Network


Latest external collaboration on country level. Dive into details by clicking on the dots.

Hotspot


Dive into the research topics where Yuko Shimada is active.

Publication


Featured researches published by Yuko Shimada.


Gut | 2004

Effect of a corticotropin releasing hormone receptor antagonist on colonic sensory and motor function in patients with irritable bowel syndrome

Yasuhiro Sagami; Yuko Shimada; Jun Tayama; Taisuke Nomura; Manabu Satake; Yuka Endo; Tomotaka Shoji; K Karahashi; Michio Hongo; Shin Fukudo

Background and aims: Corticotropin releasing hormone (CRH) is a major mediator of the stress response in the brain-gut axis. Irritable bowel syndrome (IBS) is presumed to be a disorder of the brain-gut link associated with an exaggerated response to stress. We hypothesised that peripheral administration of α-helical CRH (αhCRH), a non-selective CRH receptor antagonist, would improve gastrointestinal motility, visceral perception, and negative mood in response to gut stimulation in IBS patients. Methods: Ten normal healthy subjects and 10 IBS patients, diagnosed according to the Rome II criteria, were studied. The tone of the descending colon and intraluminal pressure of the sigmoid colon were measured at baseline, during rectal electrical stimulation (ES), and at recovery after administration of saline. Visceral perception after colonic distension or rectal ES was evaluated as threshold values on an ordinate scale. The same measurements were repeated after administration of αhCRH (10 μg/kg). Results: ES induced significantly higher motility indices of the colon in IBS patients compared with controls. This response was significantly suppressed in IBS patients but not in controls after administration of αhCRH. Administration of αhCRH induced a significant increase in the barostat bag volume of controls but not in that of IBS patients. αhCRH significantly reduced the ordinate scale of abdominal pain and anxiety evoked by ES in IBS patients. Plasma adrenocorticotropic hormone and serum cortisol levels were generally not suppressed by αhCRH. Conclusion: Peripheral administration of αhCRH improves gastrointestinal motility, visceral perception, and negative mood in response to gut stimulation, without affecting the hypothalamo-pituitary-adrenal axis in IBS patients.


Applied and Environmental Microbiology | 2009

Microbial Production of Glyceric Acid, an Organic Acid That Can Be Mass Produced from Glycerol

Hiroshi Habe; Yuko Shimada; Toshiharu Yakushi; Hiromi Hattori; Yoshitaka Ano; Tokuma Fukuoka; Dai Kitamoto; Masayuki Itagaki; Kunihiro Watanabe; Hiroshi Yanagishita; Kazunobu Matsushita; Keiji Sakaki

ABSTRACT Glyceric acid (GA), an unfamiliar biotechnological product, is currently produced as a small by-product of dihydroxyacetone production from glycerol by Gluconobacter oxydans. We developed a method for the efficient biotechnological production of GA as a target compound for new surplus glycerol applications in the biodiesel and oleochemical industries. We investigated the ability of 162 acetic acid bacterial strains to produce GA from glycerol and found that the patterns of productivity and enantiomeric GA compositions obtained from several strains differed significantly. The growth parameters of two different strain types, Gluconobacter frateurii NBRC103465 and Acetobacter tropicalis NBRC16470, were optimized using a jar fermentor. G. frateurii accumulated 136.5 g/liter of GA with a 72% d-GA enantiomeric excess (ee) in the culture broth, whereas A. tropicalis produced 101.8 g/liter of d-GA with a 99% ee. The 136.5 g/liter of glycerate in the culture broth was concentrated to 236.5 g/liter by desalting electrodialysis during the 140-min operating time, and then, from 50 ml of the concentrated solution, 9.35 g of GA calcium salt was obtained by crystallization. Gene disruption analysis using G. oxydans IFO12528 revealed that the membrane-bound alcohol dehydrogenase (mADH)-encoding gene (adhA) is required for GA production, and purified mADH from G. oxydans IFO12528 catalyzed the oxidation of glycerol. These results strongly suggest that mADH is involved in GA production by acetic acid bacteria. We propose that GA is potentially mass producible from glycerol feedstock by a biotechnological process.


Neurogastroenterology and Motility | 2007

Effect of alpha-helical CRH on quantitative electroencephalogram in patients with irritable bowel syndrome

J. Tayama; Yasuhiro Sagami; Yuko Shimada; Michio Hongo; Shin Fukudo

Abstract  Patients with irritable bowel syndrome (IBS) may have a higher tone of corticotropin‐releasing hormone (CRH) in the brain. We tested our hypothesis that peripheral administration of CRH antagonist, α‐helical CRH9−41 (αhCRH), improves decreased alpha power spectra and increased beta power spectra of electroencephalogram (EEG) in IBS patients. A barostat bag was inserted to the descending colon of 10 normal controls and 10 IBS patients. The EEG power spectra and topography were measured during baseline period and colonic distention period with the administration of saline followed by the administration of 10 μg kg−1 of αhCRH. IBS patients showed a significantly lower alpha power percentage and a higher beta power percentage than normal controls during baseline. Colonic distention induced a decrease in the alpha power percentage and an increase in the beta power percentage in both groups without difference between groups. After the administration of αhCRH, changes in the EEG power spectra in response to colonic distention were blunted and the differences in the EEG power spectra between IBS patients and controls vanished. Peripheral administration of αhCRH almost normalized EEG activities in IBS patients. Our data strongly suggest that CRH plays an important role in IBS.


Bioscience, Biotechnology, and Biochemistry | 2009

Production of Glyceric Acid by Gluconobacter sp. NBRC3259 Using Raw Glycerol

Hiroshi Habe; Yuko Shimada; Tokuma Fukuoka; Dai Kitamoto; Masayuki Itagaki; Kunihiro Watanabe; Hiroshi Yanagishita; Keiji Sakaki

Gluconobacter sp. NBRC3259 converted glycerol to glyceric acid (GA). The enantiomeric composition of the GA produced was a mixture of DL-forms with a 77% enantiomeric excess of D-GA. After culture conditions, such as initial glycerol concentration, types and amounts of nitrogen sources, and initial pH, were optimized, Gluconobacter sp. NBRC3259 produced 54.7 g/l of GA as well as 33.7 g/l of dihydroxyacetone (DHA) from 167 g/l of glycerol during 4 d of incubation in a jar fermentor with pH control. GA production from raw glycerol samples, the main by-product of the transesterification process in the biodiesel production and oleochemical industries, was also evaluated after proper pretreatment of the samples. Using a raw glycerol sample with activated charcoal pretreatment, 45.9 g/l of GA and 28.2 g/l of DHA were produced from 174 g/l of glycerol.


Applied and Environmental Microbiology | 2014

Effects of pH and Lactate on Hydrogen Sulfide Production by Oral Veillonella spp.

Jumpei Washio; Yuko Shimada; Masakazu Yamada; Ryouichi Sakamaki; Nobuhiro Takahashi

ABSTRACT Indigenous oral bacteria in the tongue coating such as Veillonella have been identified as the main producers of hydrogen sulfide (H2S), one of the major components of oral malodor. However, there is little information on the physiological properties of H2S production by oral Veillonella such as metabolic activity and oral environmental factors which may affect H2S production. Thus, in the present study, the H2S-producing activity of growing cells, resting cells, and cell extracts of oral Veillonella species and the effects of oral environmental factors, including pH and lactate, were investigated. Type strains of Veillonella atypica, Veillonella dispar, and Veillonella parvula were used. These Veillonella species produced H2S during growth in the presence of l-cysteine. Resting cells of these bacteria produced H2S from l-cysteine, and the cell extracts showed enzymatic activity to convert l-cysteine to H2S. H2S production by resting cells was higher at pH 6 to 7 and lower at pH 5. The presence of lactate markedly increased H2S production by resting cells (4.5- to 23.7-fold), while lactate had no effect on enzymatic activity in cell extracts. In addition to H2S, ammonia was produced in cell extracts of all the strains, indicating that H2S was produced by the catalysis of cystathionine γ-lyase (EC 4.4.1.1). Serine was also produced in cell extracts of V. atypica and V. parvula, suggesting the involvement of cystathionine β-synthase lyase (EC 4.2.1.22) in these strains. This study indicates that Veillonella produce H2S from l-cysteine and that their H2S production can be regulated by oral environmental factors, namely, pH and lactate.


Bioscience, Biotechnology, and Biochemistry | 2010

Use of a Gluconobacter frateurii Mutant to Prevent Dihydroxyacetone Accumulation during Glyceric Acid Production from Glycerol

Hiroshi Habe; Yuko Shimada; Tokuma Fukuoka; Dai Kitamoto; Masayuki Itagaki; Kunihiro Watanabe; Hiroshi Yanagishita; Toshiharu Yakushi; Kazunobu Matsushita; Keiji Sakaki

To prevent dihydroxyacetone (DHA) by-production during glyceric acid (GA) production from glycerol using Gluconobacter frateurii, we used a G. frateurii THD32 mutant, ΔsldA, in which the glycerol dehydrogenase subunit-encoding gene (sldA) was disrupted, but ΔsldA grew much more slowly than the wild type, growth starting after a lag of 3 d under the same culture conditions. The addition of 1% w/v D-sorbitol to the medium improved both the growth and the GA productivity of the mutant, and ΔsldA produced 89.1 g/l GA during 4 d of incubation without DHA accumulation.


Journal of Bioscience and Bioengineering | 2010

Two-stage electrodialytic concentration of glyceric acid from fermentation broth

Hiroshi Habe; Yuko Shimada; Tokuma Fukuoka; Dai Kitamoto; Masayuki Itagaki; Kunihiko Watanabe; Hiroshi Yanagishita; Keiji Sakaki

The aim of this research was the application of a two-stage electrodialysis (ED) method for glyceric acid (GA) recovery from fermentation broth. First, by desalting ED, glycerate solutions (counterpart is Na+) were concentrated using ion-exchange membranes, and the glycerate recovery and energy consumption became more efficient with increasing the initial glycerate concentration (30 to 130 g/l). Second, by water-splitting ED, the concentrated glycerate was electroconverted to GA using bipolar membranes. Using a culture broth of Acetobacter tropicalis containing 68.6 g/l of D-glycerate, a final D-GA concentration of 116 g/l was obtained following the two-stage ED process. The total energy consumption for the D-glycerate concentration and its electroconversion to D-GA was approximately 0.92 kWh per 1 kg of D-GA.


Archive | 2010

Hydrogen-sulfide production from various substrates by oral Veillonella and effects of lactate on the production

Jumpei Washio; Yoko Sakuma; Yuko Shimada; Nobuhiro Takahashi

Oral Veillonella is one of the dominant bacteria in the tongue coating that produces hydrogen sulfide (H2S) known as one of the cause of oral malodor. This study aimed to examine various cysteine-containing substrates on the H2S production by Veillonella, and the effects of oral environmental factors, such as pH and lactate, on the production. Three Veillonella species were grown and the cell suspensions were incubated with cysteine, cysteinyl-glycine, glutathione, cystine, and tryptone at pH 7 in the presence or absence of lactate. The amounts of H2S produced were measured by methylene blue method. The H2S production was the highest from cysteine and cysteinyl-glycine. In addition, lactate increased the H2S production. These results suggested that Veillonella can produce H2S from cysteine-containing substrates available in the oral cavity, and that the production is regulated by oral environmental factors such as lactate.


Journal of Psychosomatic Research | 2006

Gender difference in association between polymorphism of serotonin transporter gene regulatory region and anxiety

Tomoko Mizuno; Masashi Aoki; Yuko Shimada; Midori Inoue; Kumi Nakaya; Toshiaki Takahashi; Yasuto Itoyama; Motoyori Kanazawa; Atsushi Utsumi; Yuka Endo; Taisuke Nomura; Masahiro Hiratsuka; Michinao Mizugaki; Junichi Goto; Michio Hongo; Shin Fukudo


Archive | 2004

Effect of Corticotropin-Releasing Hormone Receptor Antagonist on EEG Power Spectra in Patients with Irritable Bowel Syndrome(Topic Forum — "Corticotropin Releasing Factor: Receptors, Cell Signaling and Modulation of Visceral Sensitivity") Impact of Learned Illness Behavior on Health Care Costs(AGA Research Forum - "Functional GI Disorders: Psychosocial")

Shin Fukudo; Jun Tayama; Yasuhiro Sagami; Yuko Shimada; Michiko Kano; Motoyori Kanazawa; Michio Hongo; Rona Levy; William E. Whitehead; Lynn Walker; Andrew D. Feld; Michael Von Korff; Dennis L. Christie; Michelle D. Garner; Catherine A. White; Yehuda Ringel; Douglas A. Drossman; Tara Dyson; Nicholas J. Shaheen; Carolyn B. Morris; Yuming Yu; Shrikant I. Bangdiwala; Christine B. Dalton; Nicholas E. Diamant; Albena Halpert; Brenda B. Toner; Yuming Hu; Jane Leserman

Collaboration


Dive into the Yuko Shimada's collaboration.

Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar

Dai Kitamoto

National Institute of Advanced Industrial Science and Technology

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar

Hiroshi Yanagishita

National Institute of Advanced Industrial Science and Technology

View shared research outputs
Top Co-Authors

Avatar

Keiji Sakaki

National Institute of Advanced Industrial Science and Technology

View shared research outputs
Top Co-Authors

Avatar

Masayuki Itagaki

Tokyo University of Science

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar

Tokuma Fukuoka

National Institute of Advanced Industrial Science and Technology

View shared research outputs
Top Co-Authors

Avatar
Researchain Logo
Decentralizing Knowledge