Zhenyi An
University of Texas Southwestern Medical Center
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Publication
Featured researches published by Zhenyi An.
Nature | 2012
Congcong He; Michael C. Bassik; Viviana Moresi; Kai Sun; Yongjie Wei; Zhongju Zou; Zhenyi An; Joy Loh; Jill K. Fisher; Qihua Sun; Stanley J. Korsmeyer; Milton Packer; Herman I. May; Joseph A. Hill; Herbert W. Virgin; Christopher Gilpin; Guanghua Xiao; Rhonda Bassel-Duby; Philipp E. Scherer; Beth Levine
Exercise has beneficial effects on human health, including protection against metabolic disorders such as diabetes. However, the cellular mechanisms underlying these effects are incompletely understood. The lysosomal degradation pathway, autophagy, is an intracellular recycling system that functions during basal conditions in organelle and protein quality control. During stress, increased levels of autophagy permit cells to adapt to changing nutritional and energy demands through protein catabolism. Moreover, in animal models, autophagy protects against diseases such as cancer, neurodegenerative disorders, infections, inflammatory diseases, ageing and insulin resistance. Here we show that acute exercise induces autophagy in skeletal and cardiac muscle of fed mice. To investigate the role of exercise-mediated autophagy in vivo, we generated mutant mice that show normal levels of basal autophagy but are deficient in stimulus (exercise- or starvation)-induced autophagy. These mice (termed BCL2 AAA mice) contain knock-in mutations in BCL2 phosphorylation sites (Thr69Ala, Ser70Ala and Ser84Ala) that prevent stimulus-induced disruption of the BCL2–beclin-1 complex and autophagy activation. BCL2 AAA mice show decreased endurance and altered glucose metabolism during acute exercise, as well as impaired chronic exercise-mediated protection against high-fat-diet-induced glucose intolerance. Thus, exercise induces autophagy, BCL2 is a crucial regulator of exercise- (and starvation)-induced autophagy in vivo, and autophagy induction may contribute to the beneficial metabolic effects of exercise.
Science | 2012
Richard C. Wang; Yongjie Wei; Zhenyi An; Zhongju Zou; Guanghua Xiao; Govind Bhagat; Michael A. White; Julia Reichelt; Beth Levine
Getting Autophagy to Akt The protein kinase Akt is often activated in human cancers and is thought to promote tumor formation. One way in which it may do so is to inhibit autophagy (a process by which the cell digests its own proteins or organelles, especially damaged ones). Wang et al. (p. 956, published online 25 October; see the Perspective by Koren and Kimchi) provide a direct molecular mechanism by which Akt regulates autophagy. Beclin, a component of the autophagy machinery, appears to be a direct target of phosphorylation by Akt. Such phosphorylation enhanced interaction of Beclin with intermediate filaments of the cyto skeleton and inhibited autophagy. Expression of a modified Beclin 1 molecule that could not be phosphorylated by Akt inhibited Akt-induced transformation of cells in culture and tumor formation in a mouse model. A direct link between a cancer-promoting protein kinase and the control of autophagy is presented. Aberrant signaling through the class I phosphatidylinositol 3-kinase (PI3K)–Akt axis is frequent in human cancer. Here, we show that Beclin 1, an essential autophagy and tumor suppressor protein, is a target of the protein kinase Akt. Expression of a Beclin 1 mutant resistant to Akt-mediated phosphorylation increased autophagy, reduced anchorage-independent growth, and inhibited Akt-driven tumorigenesis. Akt-mediated phosphorylation of Beclin 1 enhanced its interactions with 14-3-3 and vimentin intermediate filament proteins, and vimentin depletion increased autophagy and inhibited Akt-driven transformation. Thus, Akt-mediated phosphorylation of Beclin 1 functions in autophagy inhibition, oncogenesis, and the formation of an autophagy-inhibitory Beclin 1/14-3-3/vimentin intermediate filament complex. These findings have broad implications for understanding the role of Akt signaling and intermediate filament proteins in autophagy and cancer.
eLife | 2015
Yongjie Wei; Zhenyi An; Zhongju Zou; Rhea Sumpter; Minfei Su; Xiao Zang; Sangita C. Sinha; Matthias Gaestel; Beth Levine
Autophagy is a fundamental adaptive response to amino acid starvation orchestrated by conserved gene products, the autophagy (ATG) proteins. However, the cellular cues that activate the function of ATG proteins during amino acid starvation are incompletely understood. Here we show that two related stress-responsive kinases, members of the p38 mitogen-activated protein kinase (MAPK) signaling pathway MAPKAPK2 (MK2) and MAPKAPK3 (MK3), positively regulate starvation-induced autophagy by phosphorylating an essential ATG protein, Beclin 1, at serine 90, and that this phosphorylation site is essential for the tumor suppressor function of Beclin 1. Moreover, MK2/MK3-dependent Beclin 1 phosphorylation (and starvation-induced autophagy) is blocked in vitro and in vivo by BCL2, a negative regulator of Beclin 1. Together, these findings reveal MK2/MK3 as crucial stress-responsive kinases that promote autophagy through Beclin 1 S90 phosphorylation, and identify the blockade of MK2/3-dependent Beclin 1 S90 phosphorylation as a mechanism by which BCL2 inhibits the autophagy function of Beclin 1. DOI: http://dx.doi.org/10.7554/eLife.05289.001
Autophagy | 2014
Zhenyi An; Amina Tassa; Collin Thomas; Rui Zhong; Guanghua Xiao; Rati Fotedar; Benjamin P. Tu; Daniel J. Klionsky; Beth Levine
In response to starvation, cells undergo increased levels of autophagy and cell cycle arrest but the role of autophagy in starvation-induced cell cycle arrest is not fully understood. Here we show that autophagy genes regulate cell cycle arrest in the budding yeast Saccharomyces cerevisiae during nitrogen starvation. While exponentially growing wild-type yeasts preferentially arrest in G1/G0 in response to starvation, yeasts carrying null mutations in autophagy genes show a significantly higher percentage of cells in G2/M. In these autophagy-deficient yeast strains, starvation elicits physiological properties associated with quiescence, such as Snf1 activation, glycogen and trehalose accumulation as well as heat-shock resistance. However, while nutrient-starved wild-type yeasts finish the G2/M transition and arrest in G1/G0, autophagy-deficient yeasts arrest in telophase. Our results suggest that autophagy is crucial for mitotic exit during starvation and appropriate entry into a G1/G0 quiescent state.
PLOS ONE | 2009
Shengjun Wang; Fengxue Xin; Xiaoyue Liu; Yuxiao Wang; Zhenyi An; Qingsheng Qi; Peng George Wang
Peptide:N-glycanase catalyzes the detachment of N-linked glycan chains from glycopeptides or glycoproteins by hydrolyzing the β-aspartylglucosaminyl bond. Peptide:N-glycanase in yeast binds to Rad23p through its N-terminus. In this study, the complex formed between Peptide:N-glycanase and Rad23p was found to exhibit enhanced deglycosylation activity, which suggests an important role for this enzyme in the misfolded glycoprotein degradation pathway in vivo. To investigate the role of this enzyme in this pathway, we made stepwise deletions of the N-terminal helices of peptide:N-glycanase. Enzymatic analysis of the deletion mutants showed that deletion of the N-terminal H1 helix (Png1p-ΔH1) enhanced the deglycosylation activity of N-glycanase towards denatured glycoproteins. In addition, this mutant exhibited high deglycosylation activity towards native glycoproteins. Dynamic simulations of the wild type and N-terminal H1 deletion mutant implied that Png1p-ΔH1 is more flexible than wild type Png1p. The efficient deglycosylation of Png1p-ΔH1 towards native and non-native glycoproteins offers a potential biotechnological application.
Molecular Cancer Research | 2016
Daniela S. Gerhard; Paul A. Clemons; Alykhan F. Shamji; Cindy Hon; Bridget K. Wagner; Stuart L. Schreiber; Alexander Krasnitz; Raffaella Sordella; Chris Sander; Scott W. Lowe; Scott Powers; Kenneth Smith; Mahalaxmi Aburi; Antonio Iavarone; Anna Lasorella; Jose M. Silva; Brent R. Stockwell; Jesse S. Boehm; Francisca Vazquez; Barbara A. Weir; William C. Hahn; Fadlo R. Khuri; Carlos S. Moreno; Margaret A. Johns; Haian Fu; Olga Nikolova; Eduardo Mendez; Vijayakrishna K. Gadi; Adam A. Margolin; Carla Grandori
The Cancer Target Discovery and Development (CTD2) Network was established to accelerate the transformation of “Big Data” into novel pharmacologic targets, lead compounds, and biomarkers for rapid translation into improved patient outcomes. It rapidly became clear in this collaborative network that a key central issue was to define what constitutes sufficient computational or experimental evidence to support a biologically or clinically relevant finding. This article represents a first attempt to delineate the challenges of supporting and confirming discoveries arising from the systematic analysis of large-scale data resources in a collaborative work environment and to provide a framework that would begin a community discussion to resolve these challenges. The Network implemented a multi-tier framework designed to substantiate the biological and biomedical relevance as well as the reproducibility of data and insights resulting from its collaborative activities. The same approach can be used by the broad scientific community to drive development of novel therapeutic and biomarker strategies for cancer. Mol Cancer Res; 14(8); 675–82. ©2016 AACR.
Oncogene | 2018
Zhenyi An; Ozlem Aksoy; Tina Zheng; Qi-Wen Fan; William A. Weiss
Amplification of epidermal growth factor receptor (EGFR) and its active mutant EGFRvIII occurs frequently in glioblastoma (GBM). While EGFR and EGFRvIII play critical roles in pathogenesis, targeted therapy with EGFR-tyrosine kinase inhibitors (TKIs) or antibodies has only shown limited efficacy in patients. Here we discuss signaling pathways mediated by EGFR/EGFRvIII, current therapeutics, and novel strategies to target EGFR/EGFRvIII-amplified GBM.
Nature | 2013
Congcong He; Michael C. Bassik; Viviana Moresi; Kai Sun; Yongjie Wei; Zhongju Zou; Zhenyi An; Joy Loh; Jill K. Fisher; Qihua Sun; Stanley J. Korsmeyer; Milton Packer; Herman I. May; Joseph A. Hill; Herbert W. Virgin; Christopher Gilpin; Guanghua Xiao; Rhonda Bassel-Duby; Philipp E. Scherer; Beth Levine
This corrects the article DOI: 10.1038/nature10758
Nature | 2013
Congcong He; Michael C. Bassik; Viviana Moresi; Kai Sun; Yongjie Wei; Zhongju Zou; Zhenyi An; Joy Loh; Jill K. Fisher; Qihua Sun; Stanley J. Korsmeyer; Milton Packer; Herman I. May; Joseph A. Hill; Herbert W. Virgin; Christopher Gilpin; Guanghua Xiao; Rhonda Bassel-Duby; Philipp E. Scherer; Beth Levine
This corrects the article DOI: 10.1038/nature10758
Nature | 2013
Congcong He; Michael C. Bassik; Viviana Moresi; Kai Sun; Yongjie Wei; Zhongju Zou; Zhenyi An; Joy Loh; Jill K. Fisher; Qihua Sun; Stanley J. Korsmeyer; Milton Packer; Herman I. May; Joseph A. Hill; Herbert W. Virgin; Christopher Gilpin; Guanghua Xiao; Rhonda Bassel-Duby; Philipp E. Scherer; Beth Levine
This corrects the article DOI: 10.1038/nature10758