Zlatko Liber

Phylogeny and Biogeography of Isophyllous Species of Campanula (Campanulaceae) in the Mediterranean Area

Abstract Sequence data from the nuclear internal transcribed spacer (ITS) were used to infer phylogenetic relationships within a morphologically, karyologically, and geographically well-defined group of species of Campanula (Campanulaceae), the Isophylla group. Although belonging to the same clade within the highly paraphyletic Campanula, the Rapunculus clade, members of the Isophylla group do not form a monophyletic group but fall into three separate clades: (i) C. elatines and C. elatinoides in the Alps; (ii) C. fragilis s.l. and C. isophylla with an amphi-Tyrrhenian distribution; and (iii) the garganica clade with an amphi-Adriatic distribution, comprised of C. fenestrellata s.l., C. garganica s.l., C. portenschlagiana, C. poscharskyana, and C. reatina. Taxa currently classified as subspecies of C. garganica (garganica, cephallenica, acarnanica) and C. fenestrellata subsp. debarensis are suggested to be best considered separate species. The molecular dating analysis, although hampered by the lack of fossil evidence, provides age estimates that are consistent with the hypothesis that the diversification within the garganica clade was contemporaneous with the climatic oscillations and corresponding sea-level changes during the late Pliocene and Pleistocene. Dispersal-vicariance analysis suggests that the garganica clade originated east of the Adriatic Sea, from where it reached the Apennine Peninsula.

Molecular and chemical characterization of the most widespread Ocimum species

DNA fingerprinting (AFLP) and chemical analyses of essential oils were utilized to define the extent of variation existing in the genus Ocimum. Research was carried out on 22 Ocimum accessions representing seven species. Concerning the essential oil composition of all investigated accessions, 115 compounds were identified. UPGMA cluster analysis, based on Euclidian distances of essential oil constituents between all pairs of accessions, showed four well-supported clusters (O. tenuiflorum, O. basilicum/O. africanum, O. basilicum, and O. americanum/O. africanum). Relating to the essential oil composition of all of the investigated accessions, 17 compounds were identified as the main ones, and according to them 13 chemotypes were determined. AFLP relationships were determined by neighbor-joining (NJ) cluster analysis based on Dice’s distance matrix and by maximum parsimony (MP) analysis. O. basilicum, O. americanum/O. africanum, O. tenuiflorum, and O. gratissimum represented four clusters supported with high bootstrap values. A neighbor-net diagram allowed the visualization of apparently conflicting data by revealing relationships between genotypes and chemotypes. Concerning the O. africanum species, two distinct chemotypes, geranial/neral (accession 11) and estragol (accession 10), have been established, while all the studied O. americanum accessions belong to the geranial/neral chemotype. This could be additional evidence that O. americanum is one of the parents of O. africanum. Furthermore, the fact that the O. africanum accession (10) as well as O. basilicum ‘Purpurascens’ and O. basilicum ‘Erevanskii’ accessions belong to the estragol chemotype supports the theory that O. africanum is one of the parents of these two O. basilicum accessions.

Molecular phylogeny of the Campanula pyramidalis species complex (Campanulaceae) inferred from chloroplast and nuclear non-coding sequences and its taxonomic implications

The Campanula pyramidalis complex is a group of closely related taxa with a distribution across the Balkans, from the Gulf of Trieste in the north to the Peloponnese Peninsula in the south, with small disjunct parts of the range in the south Apennines. Although 21 taxa were described within this complex, only three, C. pyramidalis, C. versicolor, and C. secundiflora, have been generally accepted in recent synoptical taxonomic treatments. Our molecular phylogenetic analyses based on sequences of three non-coding chloroplast regions (psbA-trnH, psbZ-trnfM, trnG-trnS) as well as of nuclear ribosomal internal transcribed spacers (nrITS), lend strong support to the recognition of several lineages which only partially correspond to generally accepted taxonomic concepts. Molecular data presented in this study showed that C. pyramidalis is a polyphyletic assemblage that segregates into three distinct lineages, one of which is described here as a new species, C. austroadriatica sp. nov. The lectotype of C. pyramidalis, redefined in a strict sense, is designated. Neither C. versicolor nor C. secundiflora were found to be strictly monophyletic, but their monophyly could not be rejected. Morphological and biogeographical implications are discussed.

Molecular phylogeny and systematics of the Lilium carniolicum group (Liliaceae) based on nuclear ITS sequences

The Lilium carniolicum group consists of several taxonomically dubious taxa endemic to the European flora. Internal transcribed spacer (ITS) sequences of nuclear ribosomal DNA (nrDNA) were used to clarify both the delineation of, and relationships among, taxa in the group as well as to provide insight on the phylogenetic position of the group within the genus. Maximum parsimony, maximum likelihood and Bayesian analyses were in general agreement, with all taxa in the group being very closely related, and the entire group being monophyletic. L. pyrenaicum and L. pomponium are placed at the basal position in the group, while L. chalcedonicum is shown to be more closely related to L. carniolicum than previously thought. Our analyses suggested that L. albanicum and L. jankae are distinct from L. carniolicum, while no evidence was found to support the same separation for L. bosniacum.

Phylogenetic relationships in Brassicaceae tribe Alysseae inferred from nuclear ribosomal and chloroplast DNA sequence data.

Numerous molecular systematic studies within Brassicaceae have resulted in a strongly improved classification of the family, as morphologically defined units at and above the generic level were often found to poorly reflect phylogenetic relationships. Here, we focus on tribe Alysseae, which despite its size (accounting for about 7% of all species) has only received limited coverage in previous phylogenetic studies. Specifically, we want to test phylogenetic hypotheses implied by current tribal and generic circumscriptions and to put diversification within tribe Alysseae into a temporal context. To this end, sequence data from the nrDNA ITS and two plastid regions (ndhF gene, trnL-F intergenic spacer) were obtained for 176 accessions, representing 16 out of 17 currently recognized genera of the tribe, and were phylogenetically analysed, among others, using a relaxed molecular clock. Due to large discrepancies with respect to published ages of Brassicaceae, age estimates concerning Alysseae are, however, burdened with considerable uncertainty. The tribe is monophyletic and contains four strongly supported major clades and Alyssum homalocarpum, whose relationships among each other remain uncertain due to incongruences between nuclear and plastid DNA markers. The largest genus of the tribe, Alyssum, is not monophyletic and contains, apart from A. homalocarpum, two distinct lineages, corresponding to sections Alyssum, Psilonema, Gamosepalum and to sections Odontarrhena and Meniocus, respectively. Clypeola, whose monophyly is supported only by the plastid data, is very closely related to and possibly nested within the second Alyssum lineage. Species of the genus Fibigia intermingle with those of Alyssoides, Clastopus, Degenia, and Physoptychis, rendering Fibigia polyphyletic. The monotypic genera Leptoplax and Physocardamum are embedded in Bornmuellera.

Plant species diversity of Adriatic islands: An introductory survey

Abstract The European Mediterranean region is one of the worlds major centres of biodiversity. Research on plant species diversity in this region has neglected the area along the eastern part of the Adriatic basin in comparison to the other Mediterranean areas. The main aim of this study was to focus on this neglected area, by supplying data which is at present lacking in order to discuss the species-area relationship (SAR), floristic richness and endemism of the Adriatic islands and coast. Floristic data for 106 Croatian islands collected by different authors were integrated, systematised and presented in a form usable by other researchers worldwide. The Power (Arrhenius) function was used for modelling (by non-linear regression) the SAR. Residuals around the regression curve (as indicators of floristic diversity without the influence of island area) were calculated for each island. The proportion of endemics in the total island flora varies from 0% up to 28.6%, and 17.5% for narrow endemics. Floristic richness of the broader region was estimated (on the basis of SAR extrapolation) on 1807 species for all Croatian islands, and on 2797 species for the entire Mediterranean area in Croatia.

Development of new microsatellite markers for Salvia officinalis L. and its potential use in conservation-genetic studies of narrow endemic Salvia brachyodon Vandas.

Nine new microsatellite markers (SSR) were isolated from Salvia officinalis L. A total of 125 alleles, with 8 to 21 alleles per locus, were detected in a natural population from the east Adriatic coast. The observed heterozygosity, expected heterozygosity, and polymorphic information content ranged from 0.46 to 0.83, 0.73 to 0.93 and 0.70 to 0.92, respectively. New microsatellite markers, as well as previously published markers, were tested for cross-amplification in Salvia brachyodon Vandas, a narrow endemic species known to be present in only two localities on the Balkan Peninsula. Out of 30 microsatellite markers tested on the natural S. brachyodon population, 15 were successfully amplified. To obtain evidence of recent bottleneck events in the populations of both species, observed genetic diversity (HE) was compared to the expected genetic diversity at mutation-drift equilibrium (HEQ) and calculated from the observed number of alleles using a two-phased mutation model (TPM). Recent bottleneck events were detected only in the S. brachyodon population. This result suggests the need to reconsider the current threat category of this endemic species.

Efficiency of morphological trait descriptors in discrimination of Ocimum basilicum L. accessions

Abstract Most commercial basil cultivars belong to the species Ocimum basilicum L. Moreover, within O. basilicum species, there are five main botanical varieties (var. basilicum L., var. difforme Benth., var. minimum L., var. purpurascens Benth. and var. thyrsiflorum /L./ Benth.) that are mainly found on the market. High levels of both morphological and chemical variability exist within the species due to the intraspecific hybridization and long-term uses throughout the world. The aim of this work was to study the resolving power of morphological traits for reliable identification of basil accessions. Phenotypic dissimilarities between pairs of accessions were calculated, and the unweighted pair-group method dendrogram was constructed. Six clearly defined clusters have been detected, giving a good representation of traditional taxonomic relationships. To compare the efficiency of the morphological traits in accession identification, confusion probability and discriminating power of each trait were calculated. Our results show that with a careful analysis and stringent selection of traits, morphological markers provide an inexpensive and reliable method for routine screening of a large number of accessions, in order to monitor and manage germplasm collections.

Chemical characterization and genetic relationships among Ocimum basilicum L. cultivars.

Twenty‐seven Ocimum basilicum cultivars were subjected to a chemical characterization of essential oil components by gas chromatography/mass spectrometry (GC/MS) and a genetic characterization using the amplified fragment‐length polymorphism (AFLP) technique. Since the same 27 accessions had previously been classified into six morphotypes, these analyses allowed us to make detailed comparisons of chemistry, genetics, and morphology. The chemical composition and morphology of the studied cultivars appeared to have a strong genetic component. The AFLP analysis revealed a distinction between the green and purple morphotypes. The green morphotypes predominantly utilized the terpene biosynthetic pathway, while most purple morphotypes primarily utilized the phenylpropene biosynthetic pathway. The GC/MS analysis led to identification of 87 volatiles. Among the 27 cultivars, five chemotypes were identified. A detailed characterization of the essential oil constituents indicated the existence of both specific combinations of compounds and ‘private’ compounds with the potential to be used in many aspects of human life. The established relationship between a genetic profile, chemical composition, and morphology represents an important step in future breeding programs and in the cultivation of this species.

New microsatellite markers for Salvia officinalis (Lamiaceae) and cross-amplification in closely related species

PREMISE OF THE STUDY Microsatellite primers were identified to study the genetic diversity, population genetic structure, and relationships of common sage and closely related species. METHODS AND RESULTS Nine novel polymorphic trinucleotide microsatellite loci were identified for Salvia officinalis. A total of 127 alleles were observed. The observed and expected heterozygosity values ranged from 0.375 to 0.880 and from 0.624 to 0.931, respectively. Nine new and 11 previously published microsatellite primers were tested for cross-amplification. The species with the most successful cross-amplification was S. fruticosa. CONCLUSIONS The nine new microsatellite markers will be useful in genetic studies of wild and cultivated populations of common sage and are potentially useful in genetic studies of closely related species.