Abir L. Banerjee
North Dakota State University
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Publication
Featured researches published by Abir L. Banerjee.
The Journal of Physiology | 2005
Peter J. Hanley; Stefan Dröse; Ulrich Brandt; Rachel A. Lareau; Abir L. Banerjee; D. K. Srivastava; Leonard J. Banaszak; Joseph J. Barycki; Paul P. Van Veldhoven; Jtirgen Daut
5‐Hydroxydecanoate (5‐HD) blocks pharmacological and ischaemic preconditioning, and has been postulated to be a specific inhibitor of mitochondrial ATP‐sensitive K+ (KATP) channels. However, recent work has shown that 5‐HD is activated to 5‐hydroxydecanoyl‐CoA (5‐HD‐CoA), which is a substrate for the first step of β‐oxidation. We have now analysed the complete β‐oxidation of 5‐HD‐CoA using specially synthesised (and purified) substrates and enzymes, as well as isolated rat liver and heart mitochondria, and compared it with the metabolism of the physiological substrate decanoyl‐CoA. At the second step of β‐oxidation, catalysed by enoyl‐CoA hydratase, enzyme kinetics were similar using either decenoyl‐CoA or 5‐hydroxydecenoyl‐CoA as substrate. The last two steps were investigated using l‐3‐hydroxyacyl‐CoA dehydrogenase (HAD) coupled to 3‐ketoacyl‐CoA thiolase. Vmax for the metabolite of 5‐HD (3,5‐dihydroxydecanoyl‐CoA) was fivefold slower than for the corresponding metabolite of decanoate (l‐3‐hydroxydecanoyl‐CoA). The slower kinetics were not due to accumulation of d‐3‐hydroxyoctanoyl‐CoA since this enantiomer did not inhibit HAD. Molecular modelling of HAD complexed with 3,5‐dihydroxydecanoyl‐CoA suggested that the 5‐hydroxyl group could decrease HAD turnover rate by interacting with critical side chains. Consistent with the kinetic data, 5‐hydroxydecanoyl‐CoA alone acted as a weak substrate in isolated mitochondria, whereas addition of 100 μm 5‐HD‐CoA inhibited the metabolism of decanoyl‐CoA or lauryl‐carnitine. In conclusion, 5‐HD is activated, transported into mitochondria and metabolised via β‐oxidation, albeit with rate‐limiting kinetics at the penultimate step. This creates a bottleneck for β‐oxidation of fatty acids. The complex metabolic effects of 5‐HD invalidate the use of 5‐HD as a blocker of mitochondrial KATP channels in studies of preconditioning.
Chemical Communications | 2005
Nihar Sarkar; Theresa Rosendahl; Aaron B. Krueger; Abir L. Banerjee; Keith Benton; Sanku Mallik; D. K. Srivastava
A triggered release methodology of liposomal contents via the enzyme MMP-9 is described.
Bioconjugate Chemistry | 2008
Nihar Sarkar; Jayati Banerjee; Andrea J. Hanson; Adekunle I. Elegbede; Theresa Rosendahl; Aaron B. Krueger; Abir L. Banerjee; Shakila Tobwala; Rongying Wang; Xiaoning Lu; Sanku Mallik; D.K. Srivastava
Journal of the American Chemical Society | 2006
Kevin M. Jude; Abir L. Banerjee; Manas K. Haldar; Sumathra Manokaran; Bidhan C. Roy; Sanku Mallik; D. K. Srivastava; David W. Christianson
Journal of the American Chemical Society | 2004
Abir L. Banerjee; Michael L. Swanson; Bidhan C. Roy; Xiao Jia; Manas K. Haldar; Sanku Mallik; D. K. Srivastava
Journal of the American Chemical Society | 2007
D.K. Srivastava; Kevin M. Jude; Abir L. Banerjee; Manas K. Haldar; Sumathra Manokaran; Joel Kooren; Sanku Mallik; David W. Christianson
Journal of the American Chemical Society | 2004
Bidhan C. Roy; Abir L. Banerjee; Michael L. Swanson; Xiao G. Jia; Manas K. Haldar; Sanku Mallik; D. K. Srivastava
Biochemistry | 2005
Abir L. Banerjee; Daniel Eiler; Bidhan C. Roy; Xiao Jia; Manas K. Haldar; Sanku Mallik; D. K. Srivastava
Biochemistry | 2005
Abir L. Banerjee; Shakila Tobwala; Bratati Ganguly; Sanku Mallik; D. K. Srivastava
Chemical Communications | 2005
Abir L. Banerjee; Shakila Tobwala; Manas K. Haldar; Michael Swanson; Bidhan C. Roy; Sanku Mallik; D. K. Srivastava