Xiaoning Shen
University of Pennsylvania
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Publication
Featured researches published by Xiaoning Shen.
Physical Review Letters | 2011
Xiaoning Shen; Paulo E. Arratia
The effects of fluid elasticity on the swimming behavior of the nematode Caenorhabditis elegans are experimentally investigated by tracking the nematodes motion and measuring the corresponding velocity fields. We find that fluid elasticity hinders self-propulsion. Compared to Newtonian solutions, fluid elasticity leads to up to 35% slower propulsion. Furthermore, self-propulsion decreases as elastic stresses grow in magnitude in the fluid. This decrease in self-propulsion in viscoelastic fluids is related to the stretching of flexible molecules near hyperbolic points in the flow.
Physics of Fluids | 2010
Josué Sznitman; Xiaoning Shen; Raphael Sznitman; Paulo E. Arratia
The swimming behavior of the nematode Caenorhabditis elegans is investigated in aqueous solutions of increasing viscosity. Detailed flow dynamics associated with the nematode’s swimming motion as well as propulsive force and power are obtained using particle tracking and velocimetry methods. We find that C. elegans delivers propulsive thrusts on the order of a few nanonewtons. Such findings are supported by values obtained using resistive force theory; the ratio of normal to tangential drag coefficients is estimated to be approximately 1.4. Over the range of solutions investigated here, the flow properties remain largely independent of viscosity. Velocity magnitudes of the flow away from the nematode body decay rapidly within less than a body length and collapse onto a single master curve. Overall, our findings support that C. elegans is an attractive living model to study the coupling between small-scale propulsion and low Reynolds number hydrodynamics.
Genetics | 2012
Predrag Krajacic; Xiaoning Shen; Prashant K. Purohit; Paulo E. Arratia; Todd Lamitina
Caenorhabditis elegans locomotion is a stereotyped behavior that is ideal for genetic analysis. We integrated video microscopy, image analysis algorithms, and fluid mechanics principles to describe the C. elegans swim gait. Quantification of body shapes and external hydrodynamics and model-based estimates of biomechanics reveal that mutants affecting similar biological processes exhibit related patterns of biomechanical differences. Therefore, biomechanical profiling could be useful for predicting the function of previously unstudied motility genes.
EPL | 2013
David A. Gagnon; Xiaoning Shen; Paulo E. Arratia
The motility behavior of the nematode Caenorhabditis elegans in polymeric solutions of varying concentrations is systematically investigated in experiments using tracking and velocimetry methods. As the polymer concentration is increased, the solution undergoes a transition from the semi-dilute to the concentrated regime, where these rod-like polymers entangle, align, and form networks. Remarkably, we find an enhancement in the nematodes swimming speed of approximately 65% in concentrated solutions compared to semi-dilute solutions. Using velocimetry methods, we show that the undulatory swimming motion of the nematode induces an anisotropic mechanical response in the fluid. This anisotropy, which arises from the fluid micro-structure, is responsible for the observed increase in swimming speed.
Physics of Fluids | 2014
David A. Gagnon; Nathan C. Keim; Xiaoning Shen; Paulo E. Arratia
In the absence of inertia, a reciprocal swimmer achieves no net motion in a viscous Newtonian fluid. Here, using tracking methods and birefringence imaging, we investigate the ability of a reciprocally actuated particle to translate through a complex fluid that possesses a network. A geometrically polar particle, a rod with a bead on one end, is reciprocally rotated using magnetic fields. The particle is immersed in a wormlike micellar (WLM) solution that is known to be susceptible to the formation of shear bands and other localized structures due to shear-induced remodeling of its microstructure. Results show that the nonlinearities present in this WLM solution break time-reversal symmetry under certain conditions, and enable propulsion of an artificial “swimmer.” We find three regimes dependent on the Deborah number (De): net motion towards the bead-end of the particle at low De, net motion towards the rod-end of the particle at intermediate De, and no appreciable propulsion at high De. At low De, where the particle time scale is longer than the fluid relaxation time, we believe that propulsion is caused by an imbalance in the fluid first normal stress differences between the two ends of the particle (bead and rod). At De ∼ 1, however, we observe the emergence of a region of network anisotropy near the rod using birefringence imaging. This anisotropy suggests alignment of the micellar network, which is “locked in” due to the shorter time scale of the particle relative to the fluid.
Archive | 2010
Josué Sznitman; Xiaoning Shen; Prashant K. Purohit; Raphael Sznitman; Paulo E. Arratia
Undulatory locomotion, as seen in the nematode Caenorhabditis elegans, is a common swimming gait of organisms populating the world of low Reynolds number. While the nematode’s motility is expected to be a strong function of its material properties, measurements remain scarce. Here, we first reveal the robustness of C. elegans’ swimming gait with increasing mechanical load. By coupling kinematic data with a simple model, we measure non-invasively C. elegans’ material properties including Young’s modulus and tissue viscosity. By comparing wild-type nematodes with mutant strains carrying muscular dystrophy, we find that tissue properties are sensitive to changes in muscle functional properties. Altogether, our findings suggest that C. elegans is an attractive model to bridge small-scale motility research with biomechanical knowledge.
Experimental Mechanics | 2010
Josué Sznitman; Xiaoning Shen; Prashant K. Purohit; Paulo E. Arratia
Bulletin of the American Physical Society | 2013
David A. Gagnon; Xiaoning Shen; Paulo E. Arratia
Bulletin of the American Physical Society | 2012
Paulo E. Arratia; Xiaoning Shen; Nathan C. Keim
Bulletin of the American Physical Society | 2011
Josué Sznitman; Xiaoning Shen; Paulo E. Arratia