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Dive into the research topics where Abir L. Banerjee is active.

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Featured researches published by Abir L. Banerjee.


The Journal of Physiology | 2005

5‐Hydroxydecanoate is metabolised in mitochondria and creates a rate‐limiting bottleneck for β‐oxidation of fatty acids

Peter J. Hanley; Stefan Dröse; Ulrich Brandt; Rachel A. Lareau; Abir L. Banerjee; D. K. Srivastava; Leonard J. Banaszak; Joseph J. Barycki; Paul P. Van Veldhoven; Jtirgen Daut

5‐Hydroxydecanoate (5‐HD) blocks pharmacological and ischaemic preconditioning, and has been postulated to be a specific inhibitor of mitochondrial ATP‐sensitive K+ (KATP) channels. However, recent work has shown that 5‐HD is activated to 5‐hydroxydecanoyl‐CoA (5‐HD‐CoA), which is a substrate for the first step of β‐oxidation. We have now analysed the complete β‐oxidation of 5‐HD‐CoA using specially synthesised (and purified) substrates and enzymes, as well as isolated rat liver and heart mitochondria, and compared it with the metabolism of the physiological substrate decanoyl‐CoA. At the second step of β‐oxidation, catalysed by enoyl‐CoA hydratase, enzyme kinetics were similar using either decenoyl‐CoA or 5‐hydroxydecenoyl‐CoA as substrate. The last two steps were investigated using l‐3‐hydroxyacyl‐CoA dehydrogenase (HAD) coupled to 3‐ketoacyl‐CoA thiolase. Vmax for the metabolite of 5‐HD (3,5‐dihydroxydecanoyl‐CoA) was fivefold slower than for the corresponding metabolite of decanoate (l‐3‐hydroxydecanoyl‐CoA). The slower kinetics were not due to accumulation of d‐3‐hydroxyoctanoyl‐CoA since this enantiomer did not inhibit HAD. Molecular modelling of HAD complexed with 3,5‐dihydroxydecanoyl‐CoA suggested that the 5‐hydroxyl group could decrease HAD turnover rate by interacting with critical side chains. Consistent with the kinetic data, 5‐hydroxydecanoyl‐CoA alone acted as a weak substrate in isolated mitochondria, whereas addition of 100 μm 5‐HD‐CoA inhibited the metabolism of decanoyl‐CoA or lauryl‐carnitine. In conclusion, 5‐HD is activated, transported into mitochondria and metabolised via β‐oxidation, albeit with rate‐limiting kinetics at the penultimate step. This creates a bottleneck for β‐oxidation of fatty acids. The complex metabolic effects of 5‐HD invalidate the use of 5‐HD as a blocker of mitochondrial KATP channels in studies of preconditioning.


Chemical Communications | 2005

Uncorking of liposomes by matrix metalloproteinase-9

Nihar Sarkar; Theresa Rosendahl; Aaron B. Krueger; Abir L. Banerjee; Keith Benton; Sanku Mallik; D. K. Srivastava

A triggered release methodology of liposomal contents via the enzyme MMP-9 is described.


Bioconjugate Chemistry | 2008

Matrix metalloproteinase-assisted triggered release of liposomal contents.

Nihar Sarkar; Jayati Banerjee; Andrea J. Hanson; Adekunle I. Elegbede; Theresa Rosendahl; Aaron B. Krueger; Abir L. Banerjee; Shakila Tobwala; Rongying Wang; Xiaoning Lu; Sanku Mallik; D.K. Srivastava


Journal of the American Chemical Society | 2006

Ultrahigh resolution crystal structures of human carbonic anhydrases I and II complexed with two-prong inhibitors reveal the molecular basis of high affinity.

Kevin M. Jude; Abir L. Banerjee; Manas K. Haldar; Sumathra Manokaran; Bidhan C. Roy; Sanku Mallik; D. K. Srivastava; David W. Christianson


Journal of the American Chemical Society | 2004

Protein Surface-Assisted Enhancement in the Binding Affinity of an Inhibitor for Recombinant Human Carbonic Anhydrase-II

Abir L. Banerjee; Michael L. Swanson; Bidhan C. Roy; Xiao Jia; Manas K. Haldar; Sanku Mallik; D. K. Srivastava


Journal of the American Chemical Society | 2007

Structural Analysis of Charge Discrimination in the Binding of Inhibitors to Human Carbonic Anhydrases I and II

D.K. Srivastava; Kevin M. Jude; Abir L. Banerjee; Manas K. Haldar; Sumathra Manokaran; Joel Kooren; Sanku Mallik; David W. Christianson


Journal of the American Chemical Society | 2004

Two-Prong Inhibitors for Human Carbonic Anhydrase II

Bidhan C. Roy; Abir L. Banerjee; Michael L. Swanson; Xiao G. Jia; Manas K. Haldar; Sanku Mallik; D. K. Srivastava


Biochemistry | 2005

Spacer-based selectivity in the binding of "two-prong" ligands to recombinant human carbonic anhydrase I.

Abir L. Banerjee; Daniel Eiler; Bidhan C. Roy; Xiao Jia; Manas K. Haldar; Sanku Mallik; D. K. Srivastava


Biochemistry | 2005

Molecular basis for the origin of differential spectral and binding profiles of dansylamide with human carbonic anhydrase I and II.

Abir L. Banerjee; Shakila Tobwala; Bratati Ganguly; Sanku Mallik; D. K. Srivastava


Chemical Communications | 2005

Inhibition of matrix metalloproteinase-9 by “multi-prong” surface binding groups

Abir L. Banerjee; Shakila Tobwala; Manas K. Haldar; Michael Swanson; Bidhan C. Roy; Sanku Mallik; D. K. Srivastava

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Sanku Mallik

North Dakota State University

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D. K. Srivastava

North Dakota State University

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Manas K. Haldar

North Dakota State University

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Bidhan C. Roy

Indian Institute of Technology Kharagpur

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Shakila Tobwala

North Dakota State University

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Aaron B. Krueger

North Dakota State University

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D.K. Srivastava

North Dakota State University

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