populations of fluorescent pseudomonads were unaffected by treatment. Fruit yield (1997) was greatest in plots previously planted to Garry or Saia oats and least after sorgho-sudangrass, possibly due to phytotoxic properties of residues. Production of rotation crops such as sorgho-sudangrass or Saia oats may suppress pathogen densities, weeds, and white grub densities prior to planting strawberries but may also adversely affect strawberry growth and yield.

Influence of Earthworm Activity on Soil Microbes and Soilborne Diseases of Vegetables

Earthworm densities have been regarded as reliable indicators of soil health, but their role in suppression of plant disease has not received much attention. Several greenhouse studies were done to determine if soils infested with soilborne pathogens and augmented with earthworms (Lumbricus terrestris) could reduce disease of susceptible cultivars of asparagus (Asparagus officinalis), eggplant (Solanum melongena), and tomato (Solanum lycopersicum). Soils planted with asparagus were infested with Fusarium oxysporum f. sp. asparagi and F. proliferatum, eggplant with Verticillium dahliae, and tomato with F. oxysporum f. sp. lycopersici Race 1. In each host-disease system, earthworm activity was associated with an increase in plant growth and a decrease in disease. In general, plant weights were increased 60 to 80% and estimates of disease (area under the disease progress curve, percent vascular discoloration, and percent root lesions) were reduced 50 to 70% when soils were augmented with earthworms. Soil dilutions on selective media revealed that densities of fluorescent pseudomonads and filamentous actinomycetes were consistently higher for rhizosphere soils augmented with earthworms. In the studies with Verticillium wilt of eggplant, compared to the controls, the densities of total bacteria and Mn-transforming microbes were reduced in the presence of earthworms while population densities of bacilli and Trichoderma spp. were not affected. Disease suppression may have been mediated through microbiological activity. These studies suggest that strategies to increase earthworm densities in soil should suppress soilborne diseases.

Influence of formononetin and NaCl on mycorrhizal colonization and Fusarium crown and root rot of asparagus

Replanted asparagus fields commonly fail to produce a profitable stand due to alleopathic residues left behind from the previous asparagus crop, elevated densities of pathogenic Fusarium spp., and low densities of vesicular arbuscular mycorrhizae (VAM). Formononetin, a plant isoflavone that stimulates VAM spores to germinate, and sodium chloride (NaCl), a disease-suppressing amendment, were evaluated alone and in combination for their effect on reestablishing asparagus at two locations in abandoned asparagus fields. Greenhouse studies also were conducted with naturally and artificially infested soils. Formononetin was applied as a crown soak or soil drench, and NaCl was applied as a granular treatment. Feeder roots from soil cores sampled from field plots and from greenhouse transplants were assayed for colonization by VAM and for lesions caused by Fusarium oxysporum and F. proliferatum. Formononetin increased the number of VAM vesicles in roots from the field and greenhouse studies and reduced the percent root lesions caused by Fusarium spp. when compared with the nontreated controls. NaCl was more effective than formononetin in reducing the percentage of root lesions in both field and greenhouse experiment when compared with untreated plants but had no effect on VAM colonization. However, there was evidence that NaCl negated the effect of formononentin on VAM colonization. The NaCl treatment increased the May 2001 spear number by 15% and marketable spear weight by 23%. At one site, treatment with formononetin increased mean number of stalks per plant by 29% in 2000 and 14% in 2001. Both formononetin and NaCl improve growth and reduce disease of asparagus in replanted asparagus and may be useful in reestablishing asparagus in abandoned asparagus field.

Multilocus Phylogenetic Diversity of Fusarium avenaceum Pathogenic on Lisianthus

Fusarium avenaceum is a globally distributed fungus commonly isolated from soil and a wide range of plants. Severe outbreaks of crown and stem rot of the flowering ornamental, lisianthus (Eustoma grandiflorum), have been attributed to F. avenaceum. We sequenced portions of the translation elongation factor 1-alpha (tef) and beta-tubulin (benA) protein coding genes as well as partial intergenic spacer (IGS) regions of the nuclear ribosomal genes in 37 Fusarium isolates obtained from lisianthus and other host plants. Isolates that were previously identified morphologically as F. acuminatum were included as an outgroup. Phylogenetic analyses of tef, benA, and IGS sequences showed that F. avenaceum isolates were an exclusive group with strong bootstrap support and no significant incongruence among gene genealogies. Isolates from lisianthus were scattered within this clade and did not form distinct groups based on host species or locality. Pathogenicity tests of F. avenaceum isolates obtained from several other hosts showed an ability to cause disease on lisianthus, suggesting that F. avenaceum may be pathogenic on lisianthus regardless of its phylogenetic origin. These findings have management implications and suggest that any host that supports F. avenaceum may serve as a source of inoculum for lisianthus growers.

Seeds as Vehicles for Pathogen Importation

Since the 1900s, consumer demand for new plant products gave opportunity for many plant pathogens to disseminate to new areas on imported seeds. New markets for plant commodities encouraged plant breeders to begin collecting seed stocks from abroad. The birth of new seed companies extend their markets to new area. These events began the global dissemination of many seedborne pathogens. Many seedborne pathogens gained entry and escaped detection by specific traits that favored their dissemination. Three recent case scenarios are presented that illustrate how plant pathogens that passively employ the seed coats of their host achieved global dissemination and permanence in each patho-system. Evidence is presented to show that asparagus (Asparagus officinalis) seed produced in the US acted as a vehicle for disseminating one vegetatively compatible group (VCG) of a pathogenic fungus on asparagus called Fusarium proliferatum throughout new plantings in Australia. Similarly, public demand for Mediterranean cuisine in the US and abroad during the last 20 years led to an increase in the importation of basil (Ocimum basilicum) seed along with an inconspicuous fungus called Fusarium oxysporum. The fungus caused a destructive disease called Fusarium wilt of basil that appeared in over 25 separate locals spanning three continents. The third example demonstrated how new developments in lupine (Lupinus spp.) cultivars and increased public demand led to the global dispersal of a seedborne pathogen called Colletotrichum gloeosporioides. Each case highlights how these pathogens use seeds, humans, and particular traits to disperse globally in short period of time.